CsGy6G025880 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G025880
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	photosystem I reaction center subunit N, chloroplastic
Location	Chr6 : 25430471 .. 25431881 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGGCTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGTGAACTACCTATTCATATTGCCTTTGTCAAATGCTGTGTTTCAATACTTTGATGAAAATGTGTTTGATCTCTGTTGGTGTTGAATTTTCAAAGTATGTGAAATCAAAATATTATTTTGGATTTGTATCTTAAACTAGAAGTATCTATAAGGTATGCTGAGGATTAAAACTAGGAGTTTAAGTCTTTAAGATTCATGTTGAATGTCATGCTGAAATTTGAAGCTATGGACTAATGTTTTAAAAAGCCCTCCCATGATCAAGGCCAAAAGCCTTGAGTTTTCTTAGAAGACTATTGCACTATATCGTGCCTTGAACTTTTTAAAACACTACAATGGACTAACATAAACGTATAAAACAAGATTTATATGAAAAGTTTTTCATGTTTCTAAACCTTTTATTGCGATTTTCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGGTTTGGACATAGTTTTAGTTGTAATCATTATCAGTTTTTTGAATTGTTGACAATATGAGATGGGTTTTTGTTTTGCTGAGTGCTAAGTTAGTTTTATGTTCTGTTTTTGATTGATGCAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGGAGAGAACCATTTTTAAGTCTTTGTACCCATTACTCACTTCTCCCCTTGTATCTAATTTTCAACTATTGAAAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCAATTCCATTGTTTTCTCTTCTCTATTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGGCCTTAACATTTGTTAGAATTCTTCCTCAATAAACATCATTATATGCATTTAATTAGGCCTAATGGAATTATCATGAGAAAGAGTGCACAAAAACTCAGAGAATTGGTGTGTTATTTAATGTAAGCAAAGATGTGTCAAGCGATGCATAAACAAATACGAGAGAAAAG

mRNA sequence

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGGCTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGTGAACTACCTATTCATATTGCCTTTGTCAAATGCTGTGTTTCAATACTTTGATGAAAATGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGGAGAGAACCATTTTTAAGTCTTTGTACCCATTACTCACTTCTCCCCTTGTATCTAATTTTCAACTATTGAAAAGTGTGAAATTTTATTGTTTGCCTTTTTTGGGGACATGTGTTCCAATTCCATTGTTTTCTCTTCTCTATTTGAGACCAAAAGAAGCAAAATGTGAAAGTAGAAACCCTAGACATCTATGGCCTTAACATTTGTTAGAATTCTTCCTCAATAAACATCATTATATGCATTTAATTAGGCCTAATGGAATTATCATGAGAAAGAGTGCACAAAAACTCAGAGAATTGGTGTGTTATTTAATGTAAGCAAAGATGTGTCAAGCGATGCATAAACAAATACGAGAGAAAAG

Coding sequence (CDS)

ATGGCCACCATGAATTCCAGTGTTCTGGCTTGCAACTATGCCATTTCCGGCGCTGGATCGGCTGACCTCAACTCTAAACTCACCGCCGCCCCTTCTGTTGCGTCTCCTGGGGTTGTGGGTTACAAGTTGCCGGCTATTAGAGCTCAACAGGCTAAGGTTCCTGAAGCTAAGAACGATGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCTCCCTCTTTGCTGCGGCTGCGGCTGCCTCTAACTCCTCTGCTAATGCTGGAGTCATTGAAGATTATCTTGAGAAGAGTAAAGCTAACAAGGTGAACTACCTATTCATATTGCCTTTGTCAAATGCTGTGTTTCAATACTTTGATGAAAATGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGAGCAAACTTCGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCCAAACAAAAGAAAGTTCCATTTATAACTGATGATTTGGAATTGGAGTGTGAAGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA

Protein sequence

MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDENELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW

Homology

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BLAST of CsGy6G025880 vs. NCBI nr
Match: XP_004148659.1 (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus] >KGN48348.1 hypothetical protein Csa_6G483300 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 6.3e-82
Identity = 169/191 (88.48%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQ KVPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDEN 120
           RRTALLYLGASLFAAXXXXXX SANAGVIEDYLEKSKANK                    
Sbjct: 61  RRTALLYLGASLFAAXXXXXXXSANAGVIEDYLEKSKANK-------------------- 120

Query: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 180
           ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK
Sbjct: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 171

Query: 181 YKCGSNVFWKW 192
           YKCGSNVFWKW
Sbjct: 181 YKCGSNVFWKW 171

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BLAST of CsGy6G025880 vs. NCBI nr
Match: XP_008441057.1 (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 2.4e-81
Identity = 166/191 (86.91%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQA+VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDEN 120
           RRTALLYLGA+LFAA XXXXXSSANAGVIEDYLEKSKANK                    
Sbjct: 61  RRTALLYLGATLFAAAXXXXXSSANAGVIEDYLEKSKANK-------------------- 120

Query: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 180
           ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK
Sbjct: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 171

Query: 181 YKCGSNVFWKW 192
           YKCGSNVFWKW
Sbjct: 181 YKCGSNVFWKW 171

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BLAST of CsGy6G025880 vs. NCBI nr
Match: XP_022950888.1 (photosystem I reaction center subunit N, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 300.1 bits (767), Expect = 5.5e-78
Identity = 160/191 (83.77%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADL+SK+ AAPSVASPGVVGYKLPAIRAQQA+VPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDEN 120
           RR+ALLYLGA+LFAAXXXXXX  ANAGVIE+YLEKSKANK                    
Sbjct: 61  RRSALLYLGATLFAAXXXXXXXXANAGVIEEYLEKSKANK-------------------- 120

Query: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 180
           ELNDKKRLATSGANFARAYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDK
Sbjct: 121 ELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDK 171

Query: 181 YKCGSNVFWKW 192
           YKCGSNVFWKW
Sbjct: 181 YKCGSNVFWKW 171

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BLAST of CsGy6G025880 vs. NCBI nr
Match: XP_023543117.1 (photosystem I reaction center subunit N, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 297.0 bits (759), Expect = 4.7e-77
Identity = 159/191 (83.25%), Postives = 167/191 (87.43%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDG 60
           MATMNSSVLACNYAISGA SADL+SK+ AAPSVASPGVVGYKLPAIRAQQA+VPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGARSADLSSKINAAPSVASPGVVGYKLPAIRAQQARVPEAKNDG 60

Query: 61  RRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDEN 120
           RR+ALLYLGA+LFAAXXXXXX  ANAGVIE+YLEKSKANK                    
Sbjct: 61  RRSALLYLGATLFAAXXXXXXXXANAGVIEEYLEKSKANK-------------------- 120

Query: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 180
           ELNDKKRLATSGANFARAYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDK
Sbjct: 121 ELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDK 171

Query: 181 YKCGSNVFWKW 192
           YKCGSNVFWKW
Sbjct: 181 YKCGSNVFWKW 171

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BLAST of CsGy6G025880 vs. NCBI nr
Match: XP_023003251.1 (photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 295.4 bits (755), Expect = 1.4e-76
Identity = 152/191 (79.58%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSA+LNSKL+A  SVASPGV GYKLPAIRAQQA+VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDEN 120
           RRTALL+LGASLFAA      S+ANAGVIE+YLEKSKANK                    
Sbjct: 61  RRTALLFLGASLFAAAAASSNSTANAGVIEEYLEKSKANK-------------------- 120

Query: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 180
           ELNDKKRLATSGANFARAYTV+FG+CKFPENFTGCQDLAKQKKVPFI+DDLELECEGKDK
Sbjct: 121 ELNDKKRLATSGANFARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDK 171

Query: 181 YKCGSNVFWKW 192
           YKCGSNVFWKW
Sbjct: 181 YKCGSNVFWKW 171

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BLAST of CsGy6G025880 vs. TAIR10
Match: AT5G64040.2 (photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN))

HSP 1 Score: 144.8 bits (364), Expect = 5.4e-35
Identity = 85/164 (51.83%), Postives = 109/164 (66.46%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYK-LPAIRAQQAKVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+    S    G      +P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  DGRRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFD 120
           +GRR+A+++L A+LF+       +SANAGVI++YLE+SK NK                  
Sbjct: 61  NGRRSAMVFLAATLFST--AAVSASANAGVIDEYLERSKTNK------------------ 120

Query: 121 ENELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQK 163
             ELNDKKRLATSGANFARA+TV+FG+CKFPENFTGCQDLAKQK
Sbjct: 121 --ELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQK 142

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BLAST of CsGy6G025880 vs. Swiss-Prot
Match: sp|P49107|PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAN PE=1 SV=2)

HSP 1 Score: 205.3 bits (521), Expect = 6.1e-52
Identity = 110/193 (56.99%), Postives = 137/193 (70.98%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYK-LPAIRAQQAKVPEAK-N 60
           MA MNSSVL C+YAI+G+GS +LN K+    S    G      +P I+AQ+    +   +
Sbjct: 1   MAAMNSSVLTCSYAIAGSGSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRVVGDDVDGS 60

Query: 61  DGRRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFD 120
           +GRR+A+++L A+LF+       +SANAGVI++YLE+SK NK                  
Sbjct: 61  NGRRSAMVFLAATLFST--AAVSASANAGVIDEYLERSKTNK------------------ 120

Query: 121 ENELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGK 180
             ELNDKKRLATSGANFARA+TV+FG+CKFPENFTGCQDLAKQKKVPFI++D+ LECEGK
Sbjct: 121 --ELNDKKRLATSGANFARAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGK 171

Query: 181 DKYKCGSNVFWKW 192
           DKYKCGSNVFWKW
Sbjct: 181 DKYKCGSNVFWKW 171

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BLAST of CsGy6G025880 vs. Swiss-Prot
Match: sp|P31093|PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAN PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 95/163 (58.28%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 29  AAPSVASPGVVGYKLPAIRAQQAKVPEAKNDGRRTALLYLGASLFAAXXXXXXSSANAGV 88
           A P  ASP           A++ +V  AK+  RR+ALL L A++FAA       SA A V
Sbjct: 16  AVPQSASPAA---------AKRVQVAPAKD--RRSALLGL-AAVFAA-TAASAGSARASV 75

Query: 89  IEDYLEKSKANKVNYLFILPLSNAVFQYFDENELNDKKRLATSGANFARAYTVEFGTCKF 148
            ++YLEKSK NK                    ELNDKKR ATSGANFARAYTV+FG+CKF
Sbjct: 76  FDEYLEKSKLNK--------------------ELNDKKRAATSGANFARAYTVQFGSCKF 135

Query: 149 PENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 192
           P NFTGCQDLAKQKKVPFITDDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 136 PYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145

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BLAST of CsGy6G025880 vs. Swiss-Prot
Match: sp|O65107|PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX=4577 GN=PSAN PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-38
Identity = 76/109 (69.72%), Postives = 85/109 (77.98%), Query Frame = 0


Query: 83  SANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDENELNDKKRLATSGANFARAYTVE 142
           SA A + ++YLEKSKANK                    ELNDKKRLATSGANFARAYTVE
Sbjct: 24  SAKATIFDEYLEKSKANK--------------------ELNDKKRLATSGANFARAYTVE 83

Query: 143 FGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 192
           FG+C+FP NFTGCQDLAKQKKVPFI+DDLE+ECEGK+K+KCGSNVFWKW
Sbjct: 84  FGSCQFPYNFTGCQDLAKQKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

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BLAST of CsGy6G025880 vs. Swiss-Prot
Match: sp|Q9SBN5|PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067 GN=PSAN PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-22
Identity = 70/152 (46.05%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 45  AIRAQQAKVPEAK-----------NDGRRTALLYLGASLFAAXXXXXXSSANAGVIEDYL 104
           A+RAQ AKV  A+           +   R  LL LG  L AA       +ANAGV+ED L
Sbjct: 4   AMRAQCAKVQAARPARATTVVCRASAQSRRELLGLGVLLGAA---ALAPAANAGVVEDLL 63

Query: 105 EKSKANKVNYLFILPLSNAVFQYFDENELNDKKRLATSGANFARAYTVEFGTCKFPENFT 164
            KS ANK                     LN+KKRLATS AN AR+ TV  GTC+FPENF 
Sbjct: 64  AKSAANKA--------------------LNNKKRLATSYANLARSRTVYDGTCQFPENFF 123

Query: 165 GCQDLAKQKKVPFITDDLELECEGKDKYKCGS 186
           GC++LA  K V +I +DL++ECEGKD   CGS
Sbjct: 124 GCEELAFNKGVKYIAEDLKIECEGKDAKSCGS 132

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BLAST of CsGy6G025880 vs. TrEMBL
Match: tr|A0A0A0KFM1|A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 4.2e-82
Identity = 169/191 (88.48%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQ KVPEAKNDG
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAKNDG 60

Query: 61  RRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDEN 120
           RRTALLYLGASLFAAXXXXXX SANAGVIEDYLEKSKANK                    
Sbjct: 61  RRTALLYLGASLFAAXXXXXXXSANAGVIEDYLEKSKANK-------------------- 120

Query: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 180
           ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK
Sbjct: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 171

Query: 181 YKCGSNVFWKW 192
           YKCGSNVFWKW
Sbjct: 181 YKCGSNVFWKW 171

[Close]

BLAST of CsGy6G025880 vs. TrEMBL
Match: tr|A0A1S3B240|A0A1S3B240_CUCME (photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485284 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 1.6e-81
Identity = 166/191 (86.91%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAKNDG 60
           MATMNSSVLACNYAISGAGSADLNSKLTA PSVASPGVVGYKLPAIRAQQA+VPEAKN+G
Sbjct: 1   MATMNSSVLACNYAISGAGSADLNSKLTAVPSVASPGVVGYKLPAIRAQQARVPEAKNEG 60

Query: 61  RRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYFDEN 120
           RRTALLYLGA+LFAA XXXXXSSANAGVIEDYLEKSKANK                    
Sbjct: 61  RRTALLYLGATLFAAAXXXXXSSANAGVIEDYLEKSKANK-------------------- 120

Query: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 180
           ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK
Sbjct: 121 ELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDK 171

Query: 181 YKCGSNVFWKW 192
           YKCGSNVFWKW
Sbjct: 181 YKCGSNVFWKW 171

[Close]

BLAST of CsGy6G025880 vs. TrEMBL
Match: tr|A0A0D2QP55|A0A0D2QP55_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G066700 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.2e-66
Identity = 137/196 (69.90%), Postives = 155/196 (79.08%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVV-GYKLPAIRAQQAKVPEAK-- 60
           MA MNSSVLACNYAISG GS++LN+KL +APSVASP +  G+KLP IRAQQAK  ++K  
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKLASAPSVASPVMCGGHKLPVIRAQQAKFSDSKGS 60

Query: 61  --NDGRRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQ 120
             ++GRR A+LYL A LF        SSANAGVI++YLEKSKANK+N L +         
Sbjct: 61  GASEGRRAAMLYLAAGLFTT---AVASSANAGVIDEYLEKSKANKINLLLL--------- 120

Query: 121 YFDENELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELEC 180
                ELNDKKRLATSGANF+RAYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDL LEC
Sbjct: 121 ----QELNDKKRLATSGANFSRAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALEC 180

Query: 181 EGKDKYKCGSNVFWKW 192
           EGKDKYKCGSNVFWKW
Sbjct: 181 EGKDKYKCGSNVFWKW 180

[Close]

BLAST of CsGy6G025880 vs. TrEMBL
Match: tr|A0A1R3GGP6|A0A1R3GGP6_COCAP (Photosystem I PsaN, reaction centre subunit N OS=Corchorus capsularis OX=210143 GN=CCACVL1_25930 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 7.1e-66
Identity = 138/194 (71.13%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVV-GYKLPAIRAQQAKVPEAKN- 60
           MA MNSSVLACNYAISG GS++LN+KL + PSVASPGV  GYKLP IRAQQAKVP+    
Sbjct: 1   MAAMNSSVLACNYAISGTGSSELNAKLASVPSVASPGVSGGYKLPVIRAQQAKVPKESGA 60

Query: 61  -DGRRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQYF 120
            +GRR A+LYL A+LF        SSANAGVI++YLEKSKANK                 
Sbjct: 61  VEGRRAAMLYLAATLFTT---AAASSANAGVIDEYLEKSKANK----------------- 120

Query: 121 DENELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEG 180
              ELNDKKRLATSGANFARAYTV+FGTCKFPENFTGCQDLAKQKKVPFI++DL LECEG
Sbjct: 121 ---ELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLALECEG 171

Query: 181 KDKYKCGSNVFWKW 192
           KDKYKCGSNVFWKW
Sbjct: 181 KDKYKCGSNVFWKW 171

[Close]

BLAST of CsGy6G025880 vs. TrEMBL
Match: tr|A0A1J7IRQ5|A0A1J7IRQ5_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_02461 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.1e-65
Identity = 133/195 (68.21%), Postives = 152/195 (77.95%), Query Frame = 0


Query: 1   MATMNSSVLACNYAISGAGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAK--- 60
           MA MNSSVLAC Y ISG+G ++LN+KLT+ PSVASP V G KL  I+AQQA++P+AK   
Sbjct: 1   MAAMNSSVLACTYTISGSGCSELNAKLTSMPSVASPPVSGQKLHVIKAQQARIPQAKESQ 60

Query: 61  -NDGRRTALLYLGASLFAAXXXXXXSSANAGVIEDYLEKSKANKVNYLFILPLSNAVFQY 120
            ++GRR AL++L A+LF+       S+ANAGVIEDYLEKSKANK                
Sbjct: 61  ASEGRRGALVFLAATLFSTAAIASNSAANAGVIEDYLEKSKANK---------------- 120

Query: 121 FDENELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECE 180
               ELNDKKRLATSGANFARAYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELECE
Sbjct: 121 ----ELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECE 175

Query: 181 GKDKYKCGSNVFWKW 192
           G+DKYKCGSNVFWKW
Sbjct: 181 GRDKYKCGSNVFWKW 175

The following BLAST results are available for this feature:

BLAST of CsGy6G025880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148659.1	6.3e-82	88.48	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativ...	[more]
XP_008441057.1	2.4e-81	86.91	PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]	[more]
XP_022950888.1	5.5e-78	83.77	photosystem I reaction center subunit N, chloroplastic-like [Cucurbita moschata]	[more]
XP_023543117.1	4.7e-77	83.25	photosystem I reaction center subunit N, chloroplastic-like [Cucurbita pepo subs...	[more]
XP_023003251.1	1.4e-76	79.58	photosystem I reaction center subunit N, chloroplastic isoform X1 [Cucurbita max...	[more]

BLAST of CsGy6G025880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64040.2	5.4e-35	51.83	photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, puta...	[more]

BLAST of CsGy6G025880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P49107\|PSAN_ARATH	6.1e-52	56.99	Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|P31093\|PSAN_HORVU	2.4e-40	58.28	Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare OX=451...	[more]
sp\|O65107\|PSAN_MAIZE	2.2e-38	69.72	Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays OX...	[more]
sp\|Q9SBN5\|PSAN_VOLCA	1.7e-22	46.05	Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri OX=3067...	[more]

BLAST of CsGy6G025880 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFM1\|A0A0A0KFM1_CUCSA	4.2e-82	88.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483300 PE=4 SV=1	[more]
tr\|A0A1S3B240\|A0A1S3B240_CUCME	1.6e-81	86.91	photosystem I reaction center subunit N, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
tr\|A0A0D2QP55\|A0A0D2QP55_GOSRA	3.2e-66	69.90	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G066700 PE=4 ...	[more]
tr\|A0A1R3GGP6\|A0A1R3GGP6_COCAP	7.1e-66	71.13	Photosystem I PsaN, reaction centre subunit N OS=Corchorus capsularis OX=210143 ...	[more]
tr\|A0A1J7IRQ5\|A0A1J7IRQ5_LUPAN	2.1e-65	68.21	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_02461 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR008796	PSAN

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy6G025880.1	CsGy6G025880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:1.20.5.740		coord: 87..101 e-value: 1.2E-5 score: 26.9
None	No IPR available	GENE3D	G3DSA:4.10.1190.10		coord: 112..191 e-value: 3.7E-43 score: 147.8
None	No IPR available	PANTHER	PTHR36814	FAMILY NOT NAMED	coord: 120..191 coord: 1..100
IPR008796	Photosystem I reaction centre subunit N, chloroplastic	PFAM	PF05479	PsaN	coord: 120..191 e-value: 6.2E-46 score: 155.8 coord: 44..100 e-value: 3.0E-12 score: 46.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy6G025880	Cla008429	Watermelon (97103) v1	cgybwmB469
CsGy6G025880	Csa6G483300	Cucumber (Chinese Long) v2	cgybcuB281
CsGy6G025880	MELO3C008060	Melon (DHL92) v3.5.1	cgybmeB446
CsGy6G025880	ClCG01G015380	Watermelon (Charleston Gray)	cgybwcgB399
CsGy6G025880	CSPI06G26390	Wild cucumber (PI 183967)	cgybcpiB287
CsGy6G025880	CmaCh03G010990	Cucurbita maxima (Rimu)	cgybcmaB831
CsGy6G025880	CmoCh07G008310	Cucurbita moschata (Rifu)	cgybcmoB843
CsGy6G025880	Lsi01G011580	Bottle gourd (USVL1VR-Ls)	cgyblsiB398
CsGy6G025880	Cp4.1LG19g12170	Cucurbita pepo (Zucchini)	cgybcpeB810
CsGy6G025880	Cp4.1LG10g03660	Cucurbita pepo (Zucchini)	cgybcpeB710
CsGy6G025880	MELO3C008060.2	Melon (DHL92) v3.6.1	cgybmedB443
CsGy6G025880	CsaV3_6G041600	Cucumber (Chinese Long) v3	cgybcucB298
CsGy6G025880	Cla97C01G014340	Watermelon (97103) v2	cgybwmbB394
CsGy6G025880	Bhi03G001038	Wax gourd	cgybwgoB593
CsGy6G025880	Carg05317	Silver-seed gourd	carcgybB0799

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy6G025880	Cucurbita maxima (Rimu)	cgybcmaB861
CsGy6G025880	Cucurbita moschata (Rifu)	cgybcmoB811
CsGy6G025880	Silver-seed gourd	carcgybB0255