Lsi01G011580.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAATAAAATAGAAGTTGCTTCATGGCAACGAAGAACTGGAATTTGAAGCGCTCGTTTAAGATTTCGAAGTGGGTCCAAAATTGAACCTCGCCACACAAATTTCCATGTCCGAAAACCCTAATCACAGCCATGGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACAATCCCTTATCCAATTCCATCTCAAACATCCCCTCTTTTATCAGATTCCCTCATAATCCCATTATCCCATTAACAACTGACCGCCATTAATTCCATCTCTGAGTTTGTCCAACCAAGTTGCAATCCAATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGTAACTATACATAAAAGTTCAAATTGCTTTTATCAAATGCTCTGTTTCCATACTTTGAGTTAGCATAAAATAATAAGAATGTGTTTTGGTTCCTGTTGTTGCTGAATTTCCATAGTATATGAAACAGAAATCTTATGTGGGATTTGTATATGTCAGTGCTTTCACCCATCCACTTAAATTTTTGGGTTAATCCAATTCCTACAATATTATATCCTCTCCGATTAATATTGATTTTCTACATATTTTAAGCCCACAAGTGAGAAAAATTATTAAATGGTATATTATTAAATTTACCTTCATCCATTTATTTAAGTTTTTGAATCAATAGGTGATTTAAGAGTGTCTTAAACTAGAAGTATCTATCAAGTACGCTGACTGTTTGAGTCTTTAAGATTCATGTTGAATGTTATGCTGAAGTTTGAAGCTGAGGACTAATATAGAAATAGAATGTTTCAAAGTATAAGGAAAGGATCAAAAGTAAAGGGACTGAAAACAGGATTTAGATGAAAAATCTTTCATGTTTCTTACCCTGTTATTGCAATTTGCAACAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGGTTTGGACATGGTTTAGTTGTAATCACTATTGGTATTTTTGAATTGTTAACAATATGGGATGAGTTTTTGCTGAGTACTAAGTTAGTTCTCTGTTCTGTTTTTGATGGATGCAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAACCATTTTATTGAAGTCTTTGTATCCCTCACCACCATTAGTTACTCTTCCCCTTGTATCTAATTTTCAACTCTTAAAAAGTGTGAAATTTTATTATGCCTTTTTGGGGACAGGTGTTCCAGTTCCATTGCTTTCATTCTTCTCTTGAGACCAAAAGAAGCAAAATGAGAAAGTAGAAACCCTAGATATCTATTGCATTAACTTTTGTTAGAATTCTTCCTCAATAAACATCATACGTGCATTTTTTACAAGTATAATTGGGGTTGGGATGTGAACCATGGACCTCTTGGTCTTTGACTCTTTAACATATACTAATGTTAGTTGAGCTAAGTTTTTTTTTTTA TAATAAAATAGAAGTTGCTTCATGGCAACGAAGAACTGGAATTTGAAGCGCTCGTTTAAGATTTCGAAGTGGGTCCAAAATTGAACCTCGCCACACAAATTTCCATGTCCGAAAACCCTAATCACAGCCATGGTTTGCCAATTGGGAGTGAGGAAATCTCACCTTATCCACACTCTCACCACAATCCCTTATCCAATTCCATCTCAAACATCCCCTCTTTTATCAGATTCCCTCATAATCCCATTATCCCATTAACAACTGACCGCCATTAATTCCATCTCTGAGTTTGTCCAACCAAGTTGCAATCCAATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGAAGAGAAGAGAACCATTTTATTGAAGTCTTTGTATCCCTCACCACCATTAGTTACTCTTCCCCTTGTATCTAATTTTCAACTCTTAAAAAGTGTGAAATTTTATTATGCCTTTTTGGGGACAGGTGTTCCAGTTCCATTGCTTTCATTCTTCTCTTGAGACCAAAAGAAGCAAAATGAGAAAGTAGAAACCCTAGATATCTATTGCATTAACTTTTGTTAGAATTCTTCCTCAATAAACATCATACGTGCATTTTTTACAAGTATAATTGGGGTTGGGATGTGAACCATGGACCTCTTGGTCTTTGACTCTTTAACATATACTAATGTTAGTTGAGCTAAGTTTTTTTTTTTA ATGGCGACCATGAATTCCAGTGTTCTGGCTTGCAACTACGCCATTTCCGGCGCTGGATCGGCTGACCTGAACTCCAAACTCACTGCCGTCCCGTCTGTTGCGACTCCTGGGGTTGCGGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCCAAGAACGAAGGAAGGAGGACTGCGCTTCTTTACCTTGGAGCCACCCTCTTTGCTGCGGCTGCGGCTGCCTCCAACTCCTCTGCCAATGCTGGAGTCATTGAAGATTACCTTGAGAAGAGTAAAGCTAACAAGGAATTGAATGACAAGAAAAGATTGGCAACAAGTGGGGCAAACTTTGCAAGGGCATACACTGTTGAATTTGGAACATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCTAAACAAAAGAAAGTTCCATTTATCACTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGGTGA MATMNSSVLACNYAISGAGSADLNSKLTAVPSVATPGVAGYKLPAIRAQQARVPEAKNEGRRTALLYLGATLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFARAYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW
BLAST of Lsi01G011580.1 vs. Swiss-Prot
Match: PSAN_ARATH (Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2) HSP 1 Score: 219.2 bits (557), Expect = 3.6e-56 Identity = 114/173 (65.90%), Postives = 140/173 (80.92%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. Swiss-Prot
Match: PSAN_HORVU (Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 6.3e-45 Identity = 97/143 (67.83%), Postives = 107/143 (74.83%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. Swiss-Prot
Match: PSAN_MAIZE (Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 4.2e-41 Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. Swiss-Prot
Match: PSAN_VOLCA (Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25 Identity = 71/132 (53.79%), Postives = 86/132 (65.15%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. TrEMBL
Match: A0A0A0KFM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G483300 PE=4 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 3.0e-86 Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. TrEMBL
Match: F6I0D9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g01410 PE=4 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 6.1e-71 Identity = 140/175 (80.00%), Postives = 158/175 (90.29%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. TrEMBL
Match: G7JAX6_MEDTR (Photosystem I reaction center subunit N OS=Medicago truncatula GN=MTR_3g095540 PE=2 SV=1) HSP 1 Score: 273.9 bits (699), Expect = 1.4e-70 Identity = 140/175 (80.00%), Postives = 155/175 (88.57%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. TrEMBL
Match: A0A0S3QY87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G076000 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 2.6e-69 Identity = 135/172 (78.49%), Postives = 156/172 (90.70%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. TrEMBL
Match: A0A0L9TJG3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g016500 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 2.6e-69 Identity = 135/172 (78.49%), Postives = 156/172 (90.70%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. TAIR10
Match: AT5G64040.2 (AT5G64040.2 photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)) HSP 1 Score: 158.3 bits (399), Expect = 4.2e-39 Identity = 89/144 (61.81%), Postives = 112/144 (77.78%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. NCBI nr
Match: gi|659080932|ref|XP_008441057.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis melo]) HSP 1 Score: 332.8 bits (852), Expect = 3.5e-88 Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. NCBI nr
Match: gi|449461859|ref|XP_004148659.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Cucumis sativus]) HSP 1 Score: 325.9 bits (834), Expect = 4.3e-86 Identity = 164/171 (95.91%), Postives = 168/171 (98.25%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. NCBI nr
Match: gi|359476926|ref|XP_003631913.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic [Vitis vinifera]) HSP 1 Score: 275.0 bits (702), Expect = 8.8e-71 Identity = 140/175 (80.00%), Postives = 158/175 (90.29%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. NCBI nr
Match: gi|357464531|ref|XP_003602547.1| (photosystem I reaction center subunit N [Medicago truncatula]) HSP 1 Score: 273.9 bits (699), Expect = 2.0e-70 Identity = 140/175 (80.00%), Postives = 155/175 (88.57%), Query Frame = 1
BLAST of Lsi01G011580.1 vs. NCBI nr
Match: gi|743861697|ref|XP_011031185.1| (PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Populus euphratica]) HSP 1 Score: 271.2 bits (692), Expect = 1.3e-69 Identity = 140/174 (80.46%), Postives = 155/174 (89.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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