Lsi01G004960 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G004960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 4074598 .. 4075023 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

mRNA sequence

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Coding sequence (CDS)

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Protein sequence

MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
Homology
[Close]
BLAST of Lsi01G004960 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.9e-58
Identity = 116/143 (81.12%), Postives = 120/143 (83.92%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE- 60
           MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV E 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  -VEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
            VEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

[Close]
BLAST of Lsi01G004960 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-12
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LR SK   SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]
BLAST of Lsi01G004960 vs. TrEMBL
Match: A0A067KKV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQA--FTTSSAV 60
           MGNCI+     P +K    +   E ++   +  ++K  +G Y+  K+   A  F+   + 
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  LEVEHGP-----PPLPVRIDDSFINPADLC----KLPKATIVVSKQQLELILRKSKDIGS 120
            ++E G      PP        F+ P        +  K  IV+++QQL+ +LR +K+  S
Sbjct: 61  TKLEAGELYYLVPP--------FVKPKSASQETHRKQKVKIVLTRQQLQFLLRNAKEFKS 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
           KG  V FS SF  ++R  +W+P+L TI EV
Sbjct: 121 KGFTVGFSTSFREENR--KWQPSLATIQEV 140

[Close]
BLAST of Lsi01G004960 vs. TrEMBL
Match: B9SA67_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862440 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.7e-06
Identity = 44/150 (29.33%), Postives = 72/150 (48.00%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQAF-------T 60
           MGNCI      P +K +  I   E ++      ++K  +G Y G K+   AF        
Sbjct: 1   MGNCIQVLCNQPAEKSRVIIYNGEEKEFKAFTKVKKITSGCYNGCKIVHHAFPFSPLPPN 60

Query: 61  TSSAVLEVEHGPPPLPVRIDDSF-----INPADLCKLPKATIVVSKQQLELILRKSKDIG 120
           T     E+ +  PPL V+   S      +   ++    K  IV++++QLE +L  +K+  
Sbjct: 61  TKLEPRELYYLMPPL-VKTCSSLQVLLKLANQEIFTKQKVKIVLTRRQLESLLNNAKEFK 120

Query: 121 SKGIAVQFSDSFEVDDRCPRWRPALPTIPE 138
           S G++VQ   SF+  D+  +W+P+L TI E
Sbjct: 121 SAGVSVQCLGSFKDGDQ--KWQPSLTTIQE 147

[Close]
BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 7.0e-58
Identity = 116/143 (81.12%), Postives = 120/143 (83.92%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE- 60
           MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV E 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  -VEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
            VEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

[Close]
BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|1009107271|ref|XP_015878797.1| (PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba])

HSP 1 Score: 84.0 bits (206), Expect = 2.4e-13
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQAFTTSS---- 60
           MGNCI     PP +KIK  +   EVE+   +  +EK  +G Y G KL  +A   SS    
Sbjct: 13  MGNCIKVSFRPPQEKIKAVVFNGEVEEFKASTSVEKITSGPYIGFKLVHRAQPHSSLPPN 72

Query: 61  AVLEVEHGPPPLPVRIDDSFINPA----DLCKLPKATIVVSKQQLELILRKSKDIGSKG- 120
           + +E  H  P L  +     ++P     + CK  K  IV+++ QLEL+LR +K +   G 
Sbjct: 73  SKVEPGHLVPYL-TQPSKPLVSPKRANKESCKRQKVKIVLTRDQLELLLRGAKKLHPPGD 132

Query: 121 IAVQFSDSFEVDDRCPRWRPALPTIPE 138
           IAVQ   SF  ++  P WRP+L TIPE
Sbjct: 133 IAVQMLKSFGFEEASPIWRPSLATIPE 158

[Close]
BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 78.6 bits (192), Expect = 9.9e-12
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LR SK   SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]
BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|643723314|gb|KDP32905.1| (hypothetical protein JCGZ_13686 [Jatropha curcas])

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 1 

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQA--FTTSSAV 60
           MGNCI+     P +K    +   E ++   +  ++K  +G Y+  K+   A  F+   + 
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  LEVEHGP-----PPLPVRIDDSFINPADLC----KLPKATIVVSKQQLELILRKSKDIGS 120
            ++E G      PP        F+ P        +  K  IV+++QQL+ +LR +K+  S
Sbjct: 61  TKLEAGELYYLVPP--------FVKPKSASQETHRKQKVKIVLTRQQLQFLLRNAKEFKS 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
           KG  V FS SF  ++R  +W+P+L TI EV
Sbjct: 121 KGFTVGFSTSFREENR--KWQPSLATIQEV 140

The following BLAST results are available for this feature:
BLAST of Lsi01G004960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G004960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHP3_CUCSA4.9e-5881.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1[more]
B9HD50_POPTR6.9e-1235.53Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1[more]
A0A067KKV0_JATCU1.8e-0730.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1[more]
B9SA67_RICCO9.7e-0629.33Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862440 PE=4 SV=1[more]
BLAST of Lsi01G004960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi01G004960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193834|gb|KGN49038.1|7.0e-5881.12hypothetical protein Csa_6G511050 [Cucumis sativus][more]
gi|1009107271|ref|XP_015878797.1|2.4e-1338.10PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba][more]
gi|224089779|ref|XP_002308812.1|9.9e-1235.53hypothetical protein POPTR_0006s01910g [Populus trichocarpa][more]
gi|643723314|gb|KDP32905.1|2.5e-0730.00hypothetical protein JCGZ_13686 [Jatropha curcas][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004960.1Lsi01G004960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G004960Csa6G511050Cucumber (Chinese Long) v2culsiB434
Lsi01G004960CSPI06G32840Wild cucumber (PI 183967)cpilsiB439
Lsi01G004960CmaCh03G005880Cucurbita maxima (Rimu)cmalsiB597
Lsi01G004960CmaCh07G003580Cucurbita maxima (Rimu)cmalsiB786
Lsi01G004960CmoCh03G006140Cucurbita moschata (Rifu)cmolsiB582
Lsi01G004960CmoCh07G003500Cucurbita moschata (Rifu)cmolsiB774
Lsi01G004960Cla014390Watermelon (97103) v1lsiwmB144
Lsi01G004960MELO3C008013Melon (DHL92) v3.5.1lsimeB156
Lsi01G004960ClCG01G021280Watermelon (Charleston Gray)lsiwcgB127
Lsi01G004960MELO3C008013.2Melon (DHL92) v3.6.1lsimedB163
Lsi01G004960Cla97C01G020850Watermelon (97103) v2lsiwmbB115
Lsi01G004960Bhi03G000516Wax gourdlsiwgoB168
Lsi01G004960Cp4.1LG19g08090Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G004960Cp4.1LG10g09980Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G004960CsaV3_6G048300Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G004960Silver-seed gourdcarlsiB364
Lsi01G004960Silver-seed gourdcarlsiB585
Lsi01G004960Cucumber (Chinese Long) v3cuclsiB017
Lsi01G004960Watermelon (97103) v2lsiwmbB112
Lsi01G004960Bottle gourd (USVL1VR-Ls)lsilsiB064
Lsi01G004960Cucumber (Gy14) v1cgylsiB022
Lsi01G004960Cucurbita maxima (Rimu)cmalsiB367
Lsi01G004960Cucurbita maxima (Rimu)cmalsiB517
Lsi01G004960Cucurbita moschata (Rifu)cmolsiB502
Lsi01G004960Cucurbita pepo (Zucchini)cpelsiB413
Lsi01G004960Wild cucumber (PI 183967)cpilsiB019
Lsi01G004960Cucumber (Chinese Long) v2culsiB020
Lsi01G004960Melon (DHL92) v3.5.1lsimeB129
Lsi01G004960Melon (DHL92) v3.5.1lsimeB149
Lsi01G004960Cucumber (Gy14) v2cgyblsiB014
Lsi01G004960Cucumber (Gy14) v2cgyblsiB016
Lsi01G004960Cucumber (Gy14) v2cgyblsiB398