Lsi01G004960 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi01G004960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr01 : 4074598 .. 4075023 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

mRNA sequence

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Coding sequence (CDS)

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGACAGCTAATGGAGCTTATAAAGGCTTAAAGCTAACAAGCCAAGCCTTTACAACTTCAAGTGCAGTTCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATGATTCTTTTATCAACCCTGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAGACATTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Protein sequence

MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY
BLAST of Lsi01G004960 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.9e-58
Identity = 116/143 (81.12%), Postives = 120/143 (83.92%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE- 60
           MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV E 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  -VEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
            VEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

BLAST of Lsi01G004960 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-12
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LR SK   SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

BLAST of Lsi01G004960 vs. TrEMBL
Match: A0A067KKV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQA--FTTSSAV 60
           MGNCI+     P +K    +   E ++   +  ++K  +G Y+  K+   A  F+   + 
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  LEVEHGP-----PPLPVRIDDSFINPADLC----KLPKATIVVSKQQLELILRKSKDIGS 120
            ++E G      PP        F+ P        +  K  IV+++QQL+ +LR +K+  S
Sbjct: 61  TKLEAGELYYLVPP--------FVKPKSASQETHRKQKVKIVLTRQQLQFLLRNAKEFKS 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
           KG  V FS SF  ++R  +W+P+L TI EV
Sbjct: 121 KGFTVGFSTSFREENR--KWQPSLATIQEV 140

BLAST of Lsi01G004960 vs. TrEMBL
Match: B9SA67_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862440 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.7e-06
Identity = 44/150 (29.33%), Postives = 72/150 (48.00%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQAF-------T 60
           MGNCI      P +K +  I   E ++      ++K  +G Y G K+   AF        
Sbjct: 1   MGNCIQVLCNQPAEKSRVIIYNGEEKEFKAFTKVKKITSGCYNGCKIVHHAFPFSPLPPN 60

Query: 61  TSSAVLEVEHGPPPLPVRIDDSF-----INPADLCKLPKATIVVSKQQLELILRKSKDIG 120
           T     E+ +  PPL V+   S      +   ++    K  IV++++QLE +L  +K+  
Sbjct: 61  TKLEPRELYYLMPPL-VKTCSSLQVLLKLANQEIFTKQKVKIVLTRRQLESLLNNAKEFK 120

Query: 121 SKGIAVQFSDSFEVDDRCPRWRPALPTIPE 138
           S G++VQ   SF+  D+  +W+P+L TI E
Sbjct: 121 SAGVSVQCLGSFKDGDQ--KWQPSLTTIQE 147

BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 7.0e-58
Identity = 116/143 (81.12%), Postives = 120/143 (83.92%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICCEVEDLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE- 60
           MGNCINT HFPPLQKIKGFICCEVEDLNLALPIE  A          +QAFTTSSAV E 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  -VEHGPPPLPVRIDDSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSKGIAVQFSDS 120
            VEHGPPPLPVRID S + PADLCKLPK TIVVSKQQLELILRKSK+ GSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|1009107271|ref|XP_015878797.1| (PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba])

HSP 1 Score: 84.0 bits (206), Expect = 2.4e-13
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQAFTTSS---- 60
           MGNCI     PP +KIK  +   EVE+   +  +EK  +G Y G KL  +A   SS    
Sbjct: 13  MGNCIKVSFRPPQEKIKAVVFNGEVEEFKASTSVEKITSGPYIGFKLVHRAQPHSSLPPN 72

Query: 61  AVLEVEHGPPPLPVRIDDSFINPA----DLCKLPKATIVVSKQQLELILRKSKDIGSKG- 120
           + +E  H  P L  +     ++P     + CK  K  IV+++ QLEL+LR +K +   G 
Sbjct: 73  SKVEPGHLVPYL-TQPSKPLVSPKRANKESCKRQKVKIVLTRDQLELLLRGAKKLHPPGD 132

Query: 121 IAVQFSDSFEVDDRCPRWRPALPTIPE 138
           IAVQ   SF  ++  P WRP+L TIPE
Sbjct: 133 IAVQMLKSFGFEEASPIWRPSLATIPE 158

BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 78.6 bits (192), Expect = 9.9e-12
Identity = 54/152 (35.53%), Postives = 79/152 (51.97%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICCEVE-DLNLALPIEKTANGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++K  +G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PVRID-DSFINPADLCKLPKATIVVSKQQLELILRKSKDIGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LR SK   SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

BLAST of Lsi01G004960 vs. NCBI nr
Match: gi|643723314|gb|KDP32905.1| (hypothetical protein JCGZ_13686 [Jatropha curcas])

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 45/150 (30.00%), Postives = 74/150 (49.33%), Query Frame = 1

Query: 1   MGNCINTPHFPPLQKIKGFICC-EVEDLNLALPIEKTANGAYKGLKLTSQA--FTTSSAV 60
           MGNCI+     P +K    +   E ++   +  ++K  +G Y+  K+   A  F+   + 
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  LEVEHGP-----PPLPVRIDDSFINPADLC----KLPKATIVVSKQQLELILRKSKDIGS 120
            ++E G      PP        F+ P        +  K  IV+++QQL+ +LR +K+  S
Sbjct: 61  TKLEAGELYYLVPP--------FVKPKSASQETHRKQKVKIVLTRQQLQFLLRNAKEFKS 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
           KG  V FS SF  ++R  +W+P+L TI EV
Sbjct: 121 KGFTVGFSTSFREENR--KWQPSLATIQEV 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KHP3_CUCSA4.9e-5881.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1[more]
B9HD50_POPTR6.9e-1235.53Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1[more]
A0A067KKV0_JATCU1.8e-0730.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1[more]
B9SA67_RICCO9.7e-0629.33Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862440 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700193834|gb|KGN49038.1|7.0e-5881.12hypothetical protein Csa_6G511050 [Cucumis sativus][more]
gi|1009107271|ref|XP_015878797.1|2.4e-1338.10PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba][more]
gi|224089779|ref|XP_002308812.1|9.9e-1235.53hypothetical protein POPTR_0006s01910g [Populus trichocarpa][more]
gi|643723314|gb|KDP32905.1|2.5e-0730.00hypothetical protein JCGZ_13686 [Jatropha curcas][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004960.1Lsi01G004960.1mRNA


The following gene(s) are paralogous to this gene:

None