CmoCh07G003500 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G003500
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 1624177 .. 1624512 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCAGCTCACCCCATCTCTACGATTTGGCTGTGCCAGTTGAGAAGATCGGCGCGGTGCTAGAAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGACGACGACGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAAGAACAGCTTGAGTTTCTTTTGACAAACTCCGAACAGTTTGGTTCTCAAGGCATTGCTGTTCAATTCTCTGATAATTTCAAGTTTGACCGATCGTGCTCTAGATGGTGCCCTGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

mRNA sequence

ATGGGAAATTGCATCAGCTCACCCCATCTCTACGATTTGGCTGTGCCAGTTGAGAAGATCGGCGCGGTGCTAGAAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGACGACGACGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAAGAACAGCTTGAGTTTCTTTTGACAAACTCCGAACAGTTTGGTTCTCAAGGCATTGCTGTTCAATTCTCTGATAATTTCAAGTTTGACCGATCGTGCTCTAGATGGTGCCCTGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

Coding sequence (CDS)

ATGGGAAATTGCATCAGCTCACCCCATCTCTACGATTTGGCTGTGCCAGTTGAGAAGATCGGCGCGGTGCTAGAAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGACGACGACGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAAGAACAGCTTGAGTTTCTTTTGACAAACTCCGAACAGTTTGGTTCTCAAGGCATTGCTGTTCAATTCTCTGATAATTTCAAGTTTGACCGATCGTGCTCTAGATGGTGCCCTGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA
Homology
[Close]
BLAST of CmoCh07G003500 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-22
Identity = 67/138 (48.55%), Postives = 77/138 (55.80%), Query Frame = 1 

Query: 1   MGNCISSPHL----------------YDLAVPVEKIGA-----------VLEVGRGAATP 60
           MGNCI++ H                  +LA+P+E I A           V E       P
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PAHVLIDDDDDITKPAALCKLPKATIVVSKEQLEFLLTNSEQFGSQGIAVQFSDNFKFDR 112
           P  V ID    I KPA LCKLPK TIVVSK+QLE +L  S+ FGS+GIAVQFSD+FK D 
Sbjct: 61  PLPVRIDHS--IVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDD 120

[Close]
BLAST of CmoCh07G003500 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-06
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 52  CKLPKATIVVSKEQLEFLLTNSEQFGSQGIAVQFSDNFKFDRSCSRWCPALPTILEVHNY 111
           C   K  IVV+++QLE LL NS+QF S+GIAV+FS++FK      +W P+L TI EV  +
Sbjct: 93  CASRKVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

[Close]
BLAST of CmoCh07G003500 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 2.2e-22
Identity = 67/138 (48.55%), Postives = 77/138 (55.80%), Query Frame = 1 

Query: 1   MGNCISSPHL----------------YDLAVPVEKIGA-----------VLEVGRGAATP 60
           MGNCI++ H                  +LA+P+E I A           V E       P
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PAHVLIDDDDDITKPAALCKLPKATIVVSKEQLEFLLTNSEQFGSQGIAVQFSDNFKFDR 112
           P  V ID    I KPA LCKLPK TIVVSK+QLE +L  S+ FGS+GIAVQFSD+FK D 
Sbjct: 61  PLPVRIDHS--IVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDD 120

[Close]
BLAST of CmoCh07G003500 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-06
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 52  CKLPKATIVVSKEQLEFLLTNSEQFGSQGIAVQFSDNFKFDRSCSRWCPALPTILEVHNY 111
           C   K  IVV+++QLE LL NS+QF S+GIAV+FS++FK      +W P+L TI EV  +
Sbjct: 93  CASRKVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

The following BLAST results are available for this feature:
BLAST of CmoCh07G003500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G003500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHP3_CUCSA1.5e-2248.55Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1[more]
B9HD50_POPTR4.5e-0650.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1[more]
BLAST of CmoCh07G003500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G003500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193834|gb|KGN49038.1|2.2e-2248.55hypothetical protein Csa_6G511050 [Cucumis sativus][more]
gi|224089779|ref|XP_002308812.1|6.4e-0650.00hypothetical protein POPTR_0006s01910g [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G003500.1CmoCh07G003500.1mRNA