Csa6G511050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G511050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 26330879 .. 26331551 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCGCTCTGTTTCGTTTTACAAGAGACAATGGGAAATTGCATCAACACACTCCATTTCCCACCTCTTCAAAAGATCAAAGGTTTCATTTGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCAATTGAAAACATAGCTGCTTGTAAAAACCAAGCTTTTACAACTTCAAGTGCAGTGGCTGAGGCTGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATCATTCAATTGTCAAGCCTGCAGATTTGTGCAAACTTCCTAAGACCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAAACTTTGGCTCTAAAGGTATTGCTGTTCAGTTCTCTGATAGTTTCAAGGTCGACGATGGATGCCCCAGATGGCACCCCGCCTTGCCCACCATTCCTGAGGTTCGCAATTACTAGTTTTGCCTCTTGTATTCGAGAAAATTTGGTCCATGAAGTTTTAAATCTGTGTCTAGAGAATAGGGGCTTTTTAGAAACTTTTTAAAAACTAGACAAGGACTTAGACTTATAATTCGTGTGGGAAATTTTGTATAGTTCTTTTTTACTGATCGGCTGCTAGAGACGTTTGCTCAGTTGGTATCATCCCGAATTGATTTTTAACAATGACTTTTCTTTATCTGGAGAAAGAAGCA

mRNA sequence

ATGGGAAATTGCATCAACACACTCCATTTCCCACCTCTTCAAAAGATCAAAGGTTTCATTTGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCAATTGAAAACATAGCTGCTTGTAAAAACCAAGCTTTTACAACTTCAAGTGCAGTGGCTGAGGCTGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATCATTCAATTGTCAAGCCTGCAGATTTGTGCAAACTTCCTAAGACCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAAACTTTGGCTCTAAAGGTATTGCTGTTCAGTTCTCTGATAGTTTCAAGGTCGACGATGGATGCCCCAGATGGCACCCCGCCTTGCCCACCATTCCTGAGGTTCGCAATTACTAG

Coding sequence (CDS)

ATGGGAAATTGCATCAACACACTCCATTTCCCACCTCTTCAAAAGATCAAAGGTTTCATTTGCTGTGAAGTAGAAGATTTAAACTTGGCATTGCCAATTGAAAACATAGCTGCTTGTAAAAACCAAGCTTTTACAACTTCAAGTGCAGTGGCTGAGGCTGAAGTTGAGCATGGCCCTCCTCCACTTCCTGTTCGTATTGATCATTCAATTGTCAAGCCTGCAGATTTGTGCAAACTTCCTAAGACCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAAATCCAAAAACTTTGGCTCTAAAGGTATTGCTGTTCAGTTCTCTGATAGTTTCAAGGTCGACGATGGATGCCCCAGATGGCACCCCGCCTTGCCCACCATTCCTGAGGTTCGCAATTACTAG

Protein sequence

MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGCPRWHPALPTIPEVRNY*
Homology
[Close]
BLAST of Csa6G511050 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60
           MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120
           PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC
Sbjct: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120

Query: 121 PRWHPALPTIPEVRNY 137
           PRWHPALPTIPEVRNY
Sbjct: 121 PRWHPALPTIPEVRNY 136

[Close]
BLAST of Csa6G511050 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-09
Identity = 51/156 (32.69%), Postives = 80/156 (51.28%), Query Frame = 1 

Query: 1   MGNCINTLHFPPLQKIKGFICCEVE-DLNLALPIENIAACKNQAFTTSSAVAEAEVEHGP 60
           MGNCI+ L +   ++ K  I    E +   +  ++ I + +   +     +  + + + P
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYM----LVHSALPYVP 60

Query: 61  PPLPVRIDHSIV--------KPADL-----------CKLPKTTIVVSKQQLELILRKSKN 120
            P   R++  +V        +P  L           C   K  IVV++QQLEL+LR SK 
Sbjct: 61  LPPDTRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQ 120

Query: 121 FGSKGIAVQFSDSFKVDDGCPRWHPALPTIPEVRNY 137
           F SKGIAV+FS+SFK  +G  +W P+L TIPEV+ +
Sbjct: 121 FRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

[Close]
BLAST of Csa6G511050 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 

Query: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60
           MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120
           PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC
Sbjct: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120

Query: 121 PRWHPALPTIPEVRNY 137
           PRWHPALPTIPEVRNY
Sbjct: 121 PRWHPALPTIPEVRNY 136

[Close]
BLAST of Csa6G511050 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 4.5e-09
Identity = 51/156 (32.69%), Postives = 80/156 (51.28%), Query Frame = 1 

Query: 1   MGNCINTLHFPPLQKIKGFICCEVE-DLNLALPIENIAACKNQAFTTSSAVAEAEVEHGP 60
           MGNCI+ L +   ++ K  I    E +   +  ++ I + +   +     +  + + + P
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYM----LVHSALPYVP 60

Query: 61  PPLPVRIDHSIV--------KPADL-----------CKLPKTTIVVSKQQLELILRKSKN 120
            P   R++  +V        +P  L           C   K  IVV++QQLEL+LR SK 
Sbjct: 61  LPPDTRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQ 120

Query: 121 FGSKGIAVQFSDSFKVDDGCPRWHPALPTIPEVRNY 137
           F SKGIAV+FS+SFK  +G  +W P+L TIPEV+ +
Sbjct: 121 FRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

[Close]
BLAST of Csa6G511050 vs. NCBI nr
Match: gi|1009107271|ref|XP_015878797.1| (PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba])

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 51/146 (34.93%), Postives = 72/146 (49.32%), Query Frame = 1 

Query: 1   MGNCINTLHFPPLQKIKGFICC-EVEDLNLALPIENIAA-------CKNQAFTTSSAVAE 60
           MGNCI     PP +KIK  +   EVE+   +  +E I +         ++A   SS    
Sbjct: 13  MGNCIKVSFRPPQEKIKAVVFNGEVEEFKASTSVEKITSGPYIGFKLVHRAQPHSSLPPN 72

Query: 61  AEVEHGP-PPLPVRIDHSIVKPA----DLCKLPKTTIVVSKQQLELILRKSKNFGSKG-I 120
           ++VE G   P   +    +V P     + CK  K  IV+++ QLEL+LR +K     G I
Sbjct: 73  SKVEPGHLVPYLTQPSKPLVSPKRANKESCKRQKVKIVLTRDQLELLLRGAKKLHPPGDI 132

Query: 121 AVQFSDSFKVDDGCPRWHPALPTIPE 133
           AVQ   SF  ++  P W P+L TIPE
Sbjct: 133 AVQMLKSFGFEEASPIWRPSLATIPE 158

The following BLAST results are available for this feature:
BLAST of Csa6G511050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHP3_CUCSA1.4e-73100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1[more]
B9HD50_POPTR3.1e-0932.69Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1[more]
BLAST of Csa6G511050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193834|gb|KGN49038.1|2.0e-73100.00hypothetical protein Csa_6G511050 [Cucumis sativus][more]
gi|224089779|ref|XP_002308812.1|4.5e-0932.69hypothetical protein POPTR_0006s01910g [Populus trichocarpa][more]
gi|1009107271|ref|XP_015878797.1|2.2e-0834.93PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU139209cucumber EST collection version 3.0transcribed_cluster
CU153742cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G511050.1Csa6G511050.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU153742CU153742transcribed_cluster
CU139209CU139209transcribed_cluster