CmoCh03G006140 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G006140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 5753702 .. 5754106 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATTGCATCAACACAGCCCATTTCCGACCTCTGCAAAAGTTGAAAGATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAGCTTATACAACTTCAAATGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCTGCCTGTTAGTATTGATGATGATGATGCTGTTAGCAAGCCTGATGCATTGTGCAAACTCCCCAAGACCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCCTAAGAAACTCCAGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGTTCGACGATCGATGCCCCAGATGGTGCCCCGCCTTGCCTACAATTCTCGAGGTACATAATTACTAG

mRNA sequence

ATGGGGAATTGCATCAACACAGCCCATTTCCGACCTCTGCAAAAGTTGAAAGATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAGCTTATACAACTTCAAATGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCTGCCTGTTAGTATTGATGATGATGATGCTGTTAGCAAGCCTGATGCATTGTGCAAACTCCCCAAGACCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCCTAAGAAACTCCAGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGTTCGACGATCGATGCCCCAGATGGTGCCCCGCCTTGCCTACAATTCTCGAGGTACATAATTACTAG

Coding sequence (CDS)

ATGGGGAATTGCATCAACACAGCCCATTTCCGACCTCTGCAAAAGTTGAAAGATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAGCTTATACAACTTCAAATGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCTGCCTGTTAGTATTGATGATGATGATGCTGTTAGCAAGCCTGATGCATTGTGCAAACTCCCCAAGACCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCCTAAGAAACTCCAGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGTTCGACGATCGATGCCCCAGATGGTGCCCCGCCTTGCCTACAATTCTCGAGGTACATAATTACTAG
Homology
[Close]
BLAST of CmoCh03G006140 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-43
Identity = 98/139 (70.50%), Postives = 108/139 (77.70%), Query Frame = 1 

Query: 1   MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIAS---GAYTTSNAVLE--VDRGAP 60
           MGNCINT HF PLQK+K  ICCE EDL+LALPIE IA+    A+TTS+AV E  V+ G P
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSDSFEFD 120
           PLPV ID   ++ KP  LCKLPK TTIVVSKQQLELILR S+ F SKGIAVQFSDSF+ D
Sbjct: 61  PLPVRIDH--SIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVD 120

Query: 121 DRCPRWCPALPTILEVHNY 135
           D CPRW PALPTI EV NY
Sbjct: 121 DGCPRWHPALPTIPEVRNY 136

[Close]
BLAST of CmoCh03G006140 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-09
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 1 

Query: 1   MGNCINTAHFRPLQKLKDLICCEGE-DLSLALPIEKIASGAYTTSNAVLEVDRGAPPLPV 60
           MGNCI+   +   ++ K LI   GE +   +  ++KI SG Y      + V    P +P+
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRY---GGYMLVHSALPYVPL 60

Query: 61  SIDDD----------DAVSKPDAL---CKLPKTTT-------IVVSKQQLELILRNSRKF 120
             D             ++ +P  L    KL    T       IVV++QQLEL+LRNS++F
Sbjct: 61  PPDTRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQF 120

Query: 121 ASKGIAVQFSDSFEFDDRCPRWCPALPTILEVHNY 135
            SKGIAV+FS+SF+  +R  +W P+L TI EV  +
Sbjct: 121 RSKGIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]
BLAST of CmoCh03G006140 vs. TrEMBL
Match: A0A067KKV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = 1 

Query: 1   MGNCINTAHFRPLQKLKDLICC-EGEDLSLALPIEKIASGAYTT--------------SN 60
           MGNCI+     P +K   L+   E ++   +  ++KI SG Y                SN
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  AVLEVDRGAPPLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIA 120
             LE       +P  +    A  +     K+     IV+++QQL+ +LRN+++F SKG  
Sbjct: 61  TKLEAGELYYLVPPFVKPKSASQETHRKQKVK----IVLTRQQLQFLLRNAKEFKSKGFT 120

Query: 121 VQFSDSFEFDDRCPRWCPALPTILEV 132
           V FS SF  ++R  +W P+L TI EV
Sbjct: 121 VGFSTSFREENR--KWQPSLATIQEV 140

[Close]
BLAST of CmoCh03G006140 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 7.9e-43
Identity = 98/139 (70.50%), Postives = 108/139 (77.70%), Query Frame = 1 

Query: 1   MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIAS---GAYTTSNAVLE--VDRGAP 60
           MGNCINT HF PLQK+K  ICCE EDL+LALPIE IA+    A+TTS+AV E  V+ G P
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSDSFEFD 120
           PLPV ID   ++ KP  LCKLPK TTIVVSKQQLELILR S+ F SKGIAVQFSDSF+ D
Sbjct: 61  PLPVRIDH--SIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVD 120

Query: 121 DRCPRWCPALPTILEVHNY 135
           D CPRW PALPTI EV NY
Sbjct: 121 DGCPRWHPALPTIPEVRNY 136

[Close]
BLAST of CmoCh03G006140 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-09
Identity = 55/155 (35.48%), Postives = 81/155 (52.26%), Query Frame = 1 

Query: 1   MGNCINTAHFRPLQKLKDLICCEGE-DLSLALPIEKIASGAYTTSNAVLEVDRGAPPLPV 60
           MGNCI+   +   ++ K LI   GE +   +  ++KI SG Y      + V    P +P+
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRY---GGYMLVHSALPYVPL 60

Query: 61  SIDDD----------DAVSKPDAL---CKLPKTTT-------IVVSKQQLELILRNSRKF 120
             D             ++ +P  L    KL    T       IVV++QQLEL+LRNS++F
Sbjct: 61  PPDTRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQF 120

Query: 121 ASKGIAVQFSDSFEFDDRCPRWCPALPTILEVHNY 135
            SKGIAV+FS+SF+  +R  +W P+L TI EV  +
Sbjct: 121 RSKGIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]
BLAST of CmoCh03G006140 vs. NCBI nr
Match: gi|643723314|gb|KDP32905.1| (hypothetical protein JCGZ_13686 [Jatropha curcas])

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = 1 

Query: 1   MGNCINTAHFRPLQKLKDLICC-EGEDLSLALPIEKIASGAYTT--------------SN 60
           MGNCI+     P +K   L+   E ++   +  ++KI SG Y                SN
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  AVLEVDRGAPPLPVSIDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIA 120
             LE       +P  +    A  +     K+     IV+++QQL+ +LRN+++F SKG  
Sbjct: 61  TKLEAGELYYLVPPFVKPKSASQETHRKQKVK----IVLTRQQLQFLLRNAKEFKSKGFT 120

Query: 121 VQFSDSFEFDDRCPRWCPALPTILEV 132
           V FS SF  ++R  +W P+L TI EV
Sbjct: 121 VGFSTSFREENR--KWQPSLATIQEV 140

[Close]
BLAST of CmoCh03G006140 vs. NCBI nr
Match: gi|1009107271|ref|XP_015878797.1| (PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba])

HSP 1 Score: 59.7 bits (143), Expect = 4.5e-06
Identity = 48/147 (32.65%), Postives = 68/147 (46.26%), Query Frame = 1 

Query: 1   MGNCINTAHFRPLQKLKDLICC-EGEDLSLALPIEKIASGAYTTSNAV--LEVDRGAPP- 60
           MGNCI  +   P +K+K ++   E E+   +  +EKI SG Y     V   +     PP 
Sbjct: 13  MGNCIKVSFRPPQEKIKAVVFNGEVEEFKASTSVEKITSGPYIGFKLVHRAQPHSSLPPN 72

Query: 61  --------LPVSIDDDDAVSKPDAL----CKLPKTTTIVVSKQQLELILRNSRKFASKG- 120
                   +P        +  P       CK  K   IV+++ QLEL+LR ++K    G 
Sbjct: 73  SKVEPGHLVPYLTQPSKPLVSPKRANKESCKRQKVK-IVLTRDQLELLLRGAKKLHPPGD 132

Query: 121 IAVQFSDSFEFDDRCPRWCPALPTILE 131
           IAVQ   SF F++  P W P+L TI E
Sbjct: 133 IAVQMLKSFGFEEASPIWRPSLATIPE 158

The following BLAST results are available for this feature:
BLAST of CmoCh03G006140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh03G006140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHP3_CUCSA5.5e-4370.50Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1[more]
B9HD50_POPTR1.8e-0935.48Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1[more]
A0A067KKV0_JATCU1.1e-0631.51Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1[more]
BLAST of CmoCh03G006140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh03G006140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193834|gb|KGN49038.1|7.9e-4370.50hypothetical protein Csa_6G511050 [Cucumis sativus][more]
gi|224089779|ref|XP_002308812.1|2.6e-0935.48hypothetical protein POPTR_0006s01910g [Populus trichocarpa][more]
gi|643723314|gb|KDP32905.1|1.6e-0631.51hypothetical protein JCGZ_13686 [Jatropha curcas][more]
gi|1009107271|ref|XP_015878797.1|4.5e-0632.65PREDICTED: uncharacterized protein LOC107415043 [Ziziphus jujuba][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G006140.1CmoCh03G006140.1mRNA