CmaCh07G003580 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G003580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr07 : 1534163 .. 1534564 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATTGCATCAGCTCACCCCATCTCCCGCCGTTCCAAAGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGAGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGGGCGGTGCTAGTAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGATGATGATGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAACAACAGCTCGAGTTTCTTTTGACAAACTCCGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATCGTTTCAAGTTTGACCAATCGTGTTCTAAATGGTGCCCCGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

mRNA sequence

ATGGGAAATTGCATCAGCTCACCCCATCTCCCGCCGTTCCAAAGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGAGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGGGCGGTGCTAGTAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGATGATGATGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAACAACAGCTCGAGTTTCTTTTGACAAACTCCGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATCGTTTCAAGTTTGACCAATCGTGTTCTAAATGGTGCCCCGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

Coding sequence (CDS)

ATGGGAAATTGCATCAGCTCACCCCATCTCCCGCCGTTCCAAAGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGAGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGGGCGGTGCTAGTAGTTGGGCGTGGGGCTGCTACGCCTCCCGCTCATGTTCTTATTGATGATGATGATGATATTACCAAGCCTGCAGCTTTGTGCAAACTTCCCAAGGCCACCATTGTTGTTAGCAAACAACAGCTCGAGTTTCTTTTGACAAACTCCGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATCGTTTCAAGTTTGACCAATCGTGTTCTAAATGGTGCCCCGCCTTACCCACCATTCTCGAAGTTCATAATTACTAA

Protein sequence

MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLKLTRAVLVVGRGAATPPAHVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSCSKWCPALPTILEVHNY
Homology
[Close]
BLAST of CmaCh07G003580 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.1e-30
Identity = 73/136 (53.68%), Postives = 86/136 (63.24%), Query Frame = 1 

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLK---LTRAVLVVGRGAATPPA 60
           MGNCI++ H PP Q+IK F+C   E  +LA P+E IA  K    T +  V        P 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  HVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSC 120
            + +  D  I KPA LCKLPK TIVVSKQQLE +L  S+ FGS+GIAVQFSD FK D  C
Sbjct: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120

Query: 121 SKWCPALPTILEVHNY 134
            +W PALPTI EV NY
Sbjct: 121 PRWHPALPTIPEVRNY 136

[Close]
BLAST of CmaCh07G003580 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-06
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 74  CKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSCSKWCPALPTILEVHNY 133
           C   K  IVV++QQLE LL NS+QF S+GIAV+FS+ FK  +   KW P+L TI EV  +
Sbjct: 93  CASRKVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

[Close]
BLAST of CmaCh07G003580 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 73/136 (53.68%), Postives = 86/136 (63.24%), Query Frame = 1 

Query: 1   MGNCISSPHLPPFQRIKDFMCLHEELYDLAEPVEKIAGLK---LTRAVLVVGRGAATPPA 60
           MGNCI++ H PP Q+IK F+C   E  +LA P+E IA  K    T +  V        P 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  HVLIDDDDDITKPAALCKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSC 120
            + +  D  I KPA LCKLPK TIVVSKQQLE +L  S+ FGS+GIAVQFSD FK D  C
Sbjct: 61  PLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDDGC 120

Query: 121 SKWCPALPTILEVHNY 134
            +W PALPTI EV NY
Sbjct: 121 PRWHPALPTIPEVRNY 136

[Close]
BLAST of CmaCh07G003580 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-06
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1 

Query: 74  CKLPKATIVVSKQQLEFLLTNSEQFGSQGIAVQFSDRFKFDQSCSKWCPALPTILEVHNY 133
           C   K  IVV++QQLE LL NS+QF S+GIAV+FS+ FK  +   KW P+L TI EV  +
Sbjct: 93  CASRKVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

The following BLAST results are available for this feature:
BLAST of CmaCh07G003580 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G003580 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHP3_CUCSA1.1e-3053.68Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1[more]
B9HD50_POPTR1.4e-0653.33Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1[more]
BLAST of CmaCh07G003580 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh07G003580 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193834|gb|KGN49038.1|1.5e-3053.68hypothetical protein Csa_6G511050 [Cucumis sativus][more]
gi|224089779|ref|XP_002308812.1|2.0e-0653.33hypothetical protein POPTR_0006s01910g [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G003580.1CmaCh07G003580.1mRNA