CmaCh03G005880 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G005880
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr03 : 5274805 .. 5275245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAATTGCATCAACGCAGCCCATTTCCGACCTCTGCAAAAGTTGAAACATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAACTTATAAAGGCCTAAACCTAACAACCCAAGACTTTACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGCTGAATTGTGCAAACTCCCCAAGATCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCTTGAGAAACTCCGGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGTTCGACGATCGACGCCCCAGGTGGTGCCCCGCCTTGCCTACAATTCTCGAGGTTCATAATTACTAG

mRNA sequence

ATGGGGAATTGCATCAACGCAGCCCATTTCCGACCTCTGCAAAAGTTGAAACATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAACTTATAAAGGCCTAAACCTAACAACCCAAGACTTTACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGCTGAATTGTGCAAACTCCCCAAGATCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCTTGAGAAACTCCGGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGTTCGACGATCGACGCCCCAGGTGGTGCCCCGCCTTGCCTACAATTCTCGAGGTTCATAATTACTAG

Coding sequence (CDS)

ATGGGGAATTGCATCAACGCAGCCCATTTCCGACCTCTGCAAAAGTTGAAACATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAACTTATAAAGGCCTAAACCTAACAACCCAAGACTTTACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGCTGAATTGTGCAAACTCCCCAAGATCACCACCATTGTGGTTAGCAAACAACAGCTCGAGTTGATCTTGAGAAACTCCGGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGTTCGACGATCGACGCCCCAGGTGGTGCCCCGCCTTGCCTACAATTCTCGAGGTTCATAATTACTAG

Protein sequence

MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEVDRGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQFSDSFEFDDRRPRWCPALPTILEVHNY

Homology

[Close]

BLAST of CmaCh03G005880 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.9e-42
Identity = 99/147 (67.35%), Postives = 107/147 (72.79%), Query Frame = 1


Query: 1   MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEV 60
           MGNCIN  HF PLQK+K  ICCE EDL+LALPIE IA+          Q FTTSSAV E 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA-------CKNQAFTTSSAVAEA 60

Query: 61  D-RGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQ 120
           +    PPPLPVRID    ++ KPA+LCKLPK TTIVVSKQQLELILR S  F SKGIAVQ
Sbjct: 61  EVEHGPPPLPVRIDH---SIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQ 120

Query: 121 FSDSFEFDDRRPRWCPALPTILEVHNY 147
           FSDSF+ DD  PRW PALPTI EV NY
Sbjct: 121 FSDSFKVDDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of CmaCh03G005880 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 1   MGNCINAAHFRPLQKLKHLICCEGE-DLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLE 60
           MGNCI+   +   ++ K LI   GE +   +  ++KI SG Y G  L           L 
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHS--ALPYVPLP 60

Query: 61  VDRGAPPPL----------PVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSG 120
            D    P +          P R++       +  E C   K+  IVV++QQLEL+LRNS 
Sbjct: 61  PDTRLEPGVVYYLMPSLGQPCRLEVSSKLAGQ--ETCASRKVK-IVVTRQQLELLLRNSK 120

Query: 121 KFASKGIAVQFSDSFEFDDRRPRWCPALPTILEVHNY 147
           +F SKGIAV+FS+SF+  +R  +W P+L TI EV  +
Sbjct: 121 QFRSKGIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of CmaCh03G005880 vs. TrEMBL
Match: A0A067KKV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-06
Identity = 46/151 (30.46%), Postives = 76/151 (50.33%), Query Frame = 1


Query: 1   MGNCINAAHFRPLQKLKHLICC-EGEDLSLALPIEKIASGTYKGLNLTTQ--DFTTSSAV 60
           MGNCI+     P +K   L+   E ++   +  ++KI SG Y+   +      F+   + 
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  LEVDRG-----APPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFA 120
            +++ G      PP +  +        S   E  +  K+  IV+++QQL+ +LRN+ +F 
Sbjct: 61  TKLEAGELYYLVPPFVKPK--------SASQETHRKQKVK-IVLTRQQLQFLLRNAKEFK 120

Query: 121 SKGIAVQFSDSFEFDDRRPRWCPALPTILEV 144
           SKG  V FS SF  ++R  +W P+L TI EV
Sbjct: 121 SKGFTVGFSTSFREENR--KWQPSLATIQEV 140

[Close]

BLAST of CmaCh03G005880 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 5.6e-42
Identity = 99/147 (67.35%), Postives = 107/147 (72.79%), Query Frame = 1


Query: 1   MGNCINAAHFRPLQKLKHLICCEGEDLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLEV 60
           MGNCIN  HF PLQK+K  ICCE EDL+LALPIE IA+          Q FTTSSAV E 
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA-------CKNQAFTTSSAVAEA 60

Query: 61  D-RGAPPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFASKGIAVQ 120
           +    PPPLPVRID    ++ KPA+LCKLPK TTIVVSKQQLELILR S  F SKGIAVQ
Sbjct: 61  EVEHGPPPLPVRIDH---SIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQ 120

Query: 121 FSDSFEFDDRRPRWCPALPTILEVHNY 147
           FSDSF+ DD  PRW PALPTI EV NY
Sbjct: 121 FSDSFKVDDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of CmaCh03G005880 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 56/157 (35.67%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 1   MGNCINAAHFRPLQKLKHLICCEGE-DLSLALPIEKIASGTYKGLNLTTQDFTTSSAVLE 60
           MGNCI+   +   ++ K LI   GE +   +  ++KI SG Y G  L           L 
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHS--ALPYVPLP 60

Query: 61  VDRGAPPPL----------PVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSG 120
            D    P +          P R++       +  E C   K+  IVV++QQLEL+LRNS 
Sbjct: 61  PDTRLEPGVVYYLMPSLGQPCRLEVSSKLAGQ--ETCASRKVK-IVVTRQQLELLLRNSK 120

Query: 121 KFASKGIAVQFSDSFEFDDRRPRWCPALPTILEVHNY 147
           +F SKGIAV+FS+SF+  +R  +W P+L TI EV  +
Sbjct: 121 QFRSKGIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of CmaCh03G005880 vs. NCBI nr
Match: gi|643723314|gb|KDP32905.1| (hypothetical protein JCGZ_13686 [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 4.9e-06
Identity = 46/151 (30.46%), Postives = 76/151 (50.33%), Query Frame = 1


Query: 1   MGNCINAAHFRPLQKLKHLICC-EGEDLSLALPIEKIASGTYKGLNLTTQ--DFTTSSAV 60
           MGNCI+     P +K   L+   E ++   +  ++KI SG Y+   +      F+   + 
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  LEVDRG-----APPPLPVRIDDDDDAVSKPAELCKLPKITTIVVSKQQLELILRNSGKFA 120
            +++ G      PP +  +        S   E  +  K+  IV+++QQL+ +LRN+ +F 
Sbjct: 61  TKLEAGELYYLVPPFVKPK--------SASQETHRKQKVK-IVLTRQQLQFLLRNAKEFK 120

Query: 121 SKGIAVQFSDSFEFDDRRPRWCPALPTILEV 144
           SKG  V FS SF  ++R  +W P+L TI EV
Sbjct: 121 SKGFTVGFSTSFREENR--KWQPSLATIQEV 140

The following BLAST results are available for this feature:

BLAST of CmaCh03G005880 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh03G005880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP3_CUCSA	3.9e-42	67.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1	[more]
B9HD50_POPTR	1.8e-10	35.67	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1	[more]
A0A067KKV0_JATCU	3.4e-06	30.46	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1	[more]

BLAST of CmaCh03G005880 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh03G005880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193834\|gb\|KGN49038.1\|	5.6e-42	67.35	hypothetical protein Csa_6G511050 [Cucumis sativus]	[more]
gi\|224089779\|ref\|XP_002308812.1\|	2.5e-10	35.67	hypothetical protein POPTR_0006s01910g [Populus trichocarpa]	[more]
gi\|643723314\|gb\|KDP32905.1\|	4.9e-06	30.46	hypothetical protein JCGZ_13686 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh03G005880.1	CmaCh03G005880.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh03G005880	Cla014390	Watermelon (97103) v1	cmawmB632
CmaCh03G005880	Csa6G511050	Cucumber (Chinese Long) v2	cmacuB681
CmaCh03G005880	MELO3C008013	Melon (DHL92) v3.5.1	cmameB617
CmaCh03G005880	ClCG01G021280	Watermelon (Charleston Gray)	cmawcgB579
CmaCh03G005880	CSPI06G32840	Wild cucumber (PI 183967)	cmacpiB689
CmaCh03G005880	CmoCh03G006140	Cucurbita moschata (Rifu)	cmacmoB653
CmaCh03G005880	CmoCh07G003500	Cucurbita moschata (Rifu)	cmacmoB667
CmaCh03G005880	Lsi01G004960	Bottle gourd (USVL1VR-Ls)	cmalsiB597
CmaCh03G005880	Cp4.1LG10g09980	Cucurbita pepo (Zucchini)	cmacpeB656
CmaCh03G005880	Cp4.1LG19g08090	Cucurbita pepo (Zucchini)	cmacpeB671
CmaCh03G005880	MELO3C008013.2	Melon (DHL92) v3.6.1	cmamedB703
CmaCh03G005880	CsaV3_6G048300	Cucumber (Chinese Long) v3	cmacucB0809
CmaCh03G005880	Cla97C01G020850	Watermelon (97103) v2	cmawmbB670
CmaCh03G005880	Bhi03G000516	Wax gourd	cmawgoB0788

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh03G005880	CmaCh07G003580	Cucurbita maxima (Rimu)	cmacmaB523

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh03G005880	Cucurbita maxima (Rimu)	cmacmaB233
CmaCh03G005880	Cucurbita maxima (Rimu)	cmacmaB399
CmaCh03G005880	Cucumber (Gy14) v1	cgycmaB0047
CmaCh03G005880	Cucurbita pepo (Zucchini)	cmacpeB676
CmaCh03G005880	Cucumber (Gy14) v2	cgybcmaB128
CmaCh03G005880	Cucumber (Gy14) v2	cgybcmaB831
CmaCh03G005880	Silver-seed gourd	carcmaB0567
CmaCh03G005880	Silver-seed gourd	carcmaB0912