Cla97C01G020850 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G020850
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr01 : 33334558 .. 33334983 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTCAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGATAGCTTATGGAGCTTATAAAGGCTTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCAGTGCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTCTTCGTATTGATGATTCTATTATCAAGCCAGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAATTCTAAAAGCTTTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

mRNA sequence

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTCAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGATAGCTTATGGAGCTTATAAAGGCTTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCAGTGCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTCTTCGTATTGATGATTCTATTATCAAGCCAGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAATTCTAAAAGCTTTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Coding sequence (CDS)

ATGGGAAATTGCATCAACACACCCCATTTCCCACCTCTGCAAAAGATCAAAGGCTTCATATGCTGTCAAGTAGAAGATTTAAACTTGGCATTGCCCATTGAAAAGATAGCTTATGGAGCTTATAAAGGCTTAAAGCTAACAAGTCAAGCCTTTACAACTTCGAGTGCAGTGCTAGAAGTTGAGCATGGCCCTCCTCCACTTCCTCTTCGTATTGATGATTCTATTATCAAGCCAGCAGATTTGTGCAAACTTCCTAAGGCCACCATTGTAGTCAGCAAACAACAGCTTGAGTTGATTTTGAGAAATTCTAAAAGCTTTGGCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTCGAGGTCGACGATCGATGCCCCAGATGGCGCCCCGCCTTGCCTACCATTCCAGAGGTTCGCAATTACTAG

Protein sequence

MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLEVEHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY

Homology

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BLAST of Cla97C01G020850 vs. NCBI nr
Match: KGN49038.1 (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 117/143 (81.82%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAV--L 60
           MGNCINT HFPPLQKIKGFICC+VEDLNLALPIE IA          +QAFTTSSAV   
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  EVEHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDS 120
           EVEHGPPPLP+RID SI+KPADLCKLPK TIVVSKQQLELILR SK+FGSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of Cla97C01G020850 vs. NCBI nr
Match: PNT29232.1 (hypothetical protein POPTR_006G018200v3 [Populus trichocarpa])

HSP 1 Score: 84.0 bits (206), Expect = 4.6e-13
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVE-DLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++KI  G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PLRID-DSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LRNSK F SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of Cla97C01G020850 vs. NCBI nr
Match: PQQ11255.1 (hypothetical protein Pyn_06292 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 58/153 (37.91%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQ-VEDLNLALPIEKIAYGAYKGLKLTS--QAFT----- 60
           MGNC++    PP +KIK  I  + V +   + PIE+I  G Y G KL    Q FT     
Sbjct: 13  MGNCLHVLCHPPQEKIKVVIFKRGVREFKASTPIEEITSGPYIGYKLVHHVQPFTPLPPN 72

Query: 61  TSSAVLEVEHGPP---PLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGS- 120
           T     EV H  P    L   +  S I   + CK  K  IVV+++QLEL+L+ +  F S 
Sbjct: 73  TKLEPGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKTANKFRSP 132

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           K I VQ S    ++   P+WRP+L  IPEV ++
Sbjct: 133 KEIGVQLSGRSGLEGP-PKWRPSLAIIPEVHSF 164

[Close]

BLAST of Cla97C01G020850 vs. NCBI nr
Match: PQP96268.1 (hypothetical protein Pyn_29074 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 74.7 bits (182), Expect = 2.8e-10
Identity = 58/153 (37.91%), Postives = 79/153 (51.63%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFIC-CQVEDLNLALPIEKIAYGAYKGLKLTS--QAFT----- 60
           MGNC++    PP +KIK  I    V +   + PIE+I  G Y G KL    Q FT     
Sbjct: 1   MGNCLHVLCHPPQEKIKVVIFKGGVREFKASTPIEEITSGPYIGYKLVHHVQPFTPLPPN 60

Query: 61  TSSAVLEVEHGPP---PLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGS- 120
           T     EV H  P    L   +  S I   + CK  K  IVV+++QLEL+L+++  F S 
Sbjct: 61  TKLEPGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           K I VQ S    ++   P+WRP+L  IPEV ++
Sbjct: 121 KEIGVQLSGRSGLEGP-PKWRPSLAIIPEVHSF 152

[Close]

BLAST of Cla97C01G020850 vs. NCBI nr
Match: OAY41144.1 (hypothetical protein MANES_09G078000 [Manihot esculenta])

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFIC-CQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAV-- 60
           MGNCI+     P +K +  +   + ++   +  ++KI  G Y+GLK+   A   S     
Sbjct: 1   MGNCIDVMCHQPAEKSRVIMFNGEEKEFKASTTVKKITSGRYRGLKIVHHALPLSPLPPN 60

Query: 61  LEVEHG------PP---PLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGS 120
             +E G      PP   P  L++   +   A  C   K  IV+++QQL+L+LRN++ F S
Sbjct: 61  TRLEPGELYYLVPPLVKPKSLKVSSKLANQA-TCTKKKVKIVLTRQQLDLLLRNAE-FKS 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPE 138
           KG+AVQFS SF    R  +W+P+L TI E
Sbjct: 121 KGVAVQFSGSFSEPGR--KWQPSLATIQE 145

[Close]

BLAST of Cla97C01G020850 vs. TrEMBL
Match: tr|A0A0A0KHP3|A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.1e-58
Identity = 117/143 (81.82%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAV--L 60
           MGNCINT HFPPLQKIKGFICC+VEDLNLALPIE IA          +QAFTTSSAV   
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIA-------ACKNQAFTTSSAVAEA 60

Query: 61  EVEHGPPPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSKGIAVQFSDS 120
           EVEHGPPPLP+RID SI+KPADLCKLPK TIVVSKQQLELILR SK+FGSKGIAVQFSDS
Sbjct: 61  EVEHGPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDS 120

Query: 121 FEVDDRCPRWRPALPTIPEVRNY 142
           F+VDD CPRW PALPTIPEVRNY
Sbjct: 121 FKVDDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of Cla97C01G020850 vs. TrEMBL
Match: tr|B9HD50|B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200v3 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.0e-13
Identity = 57/152 (37.50%), Postives = 81/152 (53.29%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVE-DLNLALPIEKIAYGAYKGLKLTSQAFTTSSAVLE 60
           MGNCI+   +   ++ K  I    E +   +  ++KI  G Y G  L   A        +
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VEHGP-------PPL--PLRID-DSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGSK 120
               P       P L  P R++  S +   + C   K  IVV++QQLEL+LRNSK F SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           GIAV+FS+SF+  +R  +WRP+L TIPEV+ +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of Cla97C01G020850 vs. TrEMBL
Match: tr|A0A2C9VA09|A0A2C9VA09_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G078000 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.4e-10
Identity = 52/149 (34.90%), Postives = 79/149 (53.02%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFIC-CQVEDLNLALPIEKIAYGAYKGLKLTSQAFTTSSAV-- 60
           MGNCI+     P +K +  +   + ++   +  ++KI  G Y+GLK+   A   S     
Sbjct: 1   MGNCIDVMCHQPAEKSRVIMFNGEEKEFKASTTVKKITSGRYRGLKIVHHALPLSPLPPN 60

Query: 61  LEVEHG------PP---PLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGS 120
             +E G      PP   P  L++   +   A  C   K  IV+++QQL+L+LRN++ F S
Sbjct: 61  TRLEPGELYYLVPPLVKPKSLKVSSKLANQA-TCTKKKVKIVLTRQQLDLLLRNAE-FKS 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPE 138
           KG+AVQFS SF    R  +W+P+L TI E
Sbjct: 121 KGVAVQFSGSFSEPGR--KWQPSLATIQE 145

[Close]

BLAST of Cla97C01G020850 vs. TrEMBL
Match: tr|A0A2P4ITD9|A0A2P4ITD9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31887 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.1e-10
Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFICCQVE-DLNLALPIEKIAYGAYKGLKLT--SQAFTTSSAV 60
           MGNC+N   +   +KIK  I    E + N + P+EKI  G Y G KL   +Q ++     
Sbjct: 1   MGNCMNVLSYSQKKKIKVLIFNGGEKEFNASTPVEKITSGPYNGFKLVHHAQPYSPLPPN 60

Query: 61  LEVEHGPP--PLPLRIDDSI----IKPAD--LCKLPKATIVVSKQQLELILRNSKSFGSK 120
             +E G     +PL    +      K A+    K     IVV+K+Q + +LR++K F S+
Sbjct: 61  TRLEPGEVYYLVPLLTQPNFPWMSSKTANHKTGKRRTIKIVVTKEQFQFLLRSTKKFLSE 120

Query: 121 GIAVQFSDSFEVDDRCPRWRPALPTIPEV 139
            I+V+    F+V + C +W+P+L TIPEV
Sbjct: 121 EISVRSLGGFQVGEGCQKWQPSLATIPEV 149

[Close]

BLAST of Cla97C01G020850 vs. TrEMBL
Match: tr|A0A251PDS0|A0A251PDS0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 0


Query: 1   MGNCINTPHFPPLQKIKGFIC-CQVEDLNLALPIEKIAYGAYKGLKLTS--QAFTTSSAV 60
           MGNC++    PP +KIK  I    V +   + PIE+I  G Y G KL    + +T     
Sbjct: 1   MGNCLHVLCHPPREKIKVVIFKGGVLEFKASTPIEEITSGPYIGYKLVHHVRPYTPLPPN 60

Query: 61  LEVEHGP--------PPLPLRIDDSIIKPADLCKLPKATIVVSKQQLELILRNSKSFGS- 120
            ++E G           L   +  S I   + CK  K  IVV+++QLEL+L+++  F S 
Sbjct: 61  TKLEQGEVYHLVPNLASLGKPLVPSKIVHQESCKRQKIKIVVTREQLELLLKSANKFRSP 120

Query: 121 KGIAVQFSDSFEVDDRCPRWRPALPTIPEVRNY 142
           K I VQ S    ++   P+WRP+L  IPEV ++
Sbjct: 121 KEIGVQLSGRSGLEG-SPKWRPSLAIIPEVHSF 152

The following BLAST results are available for this feature:

BLAST of Cla97C01G020850 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49038.1	1.6e-58	81.82	hypothetical protein Csa_6G511050 [Cucumis sativus]	[more]
PNT29232.1	4.6e-13	37.50	hypothetical protein POPTR_006G018200v3 [Populus trichocarpa]	[more]
PQQ11255.1	1.6e-10	37.91	hypothetical protein Pyn_06292 [Prunus yedoensis var. nudiflora]	[more]
PQP96268.1	2.8e-10	37.91	hypothetical protein Pyn_29074 [Prunus yedoensis var. nudiflora]	[more]
OAY41144.1	3.6e-10	34.90	hypothetical protein MANES_09G078000 [Manihot esculenta]	[more]

BLAST of Cla97C01G020850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHP3\|A0A0A0KHP3_CUCSA	1.1e-58	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1	[more]
tr\|B9HD50\|B9HD50_POPTR	3.0e-13	37.50	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200v3 PE=...	[more]
tr\|A0A2C9VA09\|A0A2C9VA09_MANES	2.4e-10	34.90	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G078000 PE=4 SV=...	[more]
tr\|A0A2P4ITD9\|A0A2P4ITD9_QUESU	9.1e-10	34.23	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_31887 PE=4 SV=1	[more]
tr\|A0A251PDS0\|A0A251PDS0_PRUPE	1.6e-09	34.64	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1	[more]

BLAST of Cla97C01G020850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G020850 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G020850.1	Cla97C01G020850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G020850	Cla014390	Watermelon (97103) v1	wmwmbB234
Cla97C01G020850	Csa6G511050	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G020850	MELO3C008013	Melon (DHL92) v3.5.1	mewmbB513
Cla97C01G020850	ClCG01G021280	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G020850	CSPI06G32840	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G020850	CmaCh03G005880	Cucurbita maxima (Rimu)	cmawmbB670
Cla97C01G020850	CmaCh07G003580	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G020850	CmoCh07G003500	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G020850	CmoCh03G006140	Cucurbita moschata (Rifu)	cmowmbB642
Cla97C01G020850	Lsi01G004960	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G020850	MELO3C008013.2	Melon (DHL92) v3.6.1	medwmbB505
Cla97C01G020850	CsaV3_6G048300	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G020850	Bhi03G000516	Wax gourd	wgowmbB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G020850	Watermelon (97103) v2	wmbwmbB000
Cla97C01G020850	Silver-seed gourd	carwmbB0426
Cla97C01G020850	Silver-seed gourd	carwmbB0669
Cla97C01G020850	Cucumber (Gy14) v2	cgybwmbB006
Cla97C01G020850	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G020850	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G020850	Cucurbita maxima (Rimu)	cmawmbB402
Cla97C01G020850	Wild cucumber (PI 183967)	cpiwmbB005
Cla97C01G020850	Cucumber (Chinese Long) v2	cuwmbB005
Cla97C01G020850	Bottle gourd (USVL1VR-Ls)	lsiwmbB160
Cla97C01G020850	Melon (DHL92) v3.5.1	mewmbB139