MELO3C008013.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C008013.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr08 : 6753656 .. 6754316 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAGAGAAAATGGGAAATTGCATCAACACACACCATTTCCCACCTCTGCAAAAGATCAAAGGTTTCATATGCTGTGAAGTAGAAGGTTTAGACTTGGGATTGCCAATTGGAAACGTAGCTGCTTATGGAGATTGTAAAAGCCAAGCTTTTACAACTTCAAGTGCAGTGGCTGAAGTTCAGCATAGCCCTCCTCCACTTCCTGTTCGTATTGATCATTCAATTGTCAAGCCTGCAGATAAAAGCAAACTTCCCAAGGCCACCATTGTAGTAAGCAAACAACAACTTGAGTTAATTTTGAGAAAATCCAAAAACTTTGGCTCTAAAGGTATTGCTGTTCAGTTCTCTGATCGTTTCAAGGTCGACGATGGCTGCCCCAGATGGCACCCTGCCTTGCCCACCATTCCTGAGGTTCGCAATTACTAATTTTGCCTTTTATATTGGAGAAAATTTTATCCATGATGTATTAAATCTGCGTCTAAAGAATAGGGACTTTTTAGAAACTTTTTTTCAACTAGACAAGGACTAAATAGACTTGTAATTCGTTTGGGAAATTTTGTATAGTTCTTTTTACTGATCGGCTGCTAGAGACGTTTGCTCGGTATTATCCCGAATTGATTTTCAACAAGGACCTTTTTTATGGAGAAAGAAGGAATTTTATAC

mRNA sequence

ACAAGAGAAAATGGGAAATTGCATCAACACACACCATTTCCCACCTCTGCAAAAGATCAAAGGTTTCATATGCTGTGAAGTAGAAGGTTTAGACTTGGGATTGCCAATTGGAAACGTAGCTGCTTATGGAGATTGTAAAAGCCAAGCTTTTACAACTTCAAGTGCAGTGGCTGAAGTTCAGCATAGCCCTCCTCCACTTCCTGTTCGTATTGATCATTCAATTGTCAAGCCTGCAGATAAAAGCAAACTTCCCAAGGCCACCATTGTAGTAAGCAAACAACAACTTGAGTTAATTTTGAGAAAATCCAAAAACTTTGGCTCTAAAGGTATTGCTGTTCAGTTCTCTGATCGTTTCAAGGTCGACGATGGCTGCCCCAGATGGCACCCTGCCTTGCCCACCATTCCTGAGGTTCGCAATTACTAATTTTGCCTTTTATATTGGAGAAAATTTTATCCATGATGTATTAAATCTGCGTCTAAAGAATAGGGACTTTTTAGAAACTTTTTTTCAACTAGACAAGGACTAAATAGACTTGTAATTCGTTTGGGAAATTTTGTATAGTTCTTTTTACTGATCGGCTGCTAGAGACGTTTGCTCGGTATTATCCCGAATTGATTTTCAACAAGGACCTTTTTTATGGAGAAAGAAGGAATTTTATAC

Coding sequence (CDS)

ATGGGAAATTGCATCAACACACACCATTTCCCACCTCTGCAAAAGATCAAAGGTTTCATATGCTGTGAAGTAGAAGGTTTAGACTTGGGATTGCCAATTGGAAACGTAGCTGCTTATGGAGATTGTAAAAGCCAAGCTTTTACAACTTCAAGTGCAGTGGCTGAAGTTCAGCATAGCCCTCCTCCACTTCCTGTTCGTATTGATCATTCAATTGTCAAGCCTGCAGATAAAAGCAAACTTCCCAAGGCCACCATTGTAGTAAGCAAACAACAACTTGAGTTAATTTTGAGAAAATCCAAAAACTTTGGCTCTAAAGGTATTGCTGTTCAGTTCTCTGATCGTTTCAAGGTCGACGATGGCTGCCCCAGATGGCACCCTGCCTTGCCCACCATTCCTGAGGTTCGCAATTACTAA

Protein sequence

MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVAAYGDCKSQAFTTSSAVAEVQHSPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY

Homology

[Close]

BLAST of MELO3C008013.2 vs. NCBI nr
Match: KGN49038.1 (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 2.0e-61
Identity = 121/139 (87.05%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVAAYGDCKSQAFTTSSAV--AEVQH 60
           MGNCINT HFPPLQKIKGFICCEVE L+L LPI N+AA   CK+QAFTTSSAV  AEV+H
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA---CKNQAFTTSSAVAEAEVEH 60

Query: 61  SPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFKVD 120
            PPPLPVRIDHSIVKPAD  KLPK TIVVSKQQLELILRKSKNFGSKGIAVQFSD FKVD
Sbjct: 61  GPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVD 120

Query: 121 DGCPRWHPALPTIPEVRNY 138
           DGCPRWHPALPTIPEVRNY
Sbjct: 121 DGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of MELO3C008013.2 vs. NCBI nr
Match: PNT29232.1 (hypothetical protein POPTR_006G018200v3 [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 5.6e-08
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 82  KATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 138
           K  IVV++QQLEL+LR SK F SKGIAV+FS+ FK  +G  +W P+L TIPEV+ +
Sbjct: 97  KVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

[Close]

BLAST of MELO3C008013.2 vs. NCBI nr
Match: PQP96268.1 (hypothetical protein Pyn_29074 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 60.1 bits (144), Expect = 6.9e-06
Identity = 53/161 (32.92%), Postives = 73/161 (45.34%), Query Frame = 0


Query: 1   MGNCINTHHFPPLQKIKGFI----------CCEVEGLDLGLPIGNVAAYGDCKSQAFT-- 60
           MGNC++    PP +KIK  I             +E +  G  IG    +     Q FT  
Sbjct: 1   MGNCLHVLCHPPQEKIKVVIFKGGVREFKASTPIEEITSGPYIGYKLVH---HVQPFTPL 60

Query: 61  ---TSSAVAEVQHSPPPL--------PVRIDHSIVKPADKSKLPKATIVVSKQQLELILR 120
              T     EV H  P L        P +I H      +  K  K  IVV+++QLEL+L+
Sbjct: 61  PPNTKLEPGEVYHLVPNLASLGKPLVPSKIVHQ-----ESCKRQKIKIVVTREQLELLLK 120

Query: 121 KSKNFGS-KGIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 138
            +  F S K I VQ S R  + +G P+W P+L  IPEV ++
Sbjct: 121 SANKFRSPKEIGVQLSGRSGL-EGPPKWRPSLAIIPEVHSF 152

[Close]

BLAST of MELO3C008013.2 vs. NCBI nr
Match: PQQ11255.1 (hypothetical protein Pyn_06292 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 59.7 bits (143), Expect = 9.0e-06
Identity = 53/161 (32.92%), Postives = 73/161 (45.34%), Query Frame = 0


Query: 1   MGNCINTHHFPPLQKIKGFI----------CCEVEGLDLGLPIGNVAAYGDCKSQAFT-- 60
           MGNC++    PP +KIK  I             +E +  G  IG    +     Q FT  
Sbjct: 13  MGNCLHVLCHPPQEKIKVVIFKRGVREFKASTPIEEITSGPYIGYKLVH---HVQPFTPL 72

Query: 61  ---TSSAVAEVQHSPPPL--------PVRIDHSIVKPADKSKLPKATIVVSKQQLELILR 120
              T     EV H  P L        P +I H      +  K  K  IVV+++QLEL+L+
Sbjct: 73  PPNTKLEPGEVYHLVPNLASLGKPLVPSKIVHQ-----ESCKRQKIKIVVTREQLELLLK 132

Query: 121 KSKNFGS-KGIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 138
            +  F S K I VQ S R  + +G P+W P+L  IPEV ++
Sbjct: 133 TANKFRSPKEIGVQLSGRSGL-EGPPKWRPSLAIIPEVHSF 164

[Close]

BLAST of MELO3C008013.2 vs. NCBI nr
Match: ONI09721.1 (hypothetical protein PRUPE_4G005300 [Prunus persica])

HSP 1 Score: 58.9 bits (141), Expect = 1.5e-05
Identity = 52/161 (32.30%), Postives = 72/161 (44.72%), Query Frame = 0


Query: 1   MGNCINTHHFPPLQKIKGFI----------CCEVEGLDLGLPIG-----NVAAYGDCKSQ 60
           MGNC++    PP +KIK  I             +E +  G  IG     +V  Y      
Sbjct: 1   MGNCLHVLCHPPREKIKVVIFKGGVLEFKASTPIEEITSGPYIGYKLVHHVRPYTPLPP- 60

Query: 61  AFTTSSAVAEVQHSPPPL--------PVRIDHSIVKPADKSKLPKATIVVSKQQLELILR 120
              T     EV H  P L        P +I H      +  K  K  IVV+++QLEL+L+
Sbjct: 61  --NTKLEQGEVYHLVPNLASLGKPLVPSKIVHQ-----ESCKRQKIKIVVTREQLELLLK 120

Query: 121 KSKNFGS-KGIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 138
            +  F S K I VQ S R  + +G P+W P+L  IPEV ++
Sbjct: 121 SANKFRSPKEIGVQLSGRSGL-EGSPKWRPSLAIIPEVHSF 152

[Close]

BLAST of MELO3C008013.2 vs. TrEMBL
Match: tr|A0A0A0KHP3|A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.3e-61
Identity = 121/139 (87.05%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 1   MGNCINTHHFPPLQKIKGFICCEVEGLDLGLPIGNVAAYGDCKSQAFTTSSAV--AEVQH 60
           MGNCINT HFPPLQKIKGFICCEVE L+L LPI N+AA   CK+QAFTTSSAV  AEV+H
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAA---CKNQAFTTSSAVAEAEVEH 60

Query: 61  SPPPLPVRIDHSIVKPADKSKLPKATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFKVD 120
            PPPLPVRIDHSIVKPAD  KLPK TIVVSKQQLELILRKSKNFGSKGIAVQFSD FKVD
Sbjct: 61  GPPPLPVRIDHSIVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVD 120

Query: 121 DGCPRWHPALPTIPEVRNY 138
           DGCPRWHPALPTIPEVRNY
Sbjct: 121 DGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of MELO3C008013.2 vs. TrEMBL
Match: tr|B9HD50|B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200v3 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 82  KATIVVSKQQLELILRKSKNFGSKGIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 138
           K  IVV++QQLEL+LR SK F SKGIAV+FS+ FK  +G  +W P+L TIPEV+ +
Sbjct: 97  KVKIVVTRQQLELLLRNSKQFRSKGIAVRFSESFK--EGERKWRPSLVTIPEVQKF 150

[Close]

BLAST of MELO3C008013.2 vs. TrEMBL
Match: tr|A0A251PDS0|A0A251PDS0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-05
Identity = 52/161 (32.30%), Postives = 72/161 (44.72%), Query Frame = 0


Query: 1   MGNCINTHHFPPLQKIKGFI----------CCEVEGLDLGLPIG-----NVAAYGDCKSQ 60
           MGNC++    PP +KIK  I             +E +  G  IG     +V  Y      
Sbjct: 1   MGNCLHVLCHPPREKIKVVIFKGGVLEFKASTPIEEITSGPYIGYKLVHHVRPYTPLPP- 60

Query: 61  AFTTSSAVAEVQHSPPPL--------PVRIDHSIVKPADKSKLPKATIVVSKQQLELILR 120
              T     EV H  P L        P +I H      +  K  K  IVV+++QLEL+L+
Sbjct: 61  --NTKLEQGEVYHLVPNLASLGKPLVPSKIVHQ-----ESCKRQKIKIVVTREQLELLLK 120

Query: 121 KSKNFGS-KGIAVQFSDRFKVDDGCPRWHPALPTIPEVRNY 138
            +  F S K I VQ S R  + +G P+W P+L  IPEV ++
Sbjct: 121 SANKFRSPKEIGVQLSGRSGL-EGSPKWRPSLAIIPEVHSF 152

[Close]

BLAST of MELO3C008013.2 vs. TrEMBL
Match: tr|A0A218XDL5|A0A218XDL5_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012786 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.6e-05
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 58  HSPPPLPVRIDHSIVKPAD--KSKLPKATIVVSKQQLELILRKSKNFGSKG-IAVQFSDR 117
           +SPPPL    DH++ +P +  K       IVV+K+QLE +LR  K+    G IAV+  ++
Sbjct: 44  YSPPPL----DHAL-EPGEMFKGNSHFVKIVVTKRQLESMLRDGKDIPHIGDIAVRLLEK 103

Query: 118 FKVDDGCPRWHPALPTIPEVRNY 138
             V++ CP+W P+L TIPEV+ +
Sbjct: 104 PWVEEECPKWRPSLVTIPEVQKF 121

[Close]

BLAST of MELO3C008013.2 vs. TrEMBL
Match: tr|A0A2I0KZU8|A0A2I0KZU8_PUNGR (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005598 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.6e-05
Identity = 34/83 (40.96%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 58  HSPPPLPVRIDHSIVKPAD--KSKLPKATIVVSKQQLELILRKSKNFGSKG-IAVQFSDR 117
           +SPPPL    DH++ +P +  K       IVV+K+QLE +LR  K+    G IAV+  ++
Sbjct: 54  YSPPPL----DHAL-EPGEMFKGNSHFVKIVVTKRQLESMLRDGKDIPHIGDIAVRLLEK 113

Query: 118 FKVDDGCPRWHPALPTIPEVRNY 138
             V++ CP+W P+L TIPEV+ +
Sbjct: 114 PWVEEECPKWRPSLVTIPEVQKF 131

The following BLAST results are available for this feature:

BLAST of MELO3C008013.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49038.1	2.0e-61	87.05	hypothetical protein Csa_6G511050 [Cucumis sativus]	[more]
PNT29232.1	5.6e-08	58.93	hypothetical protein POPTR_006G018200v3 [Populus trichocarpa]	[more]
PQP96268.1	6.9e-06	32.92	hypothetical protein Pyn_29074 [Prunus yedoensis var. nudiflora]	[more]
PQQ11255.1	9.0e-06	32.92	hypothetical protein Pyn_06292 [Prunus yedoensis var. nudiflora]	[more]
ONI09721.1	1.5e-05	32.30	hypothetical protein PRUPE_4G005300 [Prunus persica]	[more]

BLAST of MELO3C008013.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C008013.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C008013.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHP3\|A0A0A0KHP3_CUCSA	1.3e-61	87.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511050 PE=4 SV=1	[more]
tr\|B9HD50\|B9HD50_POPTR	3.7e-08	58.93	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G018200v3 PE=...	[more]
tr\|A0A251PDS0\|A0A251PDS0_PRUPE	1.0e-05	32.30	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G005300 PE=4 SV=1	[more]
tr\|A0A218XDL5\|A0A218XDL5_PUNGR	8.6e-05	40.96	Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr012786 PE=4 SV=1	[more]
tr\|A0A2I0KZU8\|A0A2I0KZU8_PUNGR	8.6e-05	40.96	Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_005598 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C008013.2.1	MELO3C008013.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C008013.2	Csa6G511050	Cucumber (Chinese Long) v2	cumedB483
MELO3C008013.2	CSPI06G32840	Wild cucumber (PI 183967)	cpimedB493
MELO3C008013.2	CmaCh03G005880	Cucurbita maxima (Rimu)	cmamedB703
MELO3C008013.2	CmaCh07G003580	Cucurbita maxima (Rimu)	cmamedB907
MELO3C008013.2	CmoCh07G003500	Cucurbita moschata (Rifu)	cmomedB896
MELO3C008013.2	CmoCh03G006140	Cucurbita moschata (Rifu)	cmomedB694
MELO3C008013.2	Lsi01G004960	Bottle gourd (USVL1VR-Ls)	lsimedB163
MELO3C008013.2	Cp4.1LG19g08090	Cucurbita pepo (Zucchini)	cpemedB531
MELO3C008013.2	Cp4.1LG10g09980	Cucurbita pepo (Zucchini)	cpemedB080
MELO3C008013.2	Cla014390	Watermelon (97103) v1	medwmB559
MELO3C008013.2	ClCG01G021280	Watermelon (Charleston Gray)	medwcgB509
MELO3C008013.2	Cla97C01G020850	Watermelon (97103) v2	medwmbB505
MELO3C008013.2	Bhi03G000516	Wax gourd	medwgoB658
MELO3C008013.2	CsaV3_6G048300	Cucumber (Chinese Long) v3	cucmedB505

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None