Cp4.1LG19g08090 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG19g08090
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG19 : 6659490 .. 6659891 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAATTGCATCAGCTCACCCCGTCTCCCGCCGTTCCAACGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGTGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGCTCGGTGCTAGAAGTTGGGCGCGGGGCTGCTACGCCTCCCGCTCACGTTCTTATTGATAATGACGACGATATTACCAAGCCTGCAACTTTGTGCAAACTTCCCAACGCCACCATTGTTGTTAGCAAAGAACAACTCGAGTTTCTTTTGACAAACTCGGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATAGTTTTAAGTTTGACCGATCGTGCTCTAGATGGTGTCCCGCCTTGCCCACCATTCTCGAAGTTCATAATTACTAA

mRNA sequence

ATGGGAAATTGCATCAGCTCACCCCGTCTCCCGCCGTTCCAACGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGTGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGCTCGGTGCTAGAAGTTGGGCGCGGGGCTGCTACGCCTCCCGCTCACGTTCTTATTGATAATGACGACGATATTACCAAGCCTGCAACTTTGTGCAAACTTCCCAACGCCACCATTGTTGTTAGCAAAGAACAACTCGAGTTTCTTTTGACAAACTCGGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATAGTTTTAAGTTTGACCGATCGTGCTCTAGATGGTGTCCCGCCTTGCCCACCATTCTCGAAGTTCATAATTACTAA

Coding sequence (CDS)

ATGGGAAATTGCATCAGCTCACCCCGTCTCCCGCCGTTCCAACGGATCAAGGATTTCATGTGTTTGCATGAAGAACTCTACGATTTGGCTGTGCCAGTTGAGAAGATCGCTGGCCTAAAGCTAACAAGCTCGGTGCTAGAAGTTGGGCGCGGGGCTGCTACGCCTCCCGCTCACGTTCTTATTGATAATGACGACGATATTACCAAGCCTGCAACTTTGTGCAAACTTCCCAACGCCACCATTGTTGTTAGCAAAGAACAACTCGAGTTTCTTTTGACAAACTCGGAACAGTTTGGCTCTCAAGGCATTGCTGTTCAATTCTCTGATAGTTTTAAGTTTGACCGATCGTGCTCTAGATGGTGTCCCGCCTTGCCCACCATTCTCGAAGTTCATAATTACTAA

Protein sequence

MGNCISSPRLPPFQRIKDFMCLHEELYDLAVPVEKIAGLKLTSSVLEVGRGAATPPAHVLIDNDDDITKPATLCKLPNATIVVSKEQLEFLLTNSEQFGSQGIAVQFSDSFKFDRSCSRWCPALPTILEVHNY

Homology

[Close]

BLAST of Cp4.1LG19g08090 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.3e-31
Identity = 76/138 (55.07%), Postives = 90/138 (65.22%), Query Frame = 1


Query: 1   MGNCISSPRLPPFQRIKDFMCLHEELYDLAVPVEKIAGLK-----LTSSVLEVGRGAATP 60
           MGNCI++   PP Q+IK F+C   E  +LA+P+E IA  K      +S+V E       P
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PAHVLIDNDDDITKPATLCKLPNATIVVSKEQLEFLLTNSEQFGSQGIAVQFSDSFKFDR 120
           P  V ID+   I KPA LCKLP  TIVVSK+QLE +L  S+ FGS+GIAVQFSDSFK D 
Sbjct: 61  PLPVRIDHS--IVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDD 120

Query: 121 SCSRWCPALPTILEVHNY 134
            C RW PALPTI EV NY
Sbjct: 121 GCPRWHPALPTIPEVRNY 136

[Close]

BLAST of Cp4.1LG19g08090 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.8e-31
Identity = 76/138 (55.07%), Postives = 90/138 (65.22%), Query Frame = 1


Query: 1   MGNCISSPRLPPFQRIKDFMCLHEELYDLAVPVEKIAGLK-----LTSSVLEVGRGAATP 60
           MGNCI++   PP Q+IK F+C   E  +LA+P+E IA  K      +S+V E       P
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PAHVLIDNDDDITKPATLCKLPNATIVVSKEQLEFLLTNSEQFGSQGIAVQFSDSFKFDR 120
           P  V ID+   I KPA LCKLP  TIVVSK+QLE +L  S+ FGS+GIAVQFSDSFK D 
Sbjct: 61  PLPVRIDHS--IVKPADLCKLPKTTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKVDD 120

Query: 121 SCSRWCPALPTILEVHNY 134
            C RW PALPTI EV NY
Sbjct: 121 GCPRWHPALPTIPEVRNY 136

The following BLAST results are available for this feature:

BLAST of Cp4.1LG19g08090 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g08090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP3_CUCSA	1.3e-31	55.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1	[more]

BLAST of Cp4.1LG19g08090 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG19g08090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193834\|gb\|KGN49038.1\|	1.8e-31	55.07	hypothetical protein Csa_6G511050 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG19g08090.1	Cp4.1LG19g08090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG19g08090	CmaCh03G005880	Cucurbita maxima (Rimu)	cmacpeB671
Cp4.1LG19g08090	CmaCh07G003580	Cucurbita maxima (Rimu)	cmacpeB880
Cp4.1LG19g08090	CmoCh03G006140	Cucurbita moschata (Rifu)	cmocpeB624
Cp4.1LG19g08090	CmoCh07G003500	Cucurbita moschata (Rifu)	cmocpeB817
Cp4.1LG19g08090	Cla014390	Watermelon (97103) v1	cpewmB482
Cp4.1LG19g08090	Csa6G511050	Cucumber (Chinese Long) v2	cpecuB503
Cp4.1LG19g08090	MELO3C008013	Melon (DHL92) v3.5.1	cpemeB449
Cp4.1LG19g08090	ClCG01G021280	Watermelon (Charleston Gray)	cpewcgB425
Cp4.1LG19g08090	CSPI06G32840	Wild cucumber (PI 183967)	cpecpiB503
Cp4.1LG19g08090	Lsi01G004960	Bottle gourd (USVL1VR-Ls)	cpelsiB396
Cp4.1LG19g08090	MELO3C008013.2	Melon (DHL92) v3.6.1	cpemedB531
Cp4.1LG19g08090	CsaV3_6G048300	Cucumber (Chinese Long) v3	cpecucB0618
Cp4.1LG19g08090	Bhi03G000516	Wax gourd	cpewgoB0607

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG19g08090	Cp4.1LG10g09980	Cucurbita pepo (Zucchini)	cpecpeB076

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG19g08090	Cucumber (Gy14) v1	cgycpeB0039
Cp4.1LG19g08090	Cucumber (Gy14) v2	cgybcpeB810
Cp4.1LG19g08090	Silver-seed gourd	carcpeB0563
Cp4.1LG19g08090	Silver-seed gourd	carcpeB0915