Cp4.1LG10g09980 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g09980
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG10 : 4245689 .. 4246099 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAATTGCATCAACACAGCCCATTTCAGACCTCTGCAAAAGTTGAAAGATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAGCTTATACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGATGCATTGTGCAAACTCCCCAAGACCACCACCATTGTGGTTAGCAAACAGCAGCTTGAGTTGATCTTGAGAAACTCCAGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGTTCGACGATCGATGCTCCAGATGGTGCCCCGCCTTGCCTACAATTCTCGAGATTCATAATTACTAG

mRNA sequence

ATGGGGAATTGCATCAACACAGCCCATTTCAGACCTCTGCAAAAGTTGAAAGATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAGCTTATACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGATGCATTGTGCAAACTCCCCAAGACCACCACCATTGTGGTTAGCAAACAGCAGCTTGAGTTGATCTTGAGAAACTCCAGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGTTCGACGATCGATGCTCCAGATGGTGCCCCGCCTTGCCTACAATTCTCGAGATTCATAATTACTAG

Coding sequence (CDS)

ATGGGGAATTGCATCAACACAGCCCATTTCAGACCTCTGCAAAAGTTGAAAGATTTGATATGCTGTGAAGGAGAAGATTTAAGCTTGGCATTGCCCATTGAAAAGATAGCTTCTGGAGCTTATACAACTTCAAGTGCTGTGCTAGAAGTTGACCGTGGGGCTCCTCCTCCACTGCCTGTTCGTATTGATGATGATGATGATGCTGTTAGCAAGCCTGATGCATTGTGCAAACTCCCCAAGACCACCACCATTGTGGTTAGCAAACAGCAGCTTGAGTTGATCTTGAGAAACTCCAGAAAGTTTGCCTCTAAAGGTATTGCTGTTCAATTCTCTGATAGTTTTGAGTTCGACGATCGATGCTCCAGATGGTGCCCCGCCTTGCCTACAATTCTCGAGATTCATAATTACTAG

Protein sequence

MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIASGAYTTSSAVLEVDRGAPPPLPVRIDDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSDSFEFDDRCSRWCPALPTILEIHNY

Homology

[Close]

BLAST of Cp4.1LG10g09980 vs. TrEMBL
Match: A0A0A0KHP3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 97/140 (69.29%), Postives = 107/140 (76.43%), Query Frame = 1


Query: 1   MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIAS---GAYTTSSAVLEVD-RGAPP 60
           MGNCINT HF PLQK+K  ICCE EDL+LALPIE IA+    A+TTSSAV E +    PP
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PLPVRIDDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSDSFEF 120
           PLPVRID    ++ KP  LCKLPK TTIVVSKQQLELILR S+ F SKGIAVQFSDSF+ 
Sbjct: 61  PLPVRIDH---SIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKV 120

Query: 121 DDRCSRWCPALPTILEIHNY 137
           DD C RW PALPTI E+ NY
Sbjct: 121 DDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of Cp4.1LG10g09980 vs. TrEMBL
Match: B9HD50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 52/152 (34.21%), Postives = 77/152 (50.66%), Query Frame = 1


Query: 1   MGNCINTAHFRPLQKLKDLICCEGE-DLSLALPIEKIASGAYTTSSAVLEVDRGAPPPLP 60
           MGNCI+   +   ++ K LI   GE +   +  ++KI SG Y     V       P P  
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VRIDDDDDAVSKPDA--LCKLP-------------KTTTIVVSKQQLELILRNSRKFASK 120
            R++        P     C+L              +   IVV++QQLEL+LRNS++F SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEFDDRCSRWCPALPTILEIHNY 137
           GIAV+FS+SF+  +R  +W P+L TI E+  +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of Cp4.1LG10g09980 vs. TrEMBL
Match: A0A067KKV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.5e-07
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 1


Query: 1   MGNCINTAHFRPLQKLKDLICC-EGEDLSLALPIEKIASGAYTTSSAVLEVDRGAPPPLP 60
           MGNCI+     P +K   L+   E ++   +  ++KI SG Y     V      +P P  
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  VRIDDDDDAVSKPDALCKLPKTTT----------IVVSKQQLELILRNSRKFASKGIAVQ 120
            +++  +     P  +   PK+ +          IV+++QQL+ +LRN+++F SKG  V 
Sbjct: 61  TKLEAGELYYLVPPFV--KPKSASQETHRKQKVKIVLTRQQLQFLLRNAKEFKSKGFTVG 120

Query: 121 FSDSFEFDDRCSRWCPALPTILEI 134
           FS SF  ++R  +W P+L TI E+
Sbjct: 121 FSTSFREENR--KWQPSLATIQEV 140

[Close]

BLAST of Cp4.1LG10g09980 vs. NCBI nr
Match: gi|700193834|gb|KGN49038.1| (hypothetical protein Csa_6G511050 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-42
Identity = 97/140 (69.29%), Postives = 107/140 (76.43%), Query Frame = 1


Query: 1   MGNCINTAHFRPLQKLKDLICCEGEDLSLALPIEKIAS---GAYTTSSAVLEVD-RGAPP 60
           MGNCINT HF PLQK+K  ICCE EDL+LALPIE IA+    A+TTSSAV E +    PP
Sbjct: 1   MGNCINTLHFPPLQKIKGFICCEVEDLNLALPIENIAACKNQAFTTSSAVAEAEVEHGPP 60

Query: 61  PLPVRIDDDDDAVSKPDALCKLPKTTTIVVSKQQLELILRNSRKFASKGIAVQFSDSFEF 120
           PLPVRID    ++ KP  LCKLPK TTIVVSKQQLELILR S+ F SKGIAVQFSDSF+ 
Sbjct: 61  PLPVRIDH---SIVKPADLCKLPK-TTIVVSKQQLELILRKSKNFGSKGIAVQFSDSFKV 120

Query: 121 DDRCSRWCPALPTILEIHNY 137
           DD C RW PALPTI E+ NY
Sbjct: 121 DDGCPRWHPALPTIPEVRNY 136

[Close]

BLAST of Cp4.1LG10g09980 vs. NCBI nr
Match: gi|224089779|ref|XP_002308812.1| (hypothetical protein POPTR_0006s01910g [Populus trichocarpa])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 52/152 (34.21%), Postives = 77/152 (50.66%), Query Frame = 1


Query: 1   MGNCINTAHFRPLQKLKDLICCEGE-DLSLALPIEKIASGAYTTSSAVLEVDRGAPPPLP 60
           MGNCI+   +   ++ K LI   GE +   +  ++KI SG Y     V       P P  
Sbjct: 1   MGNCIDVLSYSSAERSKVLIHNGGEKEFKSSTRVKKITSGRYGGYMLVHSALPYVPLPPD 60

Query: 61  VRIDDDDDAVSKPDA--LCKLP-------------KTTTIVVSKQQLELILRNSRKFASK 120
            R++        P     C+L              +   IVV++QQLEL+LRNS++F SK
Sbjct: 61  TRLEPGVVYYLMPSLGQPCRLEVSSKLAGQETCASRKVKIVVTRQQLELLLRNSKQFRSK 120

Query: 121 GIAVQFSDSFEFDDRCSRWCPALPTILEIHNY 137
           GIAV+FS+SF+  +R  +W P+L TI E+  +
Sbjct: 121 GIAVRFSESFKEGER--KWRPSLVTIPEVQKF 150

[Close]

BLAST of Cp4.1LG10g09980 vs. NCBI nr
Match: gi|643723314|gb|KDP32905.1| (hypothetical protein JCGZ_13686 [Jatropha curcas])

HSP 1 Score: 62.0 bits (149), Expect = 9.3e-07
Identity = 44/144 (30.56%), Postives = 73/144 (50.69%), Query Frame = 1


Query: 1   MGNCINTAHFRPLQKLKDLICC-EGEDLSLALPIEKIASGAYTTSSAVLEVDRGAPPPLP 60
           MGNCI+     P +K   L+   E ++   +  ++KI SG Y     V      +P P  
Sbjct: 1   MGNCIDVLSQEPAEKSTVLVYNGEEKEFKASTQVKKIVSGGYRRYKIVHHALPFSPLPSN 60

Query: 61  VRIDDDDDAVSKPDALCKLPKTTT----------IVVSKQQLELILRNSRKFASKGIAVQ 120
            +++  +     P  +   PK+ +          IV+++QQL+ +LRN+++F SKG  V 
Sbjct: 61  TKLEAGELYYLVPPFV--KPKSASQETHRKQKVKIVLTRQQLQFLLRNAKEFKSKGFTVG 120

Query: 121 FSDSFEFDDRCSRWCPALPTILEI 134
           FS SF  ++R  +W P+L TI E+
Sbjct: 121 FSTSFREENR--KWQPSLATIQEV 140

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g09980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g09980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHP3_CUCSA	2.8e-42	69.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G511050 PE=4 SV=1	[more]
B9HD50_POPTR	1.1e-09	34.21	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s01910g PE=4 SV=1	[more]
A0A067KKV0_JATCU	6.5e-07	30.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13686 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g09980 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g09980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193834\|gb\|KGN49038.1\|	4.0e-42	69.29	hypothetical protein Csa_6G511050 [Cucumis sativus]	[more]
gi\|224089779\|ref\|XP_002308812.1\|	1.5e-09	34.21	hypothetical protein POPTR_0006s01910g [Populus trichocarpa]	[more]
gi\|643723314\|gb\|KDP32905.1\|	9.3e-07	30.56	hypothetical protein JCGZ_13686 [Jatropha curcas]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g09980.1	Cp4.1LG10g09980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g09980	CmaCh03G005880	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g09980	CmaCh07G003580	Cucurbita maxima (Rimu)	cmacpeB866
Cp4.1LG10g09980	CmoCh03G006140	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g09980	CmoCh07G003500	Cucurbita moschata (Rifu)	cmocpeB806
Cp4.1LG10g09980	Cla014390	Watermelon (97103) v1	cpewmB073
Cp4.1LG10g09980	Csa6G511050	Cucumber (Chinese Long) v2	cpecuB085
Cp4.1LG10g09980	MELO3C008013	Melon (DHL92) v3.5.1	cpemeB060
Cp4.1LG10g09980	ClCG01G021280	Watermelon (Charleston Gray)	cpewcgB061
Cp4.1LG10g09980	CSPI06G32840	Wild cucumber (PI 183967)	cpecpiB080
Cp4.1LG10g09980	Lsi01G004960	Bottle gourd (USVL1VR-Ls)	cpelsiB054
Cp4.1LG10g09980	MELO3C008013.2	Melon (DHL92) v3.6.1	cpemedB080
Cp4.1LG10g09980	Bhi03G000516	Wax gourd	cpewgoB0097

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g09980	Cp4.1LG19g08090	Cucurbita pepo (Zucchini)	cpecpeB076

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g09980	Cucurbita pepo (Zucchini)	cpecpeB089
Cp4.1LG10g09980	Cucumber (Gy14) v1	cgycpeB0033
Cp4.1LG10g09980	Cucurbita maxima (Rimu)	cmacpeB218
Cp4.1LG10g09980	Cucurbita maxima (Rimu)	cmacpeB419
Cp4.1LG10g09980	Wild cucumber (PI 183967)	cpecpiB051
Cp4.1LG10g09980	Cucumber (Chinese Long) v2	cpecuB056
Cp4.1LG10g09980	Cucumber (Gy14) v2	cgybcpeB024
Cp4.1LG10g09980	Cucumber (Gy14) v2	cgybcpeB710
Cp4.1LG10g09980	Silver-seed gourd	carcpeB0554
Cp4.1LG10g09980	Silver-seed gourd	carcpeB0913
Cp4.1LG10g09980	Cucumber (Chinese Long) v3	cpecucB0092