Csa6G338080 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G338080
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Protein MKS1, putative; contains IPR008889 (VQ)
Location	Chr6 : 15427318 .. 15427851 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAGTCTCCCCCAAGATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCGCCCATTTCCTCCACTATTTTCAATCCCCCACCACAGGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

mRNA sequence

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAGTCTCCCCCAAGATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCGCCCATTTCCTCCACTATTTTCAATCCCCCACCACAGGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

Coding sequence (CDS)

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAGTCTCCCCCAAGATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCGCCCATTTCCTCCACTATTTTCAATCCCCCACCACAGGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

Protein sequence

MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH*

Homology

[Close]

BLAST of Csa6G338080 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-18
Identity = 59/154 (38.31%), Postives = 77/154 (50.00%), Query Frame = 1


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKP---PLPPPQ--------PHRPVIIYTVSPKIIH 62
           +K++LQ+ GPRPS L + KDSHKIKKP   P PPP         P  PV+IY VSPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TDPTEFKDLVQRLTGHHQPPSSSSNHA--------LVHDHHPPPDHISIPTT-DDPIDDQ 122
              +EF ++VQRLTG        S           L    +  P     P   D+ ++  
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 AGVDRI-----IAHGILSPTPGLLPPISSTIFNP 132
             ++        A GILSP+P LLP  S+ IF+P
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALLPTASTGIFSP 171

[Close]

BLAST of Csa6G338080 vs. Swiss-Prot
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.3e-13
Identity = 50/125 (40.00%), Postives = 61/125 (48.80%), Query Frame = 1


Query: 11  GPRPSALKITKDSHKI-KKPPLPPPQPHR------------------PVIIYTVSPKIIH 70
           GP+P+ LK+  DSHKI KKPPL PP P                    PV IYTV+P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TDPTEFKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAH 117
           T P  F  LVQRLTG     ++SS+              S  +T +P D    VD   +H
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSS--------------SSSSTSEPKDTSTMVD--TSH 121

[Close]

BLAST of Csa6G338080 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.6e-11
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 12  PRPSALKITKDSHKIKKPPLPPP-----QPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTG 67
           P P  LK+ KDSH IKKPP P       +P  PVIIYT +P+IIHT+P +F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Csa6G338080 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-10
Identity = 48/136 (35.29%), Postives = 63/136 (46.32%), Query Frame = 1


Query: 8   QLQGPRPSALKITKDSHKIKKPPL--PPPQPH---RPVIIYTVSPKIIHTDPTEFKDLVQ 67
           ++ G RPS+LK+  +SH IKK       P+PH    PVIIY  SPK+IHT   +F  LVQ
Sbjct: 8   EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

Query: 68  RLTG----HHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTP 127
           RLTG      +  S SS+  +  + +   D+ + P + D    Q   D            
Sbjct: 68  RLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDM----------- 127

Query: 128 GLLPPISSTIFNPPPQ 135
            L  P S T+F  P Q
Sbjct: 128 PLFTPSSMTLFGSPTQ 132

[Close]

BLAST of Csa6G338080 vs. TrEMBL
Match: A0A0A0KI80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 1.3e-100
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120
           VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 178
           LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Csa6G338080 vs. TrEMBL
Match: A0A151TGT1_CAJCA (Protein MKS1 OS=Cajanus cajan GN=KK1_012548 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.8e-26
Identity = 79/195 (40.51%), Postives = 101/195 (51.79%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPP------PQPHRPVIIYTVSPKIIHTDPTEF 63
           ++ELQLQGPRP+ L+I KDSHKIKKPPLPP      P P +P+IIYTVSPK+IHT P +F
Sbjct: 15  RRELQLQGPRPTPLRINKDSHKIKKPPLPPQASHPQPPPRQPIIIYTVSPKVIHTTPGDF 74

Query: 64  KDLVQRLTGHHQPPSSSSNHALVHDH---------HPPPDHISIPTTDDPIDDQAGV--- 123
            +LVQRLTG     SSSS++   +++          P   + +I     P+  +  V   
Sbjct: 75  MNLVQRLTGSSSSSSSSSSNLEANNNDPFNAGGVVSPAARYATIEKAMSPMGKKQLVNIP 134

Query: 124 ------------DRIIAH-----------GILSPTPGLLPPISSTIFNPPPQAPAAAAAG 158
                       D I+ H           GILSP P  L PI S  F+PP   P      
Sbjct: 135 SGGANSNSNIISDEIMGHAVVERSQNMFQGILSPGPASLSPIPSNFFSPPSSDP------ 194

[Close]

BLAST of Csa6G338080 vs. TrEMBL
Match: A0A151R6L2_CAJCA (Protein MKS1 OS=Cajanus cajan GN=KK1_040566 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.2e-26
Identity = 79/187 (42.25%), Postives = 98/187 (52.41%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPPPQ------PHRPVIIYTVSPKIIHTDPTEF 63
           K+ELQLQGPRP+ L+I KDSHKIKKPP+ PP       P  PVIIYTVSPK+IHT P++F
Sbjct: 14  KRELQLQGPRPTPLRINKDSHKIKKPPVAPPPAQPQAPPRLPVIIYTVSPKVIHTTPSDF 73

Query: 64  KDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTT---------------------D 123
             LVQRLTG     SSSS+   V       D   IP +                      
Sbjct: 74  MSLVQRLTGSSSSSSSSSSSDKVATDPLTGDKGHIPVSPAARYAAIEMARTTQSIKHNPS 133

Query: 124 DPIDDQAGVDRI------IAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQF 158
           +   D  GV+ +      + HGILSP P  L PI S  F+PP        + D  ++  F
Sbjct: 134 ENSGDVGGVEIVGHERPNMFHGILSPGPASLSPIPSNFFSPP--------SNDPNNMVSF 192

[Close]

BLAST of Csa6G338080 vs. TrEMBL
Match: M5VJC3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026048mg PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.0e-25
Identity = 88/224 (39.29%), Postives = 116/224 (51.79%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPPP--------------QPHRPVIIYTVSPKI 63
           ++ELQLQGPRP+ L++ KDSHKIKKPP+ P               QP +PVIIYTVSPK+
Sbjct: 10  RRELQLQGPRPTPLRVHKDSHKIKKPPIVPQPSSQPPSQQPHLYQQPRQPVIIYTVSPKV 69

Query: 64  IHTDPTEFKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISI---PTTDDPI------- 123
           IHT+P+EF DLVQRLTG +   SSSS+    ++ + PP++ +     + DD +       
Sbjct: 70  IHTNPSEFMDLVQRLTGLNS--SSSSSPPTQNNPNNPPNYDNSNNNNSRDDQVMKTSSAQ 129

Query: 124 ---------DDQAGV-DRIIAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQ 176
                     D+ GV  + +  GILSP P  L PI S  F+PP  +              
Sbjct: 130 DVAQGMEMDGDEGGVRQKGLFPGILSPGPASLNPIPSNFFSPPSDS-------------- 189

[Close]

BLAST of Csa6G338080 vs. TrEMBL
Match: A0A061FH83_THECC (VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_035487 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.2e-22
Identity = 78/186 (41.94%), Postives = 96/186 (51.61%), Query Frame = 1


Query: 8   QLQGPRPSALKITKDSHKIKKPPL-------PPPQPHRPVIIYTVSPKIIHTDPTEFKDL 67
           +LQGPRP+ LK+ KDS+KIKKPPL       PP Q   PVIIYTVSPK+IHT+P++F DL
Sbjct: 15  ELQGPRPAPLKVRKDSYKIKKPPLAPQPVQQPPAQIRPPVIIYTVSPKVIHTNPSDFMDL 74

Query: 68  VQRLTGHHQP-------PSSSSNHALVHDHH----PPPDHISIPTTDDP----------- 127
           VQRLTG           PSS+S+H   HD      P     +I  T  P           
Sbjct: 75  VQRLTGSTSASSGSSSLPSSTSSHPF-HDTRAAISPAARFATIEKTKSPEGKKQQISEEN 134

Query: 128 ------IDDQAGVDRI-IAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFF 158
                 ++   GV+R     GILSP P  LPPIS   F+PP             + + FF
Sbjct: 135 FGFVQGVEMNHGVERTSFFPGILSPGPTSLPPISPNFFSPPFD----------PNSSNFF 189

[Close]

BLAST of Csa6G338080 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 92.0 bits (227), Expect = 3.9e-19
Identity = 59/154 (38.31%), Postives = 77/154 (50.00%), Query Frame = 1


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKP---PLPPPQ--------PHRPVIIYTVSPKIIH 62
           +K++LQ+ GPRPS L + KDSHKIKKP   P PPP         P  PV+IY VSPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TDPTEFKDLVQRLTGHHQPPSSSSNHA--------LVHDHHPPPDHISIPTT-DDPIDDQ 122
              +EF ++VQRLTG        S           L    +  P     P   D+ ++  
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 AGVDRI-----IAHGILSPTPGLLPPISSTIFNP 132
             ++        A GILSP+P LLP  S+ IF+P
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALLPTASTGIFSP 171

[Close]

BLAST of Csa6G338080 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-15
Identity = 52/125 (41.60%), Postives = 61/125 (48.80%), Query Frame = 1


Query: 11  GPRPSALKITKDSHKI-KKPPLPPPQPHR------------------PVIIYTVSPKIIH 70
           GPRP  LK+  DSHKI KKPPL PP P                    PVIIYTVSP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 71  TDPTEFKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAH 117
           T P  F  LVQRLTG     ++SS+++               +T  P D    VD   +H
Sbjct: 73  THPNNFMTLVQRLTGKTSTSTTSSSYS--------------SSTSAPKDASTMVD--TSH 121

[Close]

BLAST of Csa6G338080 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-14
Identity = 50/125 (40.00%), Postives = 61/125 (48.80%), Query Frame = 1


Query: 11  GPRPSALKITKDSHKI-KKPPLPPPQPHR------------------PVIIYTVSPKIIH 70
           GP+P+ LK+  DSHKI KKPPL PP P                    PV IYTV+P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TDPTEFKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAH 117
           T P  F  LVQRLTG     ++SS+              S  +T +P D    VD   +H
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSS--------------SSSSTSEPKDTSTMVD--TSH 121

[Close]

BLAST of Csa6G338080 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 34/60 (56.67%), Postives = 39/60 (65.00%), Query Frame = 1


Query: 12  PRPSALKITKDSHKIKKPPLPPP-----QPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTG 67
           P P  LK+ KDSH IKKPP P       +P  PVIIYT +P+IIHT+P +F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Csa6G338080 vs. TAIR10
Match: AT1G68450.1 (AT1G68450.1 VQ motif-containing protein)

HSP 1 Score: 66.2 bits (160), Expect = 2.3e-11
Identity = 48/136 (35.29%), Postives = 63/136 (46.32%), Query Frame = 1


Query: 8   QLQGPRPSALKITKDSHKIKKPPL--PPPQPH---RPVIIYTVSPKIIHTDPTEFKDLVQ 67
           ++ G RPS+LK+  +SH IKK       P+PH    PVIIY  SPK+IHT   +F  LVQ
Sbjct: 8   EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

Query: 68  RLTG----HHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTP 127
           RLTG      +  S SS+  +  + +   D+ + P + D    Q   D            
Sbjct: 68  RLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDM----------- 127

Query: 128 GLLPPISSTIFNPPPQ 135
            L  P S T+F  P Q
Sbjct: 128 PLFTPSSMTLFGSPTQ 132

[Close]

BLAST of Csa6G338080 vs. NCBI nr
Match: gi|449462192|ref|XP_004148825.1| (PREDICTED: protein MKS1-like [Cucumis sativus])

HSP 1 Score: 373.6 bits (958), Expect = 1.9e-100
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120
           VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 178
           LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Csa6G338080 vs. NCBI nr
Match: gi|659082070|ref|XP_008441652.1| (PREDICTED: protein MKS1-like, partial [Cucumis melo])

HSP 1 Score: 315.5 bits (807), Expect = 6.1e-83
Identity = 157/176 (89.20%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDLVQ 62
           +K++LQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPT+FKDLVQ
Sbjct: 4   KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 63

Query: 63  RLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQA-GVDRIIAHGILSPTPGLL 122
           RLTGHHQPPSSSSNHALVHD HPPPD ISIP T D IDDQA GVDRIIAHGILSPTPGLL
Sbjct: 64  RLTGHHQPPSSSSNHALVHD-HPPPDPISIPIT-DAIDDQAGGVDRIIAHGILSPTPGLL 123

Query: 123 PPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 178
           PPIS TIF+ PP   AAAA GDLTSLTQFFHDLSPI ANHFS SLDFFQQNFPDFH
Sbjct: 124 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177

[Close]

BLAST of Csa6G338080 vs. NCBI nr
Match: gi|658027252|ref|XP_008349061.1| (PREDICTED: protein MKS1-like [Malus domestica])

HSP 1 Score: 132.1 bits (331), Expect = 9.5e-28
Identity = 91/223 (40.81%), Postives = 116/223 (52.02%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPPP---------------QPHRPVIIYTVSPK 63
           ++ELQLQGPRP+ L+I KDSHKIKKPP+ P                QP +PVIIYTVSPK
Sbjct: 10  RRELQLQGPRPTPLRIHKDSHKIKKPPVVPQPSQQPNQQQQPHHYQQPRQPVIIYTVSPK 69

Query: 64  IIHTDPTEFKDLVQRLTG---------HHQPPSSSSNHALVHD-HHPPPDH-----ISIP 123
           +IHT+P+EF DLVQRLTG            PPS+++ + L HD ++ PP H         
Sbjct: 70  VIHTNPSEFMDLVQRLTGLRRSNSSTTSSSPPSNNNINPLNHDNYNNPPAHDDQGMKKSS 129

Query: 124 TTDDPID-----DQAGVDRIIAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLT 175
           T  D ++     D  GV + +  GILSP P  L PI S  F+PP  +             
Sbjct: 130 TAQDVVEEMEIMDDGGVKKGLFPGILSPGPASLTPIPSNFFSPPADS------------- 189

[Close]

BLAST of Csa6G338080 vs. NCBI nr
Match: gi|694449728|ref|XP_009350442.1| (PREDICTED: protein MKS1-like [Pyrus x bretschneideri])

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 91/223 (40.81%), Postives = 116/223 (52.02%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPPP---------------QPHRPVIIYTVSPK 63
           ++ELQLQGPRP+ L+I KDSHKIKKPP+ P                QP +PVIIYTVSPK
Sbjct: 10  RRELQLQGPRPTPLRIHKDSHKIKKPPVVPQPSQQPNQQQQPHHYQQPRQPVIIYTVSPK 69

Query: 64  IIHTDPTEFKDLVQRLTG---------HHQPPSSSSNHALVHD-HHPPPDH-----ISIP 123
           +IHT+P+EF DLVQRLTG            PPS+++ + L HD ++ PP H         
Sbjct: 70  VIHTNPSEFMDLVQRLTGLPRSNSSTTSSSPPSNNNINPLNHDNYNNPPAHDDQGMKKNS 129

Query: 124 TTDDPID-----DQAGVDRIIAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLT 175
           T  D ++     D  GV + +  GILSP P  L PI S  F+PP  +             
Sbjct: 130 TAQDVVEEMEIMDDGGVKKGLFPGILSPGPASLTPIPSNFFSPPADS------------- 189

[Close]

BLAST of Csa6G338080 vs. NCBI nr
Match: gi|470108489|ref|XP_004290549.1| (PREDICTED: protein MKS1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 127.5 bits (319), Expect = 2.4e-26
Identity = 85/187 (45.45%), Postives = 103/187 (55.08%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPPP-----QPHRP----VIIYTVSPKIIHTDP 63
           +KELQLQGPRP+ LKI KDSHKIKKPP+ P      QPH+P    VIIYTVSPKIIHT+P
Sbjct: 13  RKELQLQGPRPAPLKIHKDSHKIKKPPVVPQPSQANQPHQPPRQPVIIYTVSPKIIHTNP 72

Query: 64  TEFKDLVQRLTGHHQPPSSS----SNHALVHDHH--------------PPPDHISIPTTD 123
           ++F +LVQRLTG   PPS+S    S+ +  +DH                  DH      D
Sbjct: 73  SDFMNLVQRLTG--LPPSNSSASCSSSSPRNDHQNTNGGGGESTMEQSRSSDHEGTMDMD 132

Query: 124 DPIDDQAG------VDRIIAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQF 158
           D  DD+          + +  GILSP PG LPPI S  F+PP  +              F
Sbjct: 133 DDHDDRVHDTGLKLQQKGMFPGILSPAPGSLPPIPSNFFSPPADS--------------F 183

The following BLAST results are available for this feature:

BLAST of Csa6G338080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MKS1_ARATH	6.9e-18	38.31	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]
NSRB_ARATH	2.3e-13	40.00	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1	[more]
VQ20_ARATH	3.6e-11	56.67	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]
VQ8_ARATH	4.0e-10	35.29	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2...	[more]

BLAST of Csa6G338080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI80_CUCSA	1.3e-100	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1	[more]
A0A151TGT1_CAJCA	4.8e-26	40.51	Protein MKS1 OS=Cajanus cajan GN=KK1_012548 PE=4 SV=1	[more]
A0A151R6L2_CAJCA	6.2e-26	42.25	Protein MKS1 OS=Cajanus cajan GN=KK1_040566 PE=4 SV=1	[more]
M5VJC3_PRUPE	4.0e-25	39.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026048mg PE=4 SV=1	[more]
A0A061FH83_THECC	3.2e-22	41.94	VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_035487 PE=4 SV=1	[more]

BLAST of Csa6G338080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18690.1	3.9e-19	38.31	MAP kinase substrate 1	[more]
AT1G21326.1	3.4e-15	41.60	VQ motif-containing protein	[more]
AT1G21320.1	1.3e-14	40.00	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	2.1e-12	56.67	VQ motif-containing protein	[more]
AT1G68450.1	2.3e-11	35.29	VQ motif-containing protein	[more]

BLAST of Csa6G338080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462192\|ref\|XP_004148825.1\|	1.9e-100	100.00	PREDICTED: protein MKS1-like [Cucumis sativus]	[more]
gi\|659082070\|ref\|XP_008441652.1\|	6.1e-83	89.20	PREDICTED: protein MKS1-like, partial [Cucumis melo]	[more]
gi\|658027252\|ref\|XP_008349061.1\|	9.5e-28	40.81	PREDICTED: protein MKS1-like [Malus domestica]	[more]
gi\|694449728\|ref\|XP_009350442.1\|	1.2e-27	40.81	PREDICTED: protein MKS1-like [Pyrus x bretschneideri]	[more]
gi\|470108489\|ref\|XP_004290549.1\|	2.4e-26	45.45	PREDICTED: protein MKS1 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G338080.1	Csa6G338080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 45..71 score: 9.4
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 2..66 score: 6.0
None	No IPR available	PANTHER	PTHR33143:SF5	SUBFAMILY NOT NAMED	coord: 2..66 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G338080	Cla013849	Watermelon (97103) v1	cuwmB468
Csa6G338080	MELO3C008398	Melon (DHL92) v3.5.1	cumeB468
Csa6G338080	ClCG08G006550	Watermelon (Charleston Gray)	cuwcgB507
Csa6G338080	Lsi08G005310	Bottle gourd (USVL1VR-Ls)	culsiB481
Csa6G338080	MELO3C008398.2	Melon (DHL92) v3.6.1	cumedB450
Csa6G338080	Cla97C08G149360	Watermelon (97103) v2	cuwmbB498
Csa6G338080	Bhi04G001408	Wax gourd	cuwgoB573
Csa6G338080	CSPI06G18010	Wild cucumber (PI 183967)	cpicuB313
Csa6G338080	Cucsa.077000	Cucumber (Gy14) v1	cgycuB074
Csa6G338080	CmaCh04G024300	Cucurbita maxima (Rimu)	cmacuB771
Csa6G338080	CmaCh15G006170	Cucurbita maxima (Rimu)	cmacuB311
Csa6G338080	CmoCh15G006210	Cucurbita moschata (Rifu)	cmocuB299
Csa6G338080	CmoCh04G025470	Cucurbita moschata (Rifu)	cmocuB762
Csa6G338080	Cp4.1LG01g21070	Cucurbita pepo (Zucchini)	cpecuB463
Csa6G338080	Cp4.1LG13g04200	Cucurbita pepo (Zucchini)	cpecuB200
Csa6G338080	CsGy6G017490	Cucumber (Gy14) v2	cgybcuB281
Csa6G338080	Carg15779	Silver-seed gourd	carcuB0067
Csa6G338080	Carg01590	Silver-seed gourd	carcuB0852

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G338080	Cucurbita moschata (Rifu)	cmocuB026
Csa6G338080	Cucurbita pepo (Zucchini)	cpecuB795