CmaCh04G024300 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G024300
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	VQ motif-containing family protein
Location	Cma_Chr04 : 16752025 .. 16752513 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCAAAAAGCTGCCGCAGCTCCCCCCACCACCACCGCACCACCGCCCTGTCATAATCTACACCGACTCCCCCAAGATAATCCACACCAATCCTACCCAATTCAAGGAATTGGTCCAACGTCTCACTAGCTGCCAATCTAATAGTCCTGATACTCATCCGGTCCAATCCAAGACAATATCAATATCTATGTCGATGCAAACGAGTAGTACCGAACAAGGAATGGAGAGTGTAGGTCGTTTCCCAACCGGGATATTACCGCCGATGCCGGAGTTTCTACTGCCCGTCATGCCGACGCAGCCGTCGGCGTCAACTGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGACAACTTCCCTGATTTTCATTAA

mRNA sequence

ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCAAAAAGCTGCCGCAGCTCCCCCCACCACCACCGCACCACCGCCCTGTCATAATCTACACCGACTCCCCCAAGATAATCCACACCAATCCTACCCAATTCAAGGAATTGGTCCAACGTCTCACTAGCTGCCAATCTAATAGTCCTGATACTCATCCGGTCCAATCCAAGACAATATCAATATCTATGTCGATGCAAACGAGTAGTACCGAACAAGGAATGGAGAGTGTAGGTCGTTTCCCAACCGGGATATTACCGCCGATGCCGGAGTTTCTACTGCCCGTCATGCCGACGCAGCCGTCGGCGTCAACTGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGACAACTTCCCTGATTTTCATTAA

Coding sequence (CDS)

ATGGCTGAAAGAAAACACCTTCAACTCCATGGCCACCGCCCCTCCGCCCTCAAAATCTCCAAACACTCCCACAATATCAAAAAGCTGCCGCAGCTCCCCCCACCACCACCGCACCACCGCCCTGTCATAATCTACACCGACTCCCCCAAGATAATCCACACCAATCCTACCCAATTCAAGGAATTGGTCCAACGTCTCACTAGCTGCCAATCTAATAGTCCTGATACTCATCCGGTCCAATCCAAGACAATATCAATATCTATGTCGATGCAAACGAGTAGTACCGAACAAGGAATGGAGAGTGTAGGTCGTTTCCCAACCGGGATATTACCGCCGATGCCGGAGTTTCTACTGCCCGTCATGCCGACGCAGCCGTCGGCGTCAACTGATCTCAGCTCTCTCACCCACTACTTCCAAGACAGCTCCATAGCTCCTAATAATTTTGCATCGTCGCTAGATTTCTTCGACAACTTCCCTGATTTTCATTAA

Protein sequence

MAERKHLQLHGHRPSALKISKHSHNIKKLPQLPPPPPHHRPVIIYTDSPKIIHTNPTQFKELVQRLTSCQSNSPDTHPVQSKTISISMSMQTSSTEQGMESVGRFPTGILPPMPEFLLPVMPTQPSASTDLSSLTHYFQDSSIAPNNFASSLDFFDNFPDFH

Homology

[Close]

BLAST of CmaCh04G024300 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 62.4 bits (150), Expect = 5.3e-09
Identity = 52/172 (30.23%), Postives = 77/172 (44.77%), Query Frame = 1


Query: 3   ERKHLQLHGHRPSALKISKHSHNIKKLPQLPPPPPH---------HRPVIIYTDSPKIIH 62
           +++ LQ+ G RPS L + K SH IKK P+ P PPP+           PV+IY  SPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TNPTQFKELVQRLTSCQSN-----------SPDTHPVQSKTISISMSMQTSSTEQGME-- 122
              ++F  +VQRLT   S            SP      ++  S     + ++ ++ +E  
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 -------SVGRFPTGILPPMPEFLLPVMPTQPSASTDLSSLTHYFQDSSIAP 146
                    G +  GIL P P  L       P+AST + S   Y Q    +P
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALL-------PTASTGIFS-PMYHQGGMFSP 181

[Close]

BLAST of CmaCh04G024300 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-07
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 8  QLHGHRPSALKISKHSHNIKKLPQLPPPP-PHHR--PVIIYTDSPKIIHTNPTQFKELVQ 67
          +++G RPS+LK++  SH IKK       P PH R  PVIIY  SPK+IHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of CmaCh04G024300 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-06
Identity = 41/105 (39.05%), Postives = 52/105 (49.52%), Query Frame = 1


Query: 14  PSALKISKHSHNIKKLPQLPPPP--------PHHRPVIIYTDSPKIIHTNPTQFKELVQR 73
           P  LK++K SH IKK    PP P        P H PVIIYT +P+IIHTNP  F  LVQ+
Sbjct: 43  PPTLKVNKDSHVIKK----PPSPSSFSSAAKPRH-PVIIYTHTPRIIHTNPKDFMALVQK 102

Query: 74  LTSCQSNSPD-------THPVQSKTISISMSMQTSSTEQGMESVG 104
           LT    +  D       T P   K+I+ ++S  T   +      G
Sbjct: 103 LTGMTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCG 142

[Close]

BLAST of CmaCh04G024300 vs. TrEMBL
Match: A0A0A0KI80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.1e-26
Identity = 95/182 (52.20%), Postives = 112/182 (61.54%), Query Frame = 1


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIKKLPQLPPPPPHHRPVIIYTDSPKIIHTNPTQFK 60
           M E+K LQL G RPSALKI+K SH IKK P LPPP PH RPVIIYT SPKIIHT+PT+FK
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKK-PPLPPPQPH-RPVIIYTVSPKIIHTDPTEFK 60

Query: 61  ELVQRLT------SCQSNSP---DTHPVQSKTISISMSMQTSSTEQGMESVGRFPTGILP 120
           +LVQRLT      S  SN     D HP     ISI  +      + G++ +     GIL 
Sbjct: 61  DLVQRLTGHHQPPSSSSNHALVHDHHPPPDH-ISIPTTDDPIDDQAGVDRI--IAHGILS 120

Query: 121 PMPEFLLPVM-------PTQPSAST--DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPD 163
           P P  L P+        P  P+A+   DL+SLT +F D S IA N+F+SSLDFF  NFPD
Sbjct: 121 PTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPD 177

[Close]

BLAST of CmaCh04G024300 vs. TrEMBL
Match: M5VJC3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026048mg PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.9e-16
Identity = 78/208 (37.50%), Postives = 104/208 (50.00%), Query Frame = 1


Query: 4   RKHLQLHGHRPSALKISKHSHNIKKLPQLPPPP-------PH-----HRPVIIYTDSPKI 63
           R+ LQL G RP+ L++ K SH IKK P +P P        PH      +PVIIYT SPK+
Sbjct: 10  RRELQLQGPRPTPLRVHKDSHKIKKPPIVPQPSSQPPSQQPHLYQQPRQPVIIYTVSPKV 69

Query: 64  IHTNPTQFKELVQRLTSCQSNSPDTHPVQS----------------------KTIS---I 123
           IHTNP++F +LVQRLT   S+S  + P Q+                      KT S   +
Sbjct: 70  IHTNPSEFMDLVQRLTGLNSSSSSSPPTQNNPNNPPNYDNSNNNNSRDDQVMKTSSAQDV 129

Query: 124 SMSMQTSSTEQGMESVGRFPTGILPPMPEFLLPV-----MPTQPSASTDLSSLTH----Y 161
           +  M+    E G+   G FP GIL P P  L P+      P   S   DLS + H    +
Sbjct: 130 AQGMEMDGDEGGVRQKGLFP-GILSPGPASLNPIPSNFFSPPSDSFFHDLSPVLHGNRNF 189

[Close]

BLAST of CmaCh04G024300 vs. TrEMBL
Match: A0A0B2PJC9_GLYSO (Protein MKS1 OS=Glycine soja GN=glysoja_040860 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.9e-11
Identity = 68/187 (36.36%), Postives = 89/187 (47.59%), Query Frame = 1


Query: 8   QLHGHRPSALKISKHSHNIKKLPQLPPP-----PPHHRPVIIYTDSPKIIHTNPTQFKEL 67
           QL G RP  L+I+K SH IKK P + PP     PP  +PVIIYT SPK+IHT P+ F  L
Sbjct: 15  QLQGPRPPPLRINKDSHKIKKKPPVAPPSSQPQPPLRQPVIIYTVSPKVIHTTPSDFMSL 74

Query: 68  VQRLTSCQSNSPDTHPVQSKTISISMSMQTSSTEQGMESVGRFPT---GILPPMPEFLLP 127
           VQRLTS  S+S  +    S  +SI           G   + + P    GIL P P   L 
Sbjct: 75  VQRLTSSSSSSSSS---SSNKVSIDPLNGNKGHGGGHGVLLKRPNMFHGILSPGPSSSLS 134

Query: 128 VMPTQ----PSASTDLSSLTH----------YFQDSSI--------APNNFAS----SLD 161
            +P+     PS   ++ S  H           F + +         +P+NF S    S+D
Sbjct: 135 PIPSNFFSPPSIDPNMGSFYHDLSPILRNNRNFMEGTTTTATFIMPSPSNFVSPRTPSID 194

[Close]

BLAST of CmaCh04G024300 vs. TrEMBL
Match: V7AY52_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G136500g PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.1e-11
Identity = 48/117 (41.03%), Postives = 65/117 (55.56%), Query Frame = 1


Query: 4   RKHLQLHGHRPSALKISKHSHNIKKLPQLPPP----PPHHRPVIIYTDSPKIIHTNPTQF 63
           R+ LQL G RP+ L+ISK SH IKK P  P P    PP  +P+IIYT SPK+IHT P  F
Sbjct: 50  RRELQLQGPRPTPLRISKDSHKIKKPPLAPQPSHPQPPPRQPIIIYTVSPKVIHTTPNDF 109

Query: 64  KELVQRLTSCQSNSP----------DTHPVQSKTISISMSMQTSSTEQGMESVGRFP 107
             LVQRLT   S+S           +  P  S    +S + + ++ E+ +  +G+ P
Sbjct: 110 MNLVQRLTGSSSSSSSNSAALPTIINNDPFNSGGGMVSPAARYATVEKALSPMGKKP 166

[Close]

BLAST of CmaCh04G024300 vs. TrEMBL
Match: K7KUQ0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G124400 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-11
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 4  RKHLQLHGHRPSALKISKHSHNIKKLPQLPPP-----PPHHRPVIIYTDSPKIIHTNPTQ 63
          R+ LQL G RP+ L+I+K SH IKK P  P P     PP  +P+IIYT SPK+IHT P+ 
Sbjct: 16 RRELQLQGPRPTPLRINKDSHKIKKPPLAPQPSHPHQPPPRQPIIIYTVSPKVIHTTPSD 75

Query: 64 FKELVQRLTSCQSNS 74
          F  LVQRLT   S+S
Sbjct: 76 FMNLVQRLTGSSSSS 90

[Close]

BLAST of CmaCh04G024300 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-10
Identity = 52/172 (30.23%), Postives = 77/172 (44.77%), Query Frame = 1


Query: 3   ERKHLQLHGHRPSALKISKHSHNIKKLPQLPPPPPH---------HRPVIIYTDSPKIIH 62
           +++ LQ+ G RPS L + K SH IKK P+ P PPP+           PV+IY  SPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TNPTQFKELVQRLTSCQSN-----------SPDTHPVQSKTISISMSMQTSSTEQGME-- 122
              ++F  +VQRLT   S            SP      ++  S     + ++ ++ +E  
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

Query: 123 -------SVGRFPTGILPPMPEFLLPVMPTQPSASTDLSSLTHYFQDSSIAP 146
                    G +  GIL P P  L       P+AST + S   Y Q    +P
Sbjct: 138 TAMEEAAEFGGYAPGILSPSPALL-------PTASTGIFS-PMYHQGGMFSP 181

[Close]

BLAST of CmaCh04G024300 vs. TAIR10
Match: AT1G68450.1 (AT1G68450.1 VQ motif-containing protein)

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-08
Identity = 33/63 (52.38%), Postives = 40/63 (63.49%), Query Frame = 1


Query: 8  QLHGHRPSALKISKHSHNIKKLPQLPPPP-PHHR--PVIIYTDSPKIIHTNPTQFKELVQ 67
          +++G RPS+LK++  SH IKK       P PH R  PVIIY  SPK+IHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of CmaCh04G024300 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 54.7 bits (130), Expect = 6.2e-08
Identity = 41/108 (37.96%), Postives = 49/108 (45.37%), Query Frame = 1


Query: 11  GHRPSALKISKHSHNIKKLPQLPPPPPHHRP-----------------VIIYTDSPKIIH 70
           G RP  LK+   SH I K P L PP P  +P                 VIIYT SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 71  TNPTQFKELVQRLTSCQSNSPDTHPVQSKTISISMSMQTSSTEQGMES 102
           T+P  F  LVQRLT   S S  +    S T +   +     T  G+ S
Sbjct: 73  THPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKDASTMVDTSHGLIS 120

[Close]

BLAST of CmaCh04G024300 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-07
Identity = 41/105 (39.05%), Postives = 52/105 (49.52%), Query Frame = 1


Query: 14  PSALKISKHSHNIKKLPQLPPPP--------PHHRPVIIYTDSPKIIHTNPTQFKELVQR 73
           P  LK++K SH IKK    PP P        P H PVIIYT +P+IIHTNP  F  LVQ+
Sbjct: 43  PPTLKVNKDSHVIKK----PPSPSSFSSAAKPRH-PVIIYTHTPRIIHTNPKDFMALVQK 102

Query: 74  LTSCQSNSPD-------THPVQSKTISISMSMQTSSTEQGMESVG 104
           LT    +  D       T P   K+I+ ++S  T   +      G
Sbjct: 103 LTGMTHSDEDLGGGNAMTDPGVVKSINRTVSEPTVDRKNNRNRCG 142

[Close]

BLAST of CmaCh04G024300 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 50.1 bits (118), Expect = 1.5e-06
Identity = 38/108 (35.19%), Postives = 48/108 (44.44%), Query Frame = 1


Query: 11  GHRPSALKISKHSHNIKKLPQLPPPPPHHRP-----------------VIIYTDSPKIIH 70
           G +P+ LK+   SH I K P L PP P  +P                 V IYT +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TNPTQFKELVQRLTSCQSNSPDTHPVQSKTISISMSMQTSSTEQGMES 102
           T+P  F  LVQRLT   S S  +    S T     +     T  G+ S
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTSTMVDTSHGLIS 120

[Close]

BLAST of CmaCh04G024300 vs. NCBI nr
Match: gi|449462192|ref|XP_004148825.1| (PREDICTED: protein MKS1-like [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 95/182 (52.20%), Postives = 112/182 (61.54%), Query Frame = 1


Query: 1   MAERKHLQLHGHRPSALKISKHSHNIKKLPQLPPPPPHHRPVIIYTDSPKIIHTNPTQFK 60
           M E+K LQL G RPSALKI+K SH IKK P LPPP PH RPVIIYT SPKIIHT+PT+FK
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKK-PPLPPPQPH-RPVIIYTVSPKIIHTDPTEFK 60

Query: 61  ELVQRLT------SCQSNSP---DTHPVQSKTISISMSMQTSSTEQGMESVGRFPTGILP 120
           +LVQRLT      S  SN     D HP     ISI  +      + G++ +     GIL 
Sbjct: 61  DLVQRLTGHHQPPSSSSNHALVHDHHPPPDH-ISIPTTDDPIDDQAGVDRI--IAHGILS 120

Query: 121 PMPEFLLPVM-------PTQPSAST--DLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPD 163
           P P  L P+        P  P+A+   DL+SLT +F D S IA N+F+SSLDFF  NFPD
Sbjct: 121 PTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPD 177

[Close]

BLAST of CmaCh04G024300 vs. NCBI nr
Match: gi|659082070|ref|XP_008441652.1| (PREDICTED: protein MKS1-like, partial [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 2.0e-24
Identity = 89/178 (50.00%), Postives = 107/178 (60.11%), Query Frame = 1


Query: 3   ERKHLQLHGHRPSALKISKHSHNIKKLPQLPPPPPHHRPVIIYTDSPKIIHTNPTQFKEL 62
           +++ LQL G RPSALKI+K SH IKK P LPPP PH RPVIIYT SPKIIHT+PTQFK+L
Sbjct: 4   KKRKLQLQGPRPSALKITKDSHKIKK-PPLPPPQPH-RPVIIYTVSPKIIHTDPTQFKDL 63

Query: 63  VQRLT------SCQSNSPDTHP-VQSKTISISMSMQTSSTEQGMESVGRFPTGILPPMPE 122
           VQRLT      S  SN    H       ISI ++        G++ +     GIL P P 
Sbjct: 64  VQRLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRI--IAHGILSPTPG 123

Query: 123 FLLPVMPT---------QPSASTDLSSLTHYFQD-SSIAPNNFASSLDFF-DNFPDFH 163
            L P+ PT           +A+ DL+SLT +F D S I  N+F+ SLDFF  NFPDFH
Sbjct: 124 LLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177

[Close]

BLAST of CmaCh04G024300 vs. NCBI nr
Match: gi|645264333|ref|XP_008237628.1| (PREDICTED: protein MKS1 [Prunus mume])

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 79/208 (37.98%), Postives = 104/208 (50.00%), Query Frame = 1


Query: 4   RKHLQLHGHRPSALKISKHSHNIKKLPQLPPP---PPHHRP---------VIIYTDSPKI 63
           R+ LQL G RP+ L++ K SH IKK P +P P   PP H+P         VIIYT SPK+
Sbjct: 10  RRELQLQGPRPTPLRVHKDSHKIKKPPIVPQPSSQPPSHQPHLYQQPRQPVIIYTVSPKV 69

Query: 64  IHTNPTQFKELVQRLTSCQSNSPDTHPVQS----------------------KTIS---I 123
           IHTNP+ F +LVQRLT   S+S  + P Q+                      KT S   +
Sbjct: 70  IHTNPSDFMDLVQRLTGLNSSSSSSPPTQNNPNNPPNYDNNNNNNSRDDQVMKTSSAQDV 129

Query: 124 SMSMQTSSTEQGMESVGRFPTGILPPMPEFLLPV-----MPTQPSASTDLSSLTH----Y 161
           S  M+    + G+   G FP GIL P P  L P+      P   S   DLS + H    +
Sbjct: 130 SQGMEMDGDDGGVRQKGLFP-GILSPGPASLNPIPSNFFSPPSDSFFHDLSPVLHGNRNF 189

[Close]

BLAST of CmaCh04G024300 vs. NCBI nr
Match: gi|595792449|ref|XP_007199973.1| (hypothetical protein PRUPE_ppa026048mg [Prunus persica])

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 78/208 (37.50%), Postives = 104/208 (50.00%), Query Frame = 1


Query: 4   RKHLQLHGHRPSALKISKHSHNIKKLPQLPPPP-------PH-----HRPVIIYTDSPKI 63
           R+ LQL G RP+ L++ K SH IKK P +P P        PH      +PVIIYT SPK+
Sbjct: 10  RRELQLQGPRPTPLRVHKDSHKIKKPPIVPQPSSQPPSQQPHLYQQPRQPVIIYTVSPKV 69

Query: 64  IHTNPTQFKELVQRLTSCQSNSPDTHPVQS----------------------KTIS---I 123
           IHTNP++F +LVQRLT   S+S  + P Q+                      KT S   +
Sbjct: 70  IHTNPSEFMDLVQRLTGLNSSSSSSPPTQNNPNNPPNYDNSNNNNSRDDQVMKTSSAQDV 129

Query: 124 SMSMQTSSTEQGMESVGRFPTGILPPMPEFLLPV-----MPTQPSASTDLSSLTH----Y 161
           +  M+    E G+   G FP GIL P P  L P+      P   S   DLS + H    +
Sbjct: 130 AQGMEMDGDEGGVRQKGLFP-GILSPGPASLNPIPSNFFSPPSDSFFHDLSPVLHGNRNF 189

[Close]

BLAST of CmaCh04G024300 vs. NCBI nr
Match: gi|470108489|ref|XP_004290549.1| (PREDICTED: protein MKS1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 86.3 bits (212), Expect = 5.5e-14
Identity = 80/206 (38.83%), Postives = 98/206 (47.57%), Query Frame = 1


Query: 4   RKHLQLHGHRPSALKISKHSHNIKKLPQLPPPP-------PHHRPVIIYTDSPKIIHTNP 63
           RK LQL G RP+ LKI K SH IKK P +P P        P  +PVIIYT SPKIIHTNP
Sbjct: 13  RKELQLQGPRPAPLKIHKDSHKIKKPPVVPQPSQANQPHQPPRQPVIIYTVSPKIIHTNP 72

Query: 64  TQFKELVQRLT---------SCQSNSP--DTHPVQSKTISISMSMQTSSTEQG------- 123
           + F  LVQRLT         SC S+SP  D           +M    SS  +G       
Sbjct: 73  SDFMNLVQRLTGLPPSNSSASCSSSSPRNDHQNTNGGGGESTMEQSRSSDHEGTMDMDDD 132

Query: 124 -----------MESVGRFPTGILPPMPEFLLPV-----MPTQPSASTDLSSLTH----YF 161
                      ++  G FP GIL P P  L P+      P   S   DLS + H    + 
Sbjct: 133 HDDRVHDTGLKLQQKGMFP-GILSPAPGSLPPIPSNFFSPPADSFFHDLSPVLHGNRNFI 192

The following BLAST results are available for this feature:

BLAST of CmaCh04G024300 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MKS1_ARATH	5.3e-09	30.23	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]
VQ8_ARATH	2.9e-07	52.38	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2...	[more]
VQ20_ARATH	4.2e-06	39.05	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]

BLAST of CmaCh04G024300 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI80_CUCSA	1.1e-26	52.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1	[more]
M5VJC3_PRUPE	6.9e-16	37.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026048mg PE=4 SV=1	[more]
A0A0B2PJC9_GLYSO	3.9e-11	36.36	Protein MKS1 OS=Glycine soja GN=glysoja_040860 PE=4 SV=1	[more]
V7AY52_PHAVU	5.1e-11	41.03	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G136500g PE=4 SV=1	[more]
K7KUQ0_SOYBN	8.8e-11	54.67	Uncharacterized protein OS=Glycine max GN=GLYMA_06G124400 PE=4 SV=1	[more]

BLAST of CmaCh04G024300 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18690.1	3.0e-10	30.23	MAP kinase substrate 1	[more]
AT1G68450.1	1.6e-08	52.38	VQ motif-containing protein	[more]
AT1G21326.1	6.2e-08	37.96	VQ motif-containing protein	[more]
AT3G18360.1	2.4e-07	39.05	VQ motif-containing protein	[more]
AT1G21320.1	1.5e-06	35.19	nucleotide binding;nucleic acid binding	[more]

BLAST of CmaCh04G024300 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462192\|ref\|XP_004148825.1\|	1.6e-26	52.20	PREDICTED: protein MKS1-like [Cucumis sativus]	[more]
gi\|659082070\|ref\|XP_008441652.1\|	2.0e-24	50.00	PREDICTED: protein MKS1-like, partial [Cucumis melo]	[more]
gi\|645264333\|ref\|XP_008237628.1\|	2.6e-16	37.98	PREDICTED: protein MKS1 [Prunus mume]	[more]
gi\|595792449\|ref\|XP_007199973.1\|	1.0e-15	37.50	hypothetical protein PRUPE_ppa026048mg [Prunus persica]	[more]
gi\|470108489\|ref\|XP_004290549.1\|	5.5e-14	38.83	PREDICTED: protein MKS1 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G024300.1	CmaCh04G024300.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 48..67 score: 2.
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 7..67 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G024300	Cucsa.077000	Cucumber (Gy14) v1	cgycmaB0131
CmaCh04G024300	Cla013849	Watermelon (97103) v1	cmawmB666
CmaCh04G024300	Csa6G338080	Cucumber (Chinese Long) v2	cmacuB771
CmaCh04G024300	ClCG08G006550	Watermelon (Charleston Gray)	cmawcgB678
CmaCh04G024300	CSPI06G18010	Wild cucumber (PI 183967)	cmacpiB781
CmaCh04G024300	CmoCh04G025470	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G024300	CmoCh15G006210	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G024300	Lsi08G005310	Bottle gourd (USVL1VR-Ls)	cmalsiB703
CmaCh04G024300	Cp4.1LG13g04200	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G024300	Cp4.1LG01g21070	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G024300	CsaV3_6G030890	Cucumber (Chinese Long) v3	cmacucB0910
CmaCh04G024300	Cla97C08G149360	Watermelon (97103) v2	cmawmbB786
CmaCh04G024300	Bhi04G001408	Wax gourd	cmawgoB0869
CmaCh04G024300	CsGy6G017490	Cucumber (Gy14) v2	cgybcmaB839
CmaCh04G024300	Carg15779	Silver-seed gourd	carcmaB0088
CmaCh04G024300	Carg01590	Silver-seed gourd	carcmaB1150

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G024300	CmaCh15G006170	Cucurbita maxima (Rimu)	cmacmaB325

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G024300	Cucumber (Gy14) v1	cgycmaB0142
CmaCh04G024300	Cucurbita moschata (Rifu)	cmacmoB675
CmaCh04G024300	Cucumber (Chinese Long) v2	cmacuB777
CmaCh04G024300	Melon (DHL92) v3.5.1	cmameB680
CmaCh04G024300	Cucurbita pepo (Zucchini)	cmacpeB754
CmaCh04G024300	Bottle gourd (USVL1VR-Ls)	cmalsiB652
CmaCh04G024300	Cucumber (Gy14) v2	cgybcmaB966
CmaCh04G024300	Melon (DHL92) v3.6.1	cmamedB763
CmaCh04G024300	Cucumber (Chinese Long) v3	cmacucB0919
CmaCh04G024300	Watermelon (97103) v2	cmawmbB795