Cucsa.077000 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.077000
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Protein MKS1
Location	scaffold00791 : 96254 .. 96787 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAGTCTCCCCCAAGATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCGCCCATTTCCTCCACTATTTTCAATCCCCCACCACAGGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

mRNA sequence

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAGTCTCCCCCAAGATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTgcccccgccgccgccgccgccggggATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

Coding sequence (CDS)

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCCGCCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAGTCTCCCCCAAGATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

Protein sequence

MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH*

Homology

[Close]

BLAST of Cucsa.077000 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 5.9e-15
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 3  EKKELQLQGPRPSALKITKDSHKIKKP---PLPPPQ--------PHRPVIIYTVSPKIIH 62
          +K++LQ+ GPRPS L + KDSHKIKKP   P PPP         P  PV+IY VSPK++H
Sbjct: 18 QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63 TDPTEFKDLVQRLTG 67
             +EF ++VQRLTG
Sbjct: 78 ATASEFMNVVQRLTG 92

[Close]

BLAST of Cucsa.077000 vs. Swiss-Prot
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-11
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 11 GPRPSALKITKDSHKI-KKPPLPPPQPHR------------------PVIIYTVSPKIIH 70
          GP+P+ LK+  DSHKI KKPPL PP P                    PV IYTV+P+IIH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71 TDPTEFKDLVQRLTGHHQPPSSSSN 77
          T P  F  LVQRLTG     ++SS+
Sbjct: 73 THPNNFMTLVQRLTGQTSTSTTSSS 97

[Close]

BLAST of Cucsa.077000 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-11
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 12  PRPSALKITKDSHKIKKPPLPPP-----QPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTG 67
           P P  LK+ KDSH IKKPP P       +P  PVIIYT +P+IIHT+P +F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Cucsa.077000 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-09
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 8   QLQGPRPSALKITKDSHKIKKPPL--PPPQPH---RPVIIYTVSPKIIHTDPTEFKDLVQ 67
           ++ G RPS+LK+  +SH IKK       P+PH    PVIIY  SPK+IHT   +F  LVQ
Sbjct: 8   EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

Query: 68  RLTG----HHQPPSSSSNHALVHDHHPPPDHISIPTTDD 98
           RLTG      +  S SS+  +  + +   D+ + P + D
Sbjct: 68  RLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQD 106

[Close]

BLAST of Cucsa.077000 vs. TrEMBL
Match: A0A0A0KI80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.7e-77
Identity = 147/177 (83.05%), Postives = 147/177 (83.05%), Query Frame = 1


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAG---------------- 120
           VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAG                
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 --------------APAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 148
                         APAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Cucsa.077000 vs. TrEMBL
Match: A0A151TGT1_CAJCA (Protein MKS1 OS=Cajanus cajan GN=KK1_012548 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-20
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPP------PQPHRPVIIYTVSPKIIHTDPTEF 63
           ++ELQLQGPRP+ L+I KDSHKIKKPPLPP      P P +P+IIYTVSPK+IHT P +F
Sbjct: 15  RRELQLQGPRPTPLRINKDSHKIKKPPLPPQASHPQPPPRQPIIIYTVSPKVIHTTPGDF 74

Query: 64  KDLVQRLTGHHQPPSSSSNHALVHDHHP 86
            +LVQRLTG     SSSS++   +++ P
Sbjct: 75  MNLVQRLTGSSSSSSSSSSNLEANNNDP 102

[Close]

BLAST of Cucsa.077000 vs. TrEMBL
Match: A0A0L9UFX9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g163700 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPP------PQPHRPVIIYTVSPKIIHTDPTEF 63
           ++ELQLQGPRP+ L+I KDSHKIKKPPLPP      P P +P+IIYTVSPK+IHT P++F
Sbjct: 14  RRELQLQGPRPTPLRINKDSHKIKKPPLPPQPSHPQPPPRQPIIIYTVSPKVIHTTPSDF 73

Query: 64  KDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGAPAAAA 111
            +LVQRLTG     S+++N++      P P+ I+    +DP +   G  + AA
Sbjct: 74  MNLVQRLTGSTSSSSNNNNNS-----DPLPNIIN----NDPFNTGGGMVSPAA 117

[Close]

BLAST of Cucsa.077000 vs. TrEMBL
Match: A0A0S3RDK1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G150400 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPP------PQPHRPVIIYTVSPKIIHTDPTEF 63
           ++ELQLQGPRP+ L+I KDSHKIKKPPLPP      P P +P+IIYTVSPK+IHT P++F
Sbjct: 35  RRELQLQGPRPTPLRINKDSHKIKKPPLPPQPSHPQPPPRQPIIIYTVSPKVIHTTPSDF 94

Query: 64  KDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGAPAAAA 111
            +LVQRLTG     S+++N++      P P+ I+    +DP +   G  + AA
Sbjct: 95  MNLVQRLTGSTSSSSNNNNNS-----DPLPNIIN----NDPFNTGGGMVSPAA 138

[Close]

BLAST of Cucsa.077000 vs. TrEMBL
Match: K7KUQ0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G124400 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-19
Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPP-------PQPHRPVIIYTVSPKIIHTDPTE 63
           ++ELQLQGPRP+ L+I KDSHKIKKPPL P       P P +P+IIYTVSPK+IHT P++
Sbjct: 16  RRELQLQGPRPTPLRINKDSHKIKKPPLAPQPSHPHQPPPRQPIIIYTVSPKVIHTTPSD 75

Query: 64  FKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGAPAAAAA 112
           F +LVQRLTG     SSSS+  +V  ++    H+      DP ++  G   + AA
Sbjct: 76  FMNLVQRLTG----SSSSSSAEVVMSNNNNTTHV------DPFNNGGGGMVSPAA 120

[Close]

BLAST of Cucsa.077000 vs. TAIR10
Match: AT3G18690.1 (AT3G18690.1 MAP kinase substrate 1)

HSP 1 Score: 82.0 bits (201), Expect = 3.3e-16
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 3  EKKELQLQGPRPSALKITKDSHKIKKP---PLPPPQ--------PHRPVIIYTVSPKIIH 62
          +K++LQ+ GPRPS L + KDSHKIKKP   P PPP         P  PV+IY VSPK++H
Sbjct: 18 QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63 TDPTEFKDLVQRLTG 67
             +EF ++VQRLTG
Sbjct: 78 ATASEFMNVVQRLTG 92

[Close]

BLAST of Cucsa.077000 vs. TAIR10
Match: AT1G21326.1 (AT1G21326.1 VQ motif-containing protein)

HSP 1 Score: 75.5 bits (184), Expect = 3.1e-14
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 11 GPRPSALKITKDSHKI-KKPPLPPPQPHR------------------PVIIYTVSPKIIH 70
          GPRP  LK+  DSHKI KKPPL PP P                    PVIIYTVSP+IIH
Sbjct: 13 GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 71 TDPTEFKDLVQRLTGHHQPPSSSSNHA 79
          T P  F  LVQRLTG     ++SS+++
Sbjct: 73 THPNNFMTLVQRLTGKTSTSTTSSSYS 99

[Close]

BLAST of Cucsa.077000 vs. TAIR10
Match: AT1G21320.1 (AT1G21320.1 nucleotide binding;nucleic acid binding)

HSP 1 Score: 70.9 bits (172), Expect = 7.7e-13
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 11 GPRPSALKITKDSHKI-KKPPLPPPQPHR------------------PVIIYTVSPKIIH 70
          GP+P+ LK+  DSHKI KKPPL PP P                    PV IYTV+P+IIH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71 TDPTEFKDLVQRLTGHHQPPSSSSN 77
          T P  F  LVQRLTG     ++SS+
Sbjct: 73 THPNNFMTLVQRLTGQTSTSTTSSS 97

[Close]

BLAST of Cucsa.077000 vs. TAIR10
Match: AT3G18360.1 (AT3G18360.1 VQ motif-containing protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 1


Query: 12  PRPSALKITKDSHKIKKPPLPPP-----QPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTG 67
           P P  LK+ KDSH IKKPP P       +P  PVIIYT +P+IIHT+P +F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Cucsa.077000 vs. TAIR10
Match: AT1G68450.1 (AT1G68450.1 VQ motif-containing protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-10
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 8   QLQGPRPSALKITKDSHKIKKPPL--PPPQPH---RPVIIYTVSPKIIHTDPTEFKDLVQ 67
           ++ G RPS+LK+  +SH IKK       P+PH    PVIIY  SPK+IHT   +F  LVQ
Sbjct: 8   EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

Query: 68  RLTG----HHQPPSSSSNHALVHDHHPPPDHISIPTTDD 98
           RLTG      +  S SS+  +  + +   D+ + P + D
Sbjct: 68  RLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQD 106

[Close]

BLAST of Cucsa.077000 vs. NCBI nr
Match: gi|449462192|ref|XP_004148825.1| (PREDICTED: protein MKS1-like [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 2.4e-77
Identity = 147/177 (83.05%), Postives = 147/177 (83.05%), Query Frame = 1


Query: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60
           MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAG---------------- 120
           VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAG                
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 --------------APAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 148
                         APAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Cucsa.077000 vs. NCBI nr
Match: gi|659082070|ref|XP_008441652.1| (PREDICTED: protein MKS1-like, partial [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 5.3e-64
Identity = 131/176 (74.43%), Postives = 135/176 (76.70%), Query Frame = 1


Query: 3   EKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDLVQ 62
           +K++LQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPT+FKDLVQ
Sbjct: 4   KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 63

Query: 63  RLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGA----------------- 122
           RLTGHHQPPSSSSNHALVHDH PPPD ISIP TD  IDDQAG                  
Sbjct: 64  RLTGHHQPPSSSSNHALVHDH-PPPDPISIPITD-AIDDQAGGVDRIIAHGILSPTPGLL 123

Query: 123 --------------PAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 148
                          AAAA GDLTSLTQFFHDLSPI ANHFS SLDFFQQNFPDFH
Sbjct: 124 PPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177

[Close]

BLAST of Cucsa.077000 vs. NCBI nr
Match: gi|951059305|ref|XP_014522373.1| (PREDICTED: protein MKS1 [Vigna radiata var. radiata])

HSP 1 Score: 111.7 bits (278), Expect = 1.1e-21
Identity = 59/113 (52.21%), Postives = 78/113 (69.03%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPP------PQPHRPVIIYTVSPKIIHTDPTEF 63
           ++ELQLQGPRP+ L+I KDSHKIKKPPLPP      P P +P+IIYTVSPK+IHT P++F
Sbjct: 31  RRELQLQGPRPTPLRINKDSHKIKKPPLPPQPSHPQPPPRQPIIIYTVSPKVIHTTPSDF 90

Query: 64  KDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGAPAAAA 111
            +LVQRLTG     SSSS++   ++  P P+ I+    +DP +   G  + AA
Sbjct: 91  MNLVQRLTGSTSSSSSSSSNNNNNNSDPLPNIIN----NDPFNTGGGMVSPAA 139

[Close]

BLAST of Cucsa.077000 vs. NCBI nr
Match: gi|658027252|ref|XP_008349061.1| (PREDICTED: protein MKS1-like [Malus domestica])

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 69/178 (38.76%), Postives = 90/178 (50.56%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPPP---------------QPHRPVIIYTVSPK 63
           ++ELQLQGPRP+ L+I KDSHKIKKPP+ P                QP +PVIIYTVSPK
Sbjct: 10  RRELQLQGPRPTPLRIHKDSHKIKKPPVVPQPSQQPNQQQQPHHYQQPRQPVIIYTVSPK 69

Query: 64  IIHTDPTEFKDLVQRLTG---------HHQPPSSSSNHALVHDHHPPPDHISIPTTDDPI 123
           +IHT+P+EF DLVQRLTG            PPS+++ + L HD++  P          P 
Sbjct: 70  VIHTNPSEFMDLVQRLTGLRRSNSSTTSSSPPSNNNINPLNHDNYNNP----------PA 129

Query: 124 DDQAGAPAAAAAGDLTSLTQFFHD------------------LSPIAANHFSSSLDFF 140
            D  G   ++ A D+    +   D                  L+PI +N FS   D F
Sbjct: 130 HDDQGMKKSSTAQDVVEEMEIMDDGGVKKGLFPGILSPGPASLTPIPSNFFSPPADSF 177

[Close]

BLAST of Cucsa.077000 vs. NCBI nr
Match: gi|694449728|ref|XP_009350442.1| (PREDICTED: protein MKS1-like [Pyrus x bretschneideri])

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-20
Identity = 82/209 (39.23%), Postives = 104/209 (49.76%), Query Frame = 1


Query: 4   KKELQLQGPRPSALKITKDSHKIKKPPLPPP---------------QPHRPVIIYTVSPK 63
           ++ELQLQGPRP+ L+I KDSHKIKKPP+ P                QP +PVIIYTVSPK
Sbjct: 10  RRELQLQGPRPTPLRIHKDSHKIKKPPVVPQPSQQPNQQQQPHHYQQPRQPVIIYTVSPK 69

Query: 64  IIHTDPTEFKDLVQRLTG---------HHQPPSSSSNHALVHD-HHPPPDH-----ISIP 123
           +IHT+P+EF DLVQRLTG            PPS+++ + L HD ++ PP H         
Sbjct: 70  VIHTNPSEFMDLVQRLTGLPRSNSSTTSSSPPSNNNINPLNHDNYNNPPAHDDQGMKKNS 129

Query: 124 TTDDPID-----DQAGAPAAAAAGDLT----SLT------------QFFHDLSPI----- 145
           T  D ++     D  G       G L+    SLT             FFHDLSP+     
Sbjct: 130 TAQDVVEEMEIMDDGGVKKGLFPGILSPGPASLTPIPSNFFSPPADSFFHDLSPVLYGNR 189

The following BLAST results are available for this feature:

BLAST of Cucsa.077000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MKS1_ARATH	5.9e-15	53.33	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]
NSRB_ARATH	1.4e-11	47.06	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1	[more]
VQ20_ARATH	3.0e-11	56.67	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]
VQ8_ARATH	4.8e-09	39.39	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2...	[more]

BLAST of Cucsa.077000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI80_CUCSA	1.7e-77	83.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1	[more]
A0A151TGT1_CAJCA	1.5e-20	59.09	Protein MKS1 OS=Cajanus cajan GN=KK1_012548 PE=4 SV=1	[more]
A0A0L9UFX9_PHAAN	1.9e-20	50.44	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g163700 PE=4 SV=1	[more]
A0A0S3RDK1_PHAAN	1.9e-20	50.44	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G150400 PE=...	[more]
K7KUQ0_SOYBN	1.6e-19	49.57	Uncharacterized protein OS=Glycine max GN=GLYMA_06G124400 PE=4 SV=1	[more]

BLAST of Cucsa.077000 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18690.1	3.3e-16	53.33	MAP kinase substrate 1	[more]
AT1G21326.1	3.1e-14	49.43	VQ motif-containing protein	[more]
AT1G21320.1	7.7e-13	47.06	nucleotide binding;nucleic acid binding	[more]
AT3G18360.1	1.7e-12	56.67	VQ motif-containing protein	[more]
AT1G68450.1	2.7e-10	39.39	VQ motif-containing protein	[more]

BLAST of Cucsa.077000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462192\|ref\|XP_004148825.1\|	2.4e-77	83.05	PREDICTED: protein MKS1-like [Cucumis sativus]	[more]
gi\|659082070\|ref\|XP_008441652.1\|	5.3e-64	74.43	PREDICTED: protein MKS1-like, partial [Cucumis melo]	[more]
gi\|951059305\|ref\|XP_014522373.1\|	1.1e-21	52.21	PREDICTED: protein MKS1 [Vigna radiata var. radiata]	[more]
gi\|658027252\|ref\|XP_008349061.1\|	1.2e-20	38.76	PREDICTED: protein MKS1-like [Malus domestica]	[more]
gi\|694449728\|ref\|XP_009350442.1\|	2.1e-20	39.23	PREDICTED: protein MKS1-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.077000.1	Cucsa.077000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 45..71 score: 7.0
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 2..66 score: 6.0
None	No IPR available	PANTHER	PTHR33143:SF5	SUBFAMILY NOT NAMED	coord: 2..66 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.077000	Cla013849	Watermelon (97103) v1	cgywmB082
Cucsa.077000	Csa6G338080	Cucumber (Chinese Long) v2	cgycuB074
Cucsa.077000	MELO3C008398	Melon (DHL92) v3.5.1	cgymeB079
Cucsa.077000	ClCG08G006550	Watermelon (Charleston Gray)	cgywcgB080
Cucsa.077000	CSPI06G18010	Wild cucumber (PI 183967)	cgycpiB077
Cucsa.077000	CmaCh15G006170	Cucurbita maxima (Rimu)	cgycmaB0130
Cucsa.077000	CmaCh04G024300	Cucurbita maxima (Rimu)	cgycmaB0131
Cucsa.077000	CmoCh04G025470	Cucurbita moschata (Rifu)	cgycmoB0128
Cucsa.077000	CmoCh15G006210	Cucurbita moschata (Rifu)	cgycmoB0127
Cucsa.077000	Lsi08G005310	Bottle gourd (USVL1VR-Ls)	cgylsiB079
Cucsa.077000	Cp4.1LG13g04200	Cucurbita pepo (Zucchini)	cgycpeB0127
Cucsa.077000	Cp4.1LG01g21070	Cucurbita pepo (Zucchini)	cgycpeB0128
Cucsa.077000	MELO3C008398.2	Melon (DHL92) v3.6.1	cgymedB078
Cucsa.077000	CsaV3_6G030890	Cucumber (Chinese Long) v3	cgycucB078
Cucsa.077000	Cla97C08G149360	Watermelon (97103) v2	cgywmbB076
Cucsa.077000	Bhi04G001408	Wax gourd	cgywgoB089
Cucsa.077000	Carg15779	Silver-seed gourd	carcgyB0070
Cucsa.077000	Carg01590	Silver-seed gourd	carcgyB0944

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.077000	Cucurbita pepo (Zucchini)	cgycpeB0129