Cla013849 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013849
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR008889 VQ
Location	Chr8 : 15870282 .. 15870770 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGAAAGAAAAGAGGTTCAACTCCAAGGCCCCCGCCCCGCCGCCCTCAAAATCACCAAAGACTCCCACAAGATCAAAAAGCCGCCACTCCCGCCACCGCACCGGCCCGTCATCATTTACACCGTCTCCCCCAAGATCATCCACACCGATCCTACCGAGTTCAAGGACTTGGTACAACGCCTCACCGGCTGCCAACCCTCTTCGTCCTCCAATGATGCCCTCGACCATCCATCGCATACCACTATGTCGATGCCGATGATTGCGAATAGTACGGATCAAGGAATGGAGAGGGTAGGCCATGGGATATTATCGCCAACGCCGAGGTTGCTGCCGCCGATTTCGCCGAATATTTTCACTCCGCCGCCACAAGCCACCACTGATCTCAGCCCTTTTGCACACTTTTTCCAAGACTTTAGCCCTATAGCTCCCAATAATATTTCTTCATCTCTAGATTTCTTCCAACAAAATTTCCCTGATTTCCATTAA

mRNA sequence

ATGCCTGAAAGAAAAGAGGTTCAACTCCAAGGCCCCCGCCCCGCCGCCCTCAAAATCACCAAAGACTCCCACAAGATCAAAAAGCCGCCACTCCCGCCACCGCACCGGCCCGTCATCATTTACACCGTCTCCCCCAAGATCATCCACACCGATCCTACCGAGTTCAAGGACTTGGTACAACGCCTCACCGGCTGCCAACCCTCTTCGTCCTCCAATGATGCCCTCGACCATCCATCGCATACCACTATGTCGATGCCGATGATTGCGAATAGTACGGATCAAGGAATGGAGAGGGTAGGCCATGGGATATTATCGCCAACGCCGAGGTTGCTGCCGCCGATTTCGCCGAATATTTTCACTCCGCCGCCACAAGCCACCACTGATCTCAGCCCTTTTGCACACTTTTTCCAAGACTTTAGCCCTATAGCTCCCAATAATATTTCTTCATCTCTAGATTTCTTCCAACAAAATTTCCCTGATTTCCATTAA

Coding sequence (CDS)

ATGCCTGAAAGAAAAGAGGTTCAACTCCAAGGCCCCCGCCCCGCCGCCCTCAAAATCACCAAAGACTCCCACAAGATCAAAAAGCCGCCACTCCCGCCACCGCACCGGCCCGTCATCATTTACACCGTCTCCCCCAAGATCATCCACACCGATCCTACCGAGTTCAAGGACTTGGTACAACGCCTCACCGGCTGCCAACCCTCTTCGTCCTCCAATGATGCCCTCGACCATCCATCGCATACCACTATGTCGATGCCGATGATTGCGAATAGTACGGATCAAGGAATGGAGAGGGTAGGCCATGGGATATTATCGCCAACGCCGAGGTTGCTGCCGCCGATTTCGCCGAATATTTTCACTCCGCCGCCACAAGCCACCACTGATCTCAGCCCTTTTGCACACTTTTTCCAAGACTTTAGCCCTATAGCTCCCAATAATATTTCTTCATCTCTAGATTTCTTCCAACAAAATTTCCCTGATTTCCATTAA

Protein sequence

MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPPHRPVIIYTVSPKIIHTDPTEFKDLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPRLLPPISPNIFTPPPQATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH

Homology

[Close]

BLAST of Cla013849 vs. Swiss-Prot
Match: MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 62/183 (33.88%), Postives = 83/183 (45.36%), Query Frame = 1


Query: 3   ERKEVQLQGPRPAALKITKDSHKIKKPP---LPPPHR----------PVIIYTVSPKIIH 62
           +++++Q+ GPRP+ L + KDSHKIKKPP    PPP+R          PV+IY VSPK++H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVVH 77

Query: 63  TDPTEFKDLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILSPTPR 122
              +EF ++VQRLTG     SS   L+      +S      ST+    R G     P  R
Sbjct: 78  ATASEFMNVVQRLTGI----SSGVFLESGGGGDVSPAARLASTENASPRGGK---EPAAR 137

Query: 123 --------------LLPPISPNIFTPP----PQATTDL-SPFAHFFQDFSPIAPNNISSS 154
                              +P I +P     P A+T + SP  H    FSP  P  + S 
Sbjct: 138 DETVEINTAMEEAAEFGGYAPGILSPSPALLPTASTGIFSPMYHQGGMFSPAIPLGLFSP 193

[Close]

BLAST of Cla013849 vs. Swiss-Prot
Match: NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 52/133 (39.10%), Postives = 59/133 (44.36%), Query Frame = 1


Query: 11  GPRPAALKITKDSHKI-KKPPLPPPHR--------------------PVIIYTVSPKIIH 70
           GP+P  LK+  DSHKI KKPPL PPH                     PV IYTV+P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 71  TDPTEFKDLVQRLTG----CQPSSSSNDALDHPSHTTMSMPMIANSTDQGMERVGHGILS 119
           T P  F  LVQRLTG       SSSS+ +   P  T+             M    HG++S
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSSTSEPKDTST------------MVDTSHGLIS 132

[Close]

BLAST of Cla013849 vs. Swiss-Prot
Match: VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-11
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 12  PRPAALKITKDSHKIKKPPLPP-------PHRPVIIYTVSPKIIHTDPTEFKDLVQRLTG 65
           P P  LK+ KDSH IKKPP P        P  PVIIYT +P+IIHT+P +F  LVQ+LTG
Sbjct: 41  PSPPTLKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTG 100

[Close]

BLAST of Cla013849 vs. Swiss-Prot
Match: VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-08
Identity = 45/126 (35.71%), Postives = 59/126 (46.83%), Query Frame = 1


Query: 8   QLQGPRPAALKITKDSHKIKKPPL----PPPH---RPVIIYTVSPKIIHTDPTEFKDLVQ 67
           ++ G RP++LK+  +SH IKK       P PH    PVIIY  SPK+IHT   +F  LVQ
Sbjct: 8   EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

Query: 68  RLTGCQPSSSSNDALDHPSHTTMSMPMIANSTDQ--GMERVGHGILSPTPRLLPPISPNI 125
           RLTG       N +    S  T  + +  ++T      +R     L+  P L  P S  +
Sbjct: 68  RLTGLDEIIRRNTSESSSSVVTEEVNVGDDNTAAPFSQDRTQRQKLTDMP-LFTPSSMTL 127

[Close]

BLAST of Cla013849 vs. TrEMBL
Match: A0A0A0KI80_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 122/177 (68.93%), Postives = 133/177 (75.14%), Query Frame = 1


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPP--HRPVIIYTVSPKIIHTDPTEFKDL 60
           MPE+KE+QLQGPRP+ALKITKDSHKIKKPPLPPP  HRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGCQ--PSSSSNDALDHPSHTT---MSMPMIANSTDQ--GMER-VGHGILSPTPRL 120
           VQRLTG    PSSSSN AL H  H     +S+P   +  D   G++R + HGILSPTP L
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 LPPISPNIFTPPPQATT-----DLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           LPPIS  IF PPPQA       DL+    FF D SPIA N+ SSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Cla013849 vs. TrEMBL
Match: M5VJC3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026048mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.8e-25
Identity = 87/208 (41.83%), Postives = 107/208 (51.44%), Query Frame = 1


Query: 4   RKEVQLQGPRPAALKITKDSHKIKKPPLPP----------------PHRPVIIYTVSPKI 63
           R+E+QLQGPRP  L++ KDSHKIKKPP+ P                P +PVIIYTVSPK+
Sbjct: 10  RRELQLQGPRPTPLRVHKDSHKIKKPPIVPQPSSQPPSQQPHLYQQPRQPVIIYTVSPKV 69

Query: 64  IHTDPTEFKDLVQRLTGCQPSSSS-----NDALDHPSHTT----------MSMPMIANST 123
           IHT+P+EF DLVQRLTG   SSSS     N+  + P++            +     A   
Sbjct: 70  IHTNPSEFMDLVQRLTGLNSSSSSSPPTQNNPNNPPNYDNSNNNNSRDDQVMKTSSAQDV 129

Query: 124 DQGMERVGH-----------GILSPTPRLLPPISPNIFTPPPQA-TTDLSPFAH----FF 161
            QGME  G            GILSP P  L PI  N F+PP  +   DLSP  H    F 
Sbjct: 130 AQGMEMDGDEGGVRQKGLFPGILSPGPASLNPIPSNFFSPPSDSFFHDLSPVLHGNRNFI 189

[Close]

BLAST of Cla013849 vs. TrEMBL
Match: A0A151R6L2_CAJCA (Protein MKS1 OS=Cajanus cajan GN=KK1_040566 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24
Identity = 78/186 (41.94%), Postives = 96/186 (51.61%), Query Frame = 1


Query: 4   RKEVQLQGPRPAALKITKDSHKIKKPPLPPP--------HRPVIIYTVSPKIIHTDPTEF 63
           ++E+QLQGPRP  L+I KDSHKIKKPP+ PP          PVIIYTVSPK+IHT P++F
Sbjct: 14  KRELQLQGPRPTPLRINKDSHKIKKPPVAPPPAQPQAPPRLPVIIYTVSPKVIHTTPSDF 73

Query: 64  KDLVQRLTGCQPSSSSNDALD-------------------------HPSHTTMSM---PM 123
             LVQRLTG   SSSS+ + D                           + TT S+   P 
Sbjct: 74  MSLVQRLTGSSSSSSSSSSSDKVATDPLTGDKGHIPVSPAARYAAIEMARTTQSIKHNPS 133

Query: 124 IANSTDQGMERVGH-------GILSPTPRLLPPISPNIFTPPPQATTDLSPFAHFFQDFS 147
             +    G+E VGH       GILSP P  L PI  N F+PP   + D +    FF D S
Sbjct: 134 ENSGDVGGVEIVGHERPNMFHGILSPGPASLSPIPSNFFSPP---SNDPNNMVSFFNDLS 193

[Close]

BLAST of Cla013849 vs. TrEMBL
Match: A0A061FH83_THECC (VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_035487 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 78/184 (42.39%), Postives = 97/184 (52.72%), Query Frame = 1


Query: 8   QLQGPRPAALKITKDSHKIKKPPLPPP---------HRPVIIYTVSPKIIHTDPTEFKDL 67
           +LQGPRPA LK+ KDS+KIKKPPL P            PVIIYTVSPK+IHT+P++F DL
Sbjct: 15  ELQGPRPAPLKVRKDSYKIKKPPLAPQPVQQPPAQIRPPVIIYTVSPKVIHTNPSDFMDL 74

Query: 68  VQRLTGCQPSSSSNDAL-----DHPSHTTMS--MPMIANST------------------- 127
           VQRLTG   +SS + +L      HP H T +   P    +T                   
Sbjct: 75  VQRLTGSTSASSGSSSLPSSTSSHPFHDTRAAISPAARFATIEKTKSPEGKKQQISEENF 134

Query: 128 --------DQGMERVGH--GILSPTPRLLPPISPNIFTPPPQATTDLSPFAHFFQDFSPI 147
                   + G+ER     GILSP P  LPPISPN F+PP    +     ++FFQD SP+
Sbjct: 135 GFVQGVEMNHGVERTSFFPGILSPGPTSLPPISPNFFSPPFDPNS-----SNFFQDLSPV 193

[Close]

BLAST of Cla013849 vs. TrEMBL
Match: B9MZA0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05910g PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-23
Identity = 69/170 (40.59%), Postives = 95/170 (55.88%), Query Frame = 1


Query: 4   RKEVQLQGPRPAALKITKDSHKIKKPPLPPPHRPVIIYTVSPKIIHTDPTEFKDLVQRLT 63
           +KE+Q+QGPRP+AL++ + SHKIKKPPLPP  +PVIIY VSPKIIH + + F  +VQRLT
Sbjct: 24  KKEIQIQGPRPSALRLHQGSHKIKKPPLPPQRQPVIIYAVSPKIIHAEESNFMAVVQRLT 83

Query: 64  GCQPSSSSND----------ALDHPSHTTMSMPMIAN--STDQGMERVGH-------GIL 123
           G   +  S+D          A +  S   ++ P   N  S D  ME +         GIL
Sbjct: 84  GLSSADFSHDGSVSPAARLAATEKASPRELTRPSTINDSSNDDLMEMIEELDFGQFPGIL 143

Query: 124 SPTPRLLPPISPNIFTPPPQATTDLSPFAHFFQDFSPIAPNNISSSLDFF 155
           SP P +LPP+    F+P    +TD +    F+ D   ++P   +S   FF
Sbjct: 144 SPAPAMLPPVPTGFFSP---VSTDANISQSFWNDNYSMSPLFTASPSGFF 190

[Close]

BLAST of Cla013849 vs. NCBI nr
Match: gi|449462192|ref|XP_004148825.1| (PREDICTED: protein MKS1-like [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.7e-55
Identity = 122/177 (68.93%), Postives = 133/177 (75.14%), Query Frame = 1


Query: 1   MPERKEVQLQGPRPAALKITKDSHKIKKPPLPPP--HRPVIIYTVSPKIIHTDPTEFKDL 60
           MPE+KE+QLQGPRP+ALKITKDSHKIKKPPLPPP  HRPVIIYTVSPKIIHTDPTEFKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 61  VQRLTGCQ--PSSSSNDALDHPSHTT---MSMPMIANSTDQ--GMER-VGHGILSPTPRL 120
           VQRLTG    PSSSSN AL H  H     +S+P   +  D   G++R + HGILSPTP L
Sbjct: 61  VQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 121 LPPISPNIFTPPPQATT-----DLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           LPPIS  IF PPPQA       DL+    FF D SPIA N+ SSSLDFFQQNFPDFH
Sbjct: 121 LPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Cla013849 vs. NCBI nr
Match: gi|659082070|ref|XP_008441652.1| (PREDICTED: protein MKS1-like, partial [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.7e-53
Identity = 119/174 (68.39%), Postives = 134/174 (77.01%), Query Frame = 1


Query: 3   ERKEVQLQGPRPAALKITKDSHKIKKPPLPPP--HRPVIIYTVSPKIIHTDPTEFKDLVQ 62
           +++++QLQGPRP+ALKITKDSHKIKKPPLPPP  HRPVIIYTVSPKIIHTDPT+FKDLVQ
Sbjct: 4   KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 63

Query: 63  RLTGCQ--PSSSSNDAL--DHPSHTTMSMPMIANSTDQ--GMER-VGHGILSPTPRLLPP 122
           RLTG    PSSSSN AL  DHP    +S+P+     DQ  G++R + HGILSPTP LLPP
Sbjct: 64  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 123

Query: 123 ISPNIF-TPPPQ----ATTDLSPFAHFFQDFSPIAPNNISSSLDFFQQNFPDFH 163
           ISP IF TPPPQ    AT DL+    FF D SPI  N+ S SLDFFQQNFPDFH
Sbjct: 124 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 177

[Close]

BLAST of Cla013849 vs. NCBI nr
Match: gi|657944194|ref|XP_008373255.1| (PREDICTED: protein MKS1 [Malus domestica])

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 87/215 (40.47%), Postives = 107/215 (49.77%), Query Frame = 1


Query: 4   RKEVQLQGPRPAALKITKDSHKIKKPPLPP-----------------PHRPVIIYTVSPK 63
           R+E+QLQGPRP  LKI KDSHKIKKPP+ P                 P +PVIIYTVSPK
Sbjct: 10  RRELQLQGPRPTPLKIHKDSHKIKKPPVVPQPSQLPNQQQQPHHYQQPRQPVIIYTVSPK 69

Query: 64  IIHTDPTEFKDLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIAN------STDQGMERVG 123
           +IHT+P+EF DLVQRLTG  PS+SS  +   P +  +  P   N        DQGM++  
Sbjct: 70  VIHTNPSEFMDLVQRLTGLPPSNSSTTSSSPPRNNNIHPPNYVNYNNPPAHDDQGMKKTS 129

Query: 124 ----------------------------HGILSPTPRLLPPISPNIFTPPPQA-TTDLSP 160
                                        GILSP P  L PI  N F+PP  +   DLSP
Sbjct: 130 TAQDVVEEMEIMDGGGGGDGGVKQKGLFPGILSPGPASLTPIPSNFFSPPADSFFHDLSP 189

[Close]

BLAST of Cla013849 vs. NCBI nr
Match: gi|694362603|ref|XP_009360755.1| (PREDICTED: protein MKS1-like [Pyrus x bretschneideri])

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 87/225 (38.67%), Postives = 109/225 (48.44%), Query Frame = 1


Query: 4   RKEVQLQGPRPAALKITKDSHKIKKPPLPP-----------------PHRPVIIYTVSPK 63
           R+E+QLQGPRP  LKI KDSHKIKKPP+ P                 P +PVIIYTVSPK
Sbjct: 10  RRELQLQGPRPTPLKIHKDSHKIKKPPVAPQPSQQPNQQQQPHHYQQPRQPVIIYTVSPK 69

Query: 64  IIHTDPTEFKDLVQRLTGCQPSSSSNDALDHPSHTTMSMPMIAN------STDQGMERVG 123
           +IHT+P+EF DLVQRLTG  PS+SS  +   PS+  ++ P   N        DQGM++  
Sbjct: 70  VIHTNPSEFMDLVQRLTGLPPSNSSTTSSSPPSNNNINPPNYDNYNNPPAHDDQGMKKAS 129

Query: 124 --------------------------------------HGILSPTPRLLPPISPNIFTPP 160
                                                  GILSP P  L PI  N F+PP
Sbjct: 130 TAQDVVEEMEIMDGGGGGGGDGDGDGDGDGGVRQRGMFPGILSPGPASLTPIPSNFFSPP 189

[Close]

BLAST of Cla013849 vs. NCBI nr
Match: gi|470108489|ref|XP_004290549.1| (PREDICTED: protein MKS1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 89/206 (43.20%), Postives = 107/206 (51.94%), Query Frame = 1


Query: 4   RKEVQLQGPRPAALKITKDSHKIKKPPL-----------PPPHRPVIIYTVSPKIIHTDP 63
           RKE+QLQGPRPA LKI KDSHKIKKPP+            PP +PVIIYTVSPKIIHT+P
Sbjct: 13  RKELQLQGPRPAPLKIHKDSHKIKKPPVVPQPSQANQPHQPPRQPVIIYTVSPKIIHTNP 72

Query: 64  TEFKDLVQRLTGCQPSSSS---------ND-----------------ALDHPSHTTMSMP 123
           ++F +LVQRLTG  PS+SS         ND                 + DH     M   
Sbjct: 73  SDFMNLVQRLTGLPPSNSSASCSSSSPRNDHQNTNGGGGESTMEQSRSSDHEGTMDMDDD 132

Query: 124 MIANSTDQGM----ERVGHGILSPTPRLLPPISPNIFTPPPQA-TTDLSPFAH----FFQ 161
                 D G+    + +  GILSP P  LPPI  N F+PP  +   DLSP  H    F +
Sbjct: 133 HDDRVHDTGLKLQQKGMFPGILSPAPGSLPPIPSNFFSPPADSFFHDLSPVLHGNRNFIE 192

The following BLAST results are available for this feature:

BLAST of Cla013849 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MKS1_ARATH	1.2e-13	33.88	Protein MKS1 OS=Arabidopsis thaliana GN=MKS1 PE=1 SV=2	[more]
NSRB_ARATH	3.5e-13	39.10	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana GN=NSRB PE=2 SV=1	[more]
VQ20_ARATH	5.7e-11	56.67	VQ motif-containing protein 20 OS=Arabidopsis thaliana GN=VQ20 PE=2 SV=1	[more]
VQ8_ARATH	2.6e-08	35.71	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana GN=VQ8 PE=2...	[more]

BLAST of Cla013849 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI80_CUCSA	1.2e-55	68.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G338080 PE=4 SV=1	[more]
M5VJC3_PRUPE	2.8e-25	41.83	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026048mg PE=4 SV=1	[more]
A0A151R6L2_CAJCA	1.1e-24	41.94	Protein MKS1 OS=Cajanus cajan GN=KK1_040566 PE=4 SV=1	[more]
A0A061FH83_THECC	1.4e-24	42.39	VQ motif-containing protein, putative OS=Theobroma cacao GN=TCM_035487 PE=4 SV=1	[more]
B9MZA0_POPTR	4.5e-23	40.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s05910g PE=4 SV=1	[more]

BLAST of Cla013849 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462192\|ref\|XP_004148825.1\|	1.7e-55	68.93	PREDICTED: protein MKS1-like [Cucumis sativus]	[more]
gi\|659082070\|ref\|XP_008441652.1\|	2.7e-53	68.39	PREDICTED: protein MKS1-like, partial [Cucumis melo]	[more]
gi\|657944194\|ref\|XP_008373255.1\|	2.8e-26	40.47	PREDICTED: protein MKS1 [Malus domestica]	[more]
gi\|694362603\|ref\|XP_009360755.1\|	4.0e-25	38.67	PREDICTED: protein MKS1-like [Pyrus x bretschneideri]	[more]
gi\|470108489\|ref\|XP_004290549.1\|	4.0e-25	43.20	PREDICTED: protein MKS1 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013849	Cla013849.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..67 score: 4.1
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 2..141 score: 6.2
None	No IPR available	PANTHER	PTHR33143:SF5	SUBFAMILY NOT NAMED	coord: 2..141 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013849	Cla97C08G149360	Watermelon (97103) v2	wmwmbB100
Cla013849	Csa6G338080	Cucumber (Chinese Long) v2	cuwmB468
Cla013849	MELO3C008398	Melon (DHL92) v3.5.1	mewmB309
Cla013849	ClCG08G006550	Watermelon (Charleston Gray)	wcgwmB400
Cla013849	CSPI06G18010	Wild cucumber (PI 183967)	cpiwmB483
Cla013849	Cucsa.077000	Cucumber (Gy14) v1	cgywmB082
Cla013849	CmaCh15G006170	Cucurbita maxima (Rimu)	cmawmB260
Cla013849	CmaCh04G024300	Cucurbita maxima (Rimu)	cmawmB666
Cla013849	CmoCh15G006210	Cucurbita moschata (Rifu)	cmowmB250
Cla013849	CmoCh04G025470	Cucurbita moschata (Rifu)	cmowmB661
Cla013849	Lsi08G005310	Bottle gourd (USVL1VR-Ls)	lsiwmB466
Cla013849	Cp4.1LG13g04200	Cucurbita pepo (Zucchini)	cpewmB170
Cla013849	Cp4.1LG01g21070	Cucurbita pepo (Zucchini)	cpewmB393
Cla013849	CsGy6G017490	Cucumber (Gy14) v2	cgybwmB439
Cla013849	MELO3C008398.2	Melon (DHL92) v3.6.1	medwmB301
Cla013849	Carg15779	Silver-seed gourd	carwmB0064
Cla013849	Carg01590	Silver-seed gourd	carwmB0824
Cla013849	CsaV3_6G030890	Cucumber (Chinese Long) v3	cucwmB494
Cla013849	Bhi04G001408	Wax gourd	wgowmB309

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013849	Cucurbita moschata (Rifu)	cmowmB009
Cla013849	Cucurbita pepo (Zucchini)	cpewmB757