Carg01590 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01590
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	protein MKS1-like
Location	Cucurbita_argyrosperma_scaffold_004 : 1814365 .. 1814856 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTCTCTTTGTTCTTCAACACCTAATGCCATGGCTGAAAGAAAAGAGCTTCAACTCCAAGGTCCCCGTCCCGCTGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATCCACCCAATACGACGATGATTATGAGTACCAATCATCAAGGAGCAGAGAGGGTAGGTCACGGAATATTATCGCCAACGCCAGGGTTGCTGCCGCCGATTCCAGCGAATATTTTCACTCCGACGCCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCAAATCGATTCTCGTCGTCGCTAGATTTCTTCCAAAACTTCCCTGATTTGCATAATTAA

mRNA sequence

ATGTCTTCTTCTCTTTGTTCTTCAACACCTAATGCCATGGCTGAAAGAAAAGAGCTTCAACTCCAAGGTCCCCGTCCCGCTGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATCCACCCAATACGACGATGATTATGAGTACCAATCATCAAGGAGCAGAGAGGGTAGGTCACGGAATATTATCGCCAACGCCAGGGTTGCTGCCGCCGATTCCAGCGAATATTTTCACTCCGACGCCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCAAATCGATTCTCGTCGTCGCTAGATTTCTTCCAAAACTTCCCTGATTTGCATAATTAA

Coding sequence (CDS)

ATGTCTTCTTCTCTTTGTTCTTCAACACCTAATGCCATGGCTGAAAGAAAAGAGCTTCAACTCCAAGGTCCCCGTCCCGCTGCCCTCAAGATCACCAAAGACTCCCACAAGATCGGCAAGCCGCCGCACCGGCCCGTCATCATCTACACCGTCTCCCCCAAGGTCATCCACACCGACCCTACTCAATTCAAGGACTTGGTCCAGCGTCTCACTGGCCACAAACCCTCCTCCCATGACTCTCACCATCCACCCAATACGACGATGATTATGAGTACCAATCATCAAGGAGCAGAGAGGGTAGGTCACGGAATATTATCGCCAACGCCAGGGTTGCTGCCGCCGATTCCAGCGAATATTTTCACTCCGACGCCGCCGCAGTCAGCTGAGCTCAGCCCTCTTACCCACTTTTTTCGGGATCTTAGCCCCATAGCTCCAAATCGATTCTCGTCGTCGCTAGATTTCTTCCAAAACTTCCCTGATTTGCATAATTAA

Protein sequence

MSSSLCSSTPNAMAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSPLTHFFRDLSPIAPNRFSSSLDFFQNFPDLHN

Homology

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_022939148.1 (protein MKS1-like [Cucurbita moschata])

HSP 1 Score: 306.2 bits (783), Expect = 6.6e-80
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHHPPNTTMIMSTNHQG ERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHPPNTTMIMSTNHQGTERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_023551504.1 (protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 304.3 bits (778), Expect = 2.5e-79
Identity = 147/150 (98.00%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKE+QLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHH PNTTMIMSTNHQGAERVGHGILSPTPGLLPPIP NIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHSPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPTNIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_022993351.1 (protein MKS1-like [Cucurbita maxima])

HSP 1 Score: 299.3 bits (765), Expect = 8.0e-78
Identity = 145/150 (96.67%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKPPHRPVIIYTVSPKVIHTDPTQFKDLVQRLTG 72
           MAERKE+QLQGPRPAALKITKDSHKIGKPPHRPVIIY+VSPKVIHTDPTQFKDLVQRLTG
Sbjct: 1   MAERKEVQLQGPRPAALKITKDSHKIGKPPHRPVIIYSVSPKVIHTDPTQFKDLVQRLTG 60

Query: 73  HKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 132
           HKPSSHDSHHPPNTTMIMSTN  GAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP
Sbjct: 61  HKPSSHDSHHPPNTTMIMSTNPHGAERVGHGILSPTPGLLPPIPANIFTPTPPQSAELSP 120

Query: 133 LTHFFRDLSPIAPNRFSSSLDFFQNFPDLH 163
           LTHFFRDLSPIAPNRFS SLDFFQNFPDLH
Sbjct: 121 LTHFFRDLSPIAPNRFSLSLDFFQNFPDLH 150

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_008441652.2 (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-42
Identity = 106/174 (60.92%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 15  ERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDLVQ 74
           ++++LQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPTQFKDLVQ
Sbjct: 35  KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 94

Query: 75  RLTGH--KPSSHDSH-----HPP------NTTMIMSTNHQGAER-VGHGILSPTPGLLPP 134
           RLTGH   PSS  +H     HPP        T  +     G +R + HGILSPTPGLLPP
Sbjct: 95  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 154

Query: 135 IPANIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           I   IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFF QNFPD H
Sbjct: 155 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

[Close]

BLAST of Carg01590 vs. NCBI nr
Match: XP_004148825.1 (PREDICTED: protein MKS1-like [Cucumis sativus] >KGN47476.1 hypothetical protein Csa_6G338080 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 4.6e-41
Identity = 106/178 (59.55%), Postives = 117/178 (65.73%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDL 72
           M E+KELQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 73  VQRLTGH--------------KPSSHDSHHPPNTTMIMSTNHQGAER-VGHGILSPTPGL 132
           VQRLTGH                     H    TT     +  G +R + HGILSPTPGL
Sbjct: 61  VQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 133 LPPIPANIFTPTPPQ------SAELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           LPPI + IF P PPQ      + +L+ LT FF DLSPIA N FSSSLDFF QNFPD H
Sbjct: 121 LPPISSTIFNP-PPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Carg01590 vs. TAIR10
Match: AT3G18690.1 (MAP kinase substrate 1)

HSP 1 Score: 74.7 bits (182), Expect = 5.8e-14
Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 15  ERKELQLQGPRPAALKITKDSHKIGKPPHR-----------------PVIIYTVSPKVIH 74
           ++++LQ+ GPRP+ L + KDSHKI KPP                   PV+IY VSPKV+H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAXXXXXXXXXXXXXXXPVVIYAVSPKVVH 77

Query: 75  TDPTQFKDLVQRLT--------------------------------GHKPSSHDSHHPPN 133
              ++F ++VQRLT                                G +P++ D     N
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

[Close]

BLAST of Carg01590 vs. TAIR10
Match: AT1G21326.1 (VQ motif-containing protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09
Identity = 67/231 (29.00%), Postives = 84/231 (36.36%), Query Frame = 0


Query: 23  GPRPAALKITKDSHKIGK-----PPHR--------------------PVIIYTVSPKVIH 82
           GPRP  LK+  DSHKI K     PPH                     PVIIYTVSP++IH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHXXXXXXXXXXXXXXXXXXXPGPVIIYTVSPRIIH 72

Query: 83  TDPTQFKDLVQRLTG-------HKPSSHDSHHPPNTTMIMSTNH---------------- 142
           T P  F  LVQRLTG                 P + + ++ T+H                
Sbjct: 73  THPNNFMTLVQRLTGKTSXXXXXXXXXXXXXXPKDASTMVDTSHGLISPAARFAVTEKAN 132

Query: 143 ----------------------------------QGAERVGH---GILSPTPGLLPPIPA 161
                                              G ER      GILSP P  LP +  
Sbjct: 133 ISNELGTFVGGEGTMDQYXXXXXXXXXXXXXXXXXGFERPSFHHAGILSPGPNSLPSVSP 192

[Close]

BLAST of Carg01590 vs. TAIR10
Match: AT3G18360.1 (VQ motif-containing protein)

HSP 1 Score: 55.5 bits (132), Expect = 3.7e-08
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 29  LKITKDSHKIGKP-----------PHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSS 80
           LK+ KDSH I KP           P  PVIIYT +P++IHT+P  F  LVQ+LTG   S 
Sbjct: 46  LKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSD 105

[Close]

BLAST of Carg01590 vs. TAIR10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding)

HSP 1 Score: 55.1 bits (131), Expect = 4.8e-08
Identity = 33/75 (44.00%), Postives = 38/75 (50.67%), Query Frame = 0


Query: 23 GPRPAALKITKDSHKIGK-----PPH--------------------RPVIIYTVSPKVIH 73
          GP+P  LK+  DSHKI K     PPH                     PV IYTV+P++IH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHXXXXXXXXXXXXXXXXXXXXXPVNIYTVTPRIIH 72

[Close]

BLAST of Carg01590 vs. TAIR10
Match: AT1G68450.1 (VQ motif-containing protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.3e-07
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 20 QLQGPRPAALKITKDSHKIGKP--------PH---RPVIIYTVSPKVIHTDPTQFKDLVQ 73
          ++ G RP++LK+  +SH I K         PH    PVIIY  SPKVIHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of Carg01590 vs. Swiss-Prot
Match: sp|Q8LGD5|MKS1_ARATH (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 56/169 (33.14%), Postives = 76/169 (44.97%), Query Frame = 0


Query: 15  ERKELQLQGPRPAALKITKDSHKIGKPPHR-----------------PVIIYTVSPKVIH 74
           ++++LQ+ GPRP+ L + KDSHKI KPP                   PV+IY VSPKV+H
Sbjct: 18  QKRQLQICGPRPSPLSVHKDSHKIKKPPKHPAXXXXXXXXXXXXXXXPVVIYAVSPKVVH 77

Query: 75  TDPTQFKDLVQRLT--------------------------------GHKPSSHDSHHPPN 133
              ++F ++VQRLT                                G +P++ D     N
Sbjct: 78  ATASEFMNVVQRLTGISSGVFLESGGGGDVSPAARLASTENASPRGGKEPAARDETVEIN 137

[Close]

BLAST of Carg01590 vs. Swiss-Prot
Match: sp|Q9LS54|VQ20_ARATH (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.6e-07
Identity = 30/62 (48.39%), Postives = 36/62 (58.06%), Query Frame = 0


Query: 29  LKITKDSHKIGKP-----------PHRPVIIYTVSPKVIHTDPTQFKDLVQRLTGHKPSS 80
           LK+ KDSH I KP           P  PVIIYT +P++IHT+P  F  LVQ+LTG   S 
Sbjct: 46  LKVNKDSHVIKKPPSPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSD 105

[Close]

BLAST of Carg01590 vs. Swiss-Prot
Match: sp|F4HWF9|NSRB_ARATH (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.6e-07
Identity = 33/75 (44.00%), Postives = 38/75 (50.67%), Query Frame = 0


Query: 23 GPRPAALKITKDSHKIGK-----PPH--------------------RPVIIYTVSPKVIH 73
          GP+P  LK+  DSHKI K     PPH                     PV IYTV+P++IH
Sbjct: 13 GPKPTPLKVRGDSHKIIKKPPLAPPHXXXXXXXXXXXXXXXXXXXXXPVNIYTVTPRIIH 72

[Close]

BLAST of Carg01590 vs. Swiss-Prot
Match: sp|Q9CA36|VQ8_ARATH (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 9.5e-06
Identity = 31/64 (48.44%), Postives = 37/64 (57.81%), Query Frame = 0


Query: 20 QLQGPRPAALKITKDSHKIGKP--------PH---RPVIIYTVSPKVIHTDPTQFKDLVQ 73
          ++ G RP++LK+  +SH I K         PH    PVIIY  SPKVIHT    F  LVQ
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRPHGRASPVIIYAHSPKVIHTRAEDFMALVQ 67

[Close]

BLAST of Carg01590 vs. TrEMBL
Match: tr|A0A1S3B4N1|A0A1S3B4N1_CUCME (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.6e-42
Identity = 106/174 (60.92%), Postives = 120/174 (68.97%), Query Frame = 0


Query: 15  ERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDLVQ 74
           ++++LQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPTQFKDLVQ
Sbjct: 35  KKRKLQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKDLVQ 94

Query: 75  RLTGH--KPSSHDSH-----HPP------NTTMIMSTNHQGAER-VGHGILSPTPGLLPP 134
           RLTGH   PSS  +H     HPP        T  +     G +R + HGILSPTPGLLPP
Sbjct: 95  RLTGHHQPPSSSSNHALVHDHPPPDPISIPITDAIDDQAGGVDRIIAHGILSPTPGLLPP 154

Query: 135 IPANIFTPTPPQSA-----ELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           I   IF+  PPQ+A     +L+ LT FF DLSPI  N FS SLDFF QNFPD H
Sbjct: 155 ISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

[Close]

BLAST of Carg01590 vs. TrEMBL
Match: tr|A0A0A0KI80|A0A0A0KI80_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-41
Identity = 106/178 (59.55%), Postives = 117/178 (65.73%), Query Frame = 0


Query: 13  MAERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFKDL 72
           M E+KELQLQGPRP+ALKITKDSHKI KP      PHRPVIIYTVSPK+IHTDPT+FKDL
Sbjct: 1   MPEKKELQLQGPRPSALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEFKDL 60

Query: 73  VQRLTGH--------------KPSSHDSHHPPNTTMIMSTNHQGAER-VGHGILSPTPGL 132
           VQRLTGH                     H    TT     +  G +R + HGILSPTPGL
Sbjct: 61  VQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPTPGL 120

Query: 133 LPPIPANIFTPTPPQ------SAELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 163
           LPPI + IF P PPQ      + +L+ LT FF DLSPIA N FSSSLDFF QNFPD H
Sbjct: 121 LPPISSTIFNP-PPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

[Close]

BLAST of Carg01590 vs. TrEMBL
Match: tr|A0A2I0W3R9|A0A2I0W3R9_9ASPA (Protein MKS1 OS=Dendrobium catenatum OX=906689 GN=MKS1 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 65/141 (46.10%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 11  NAMAERKELQLQGPRPAALKITKDSHKIGKP------PHRPVIIYTVSPKVIHTDPTQFK 70
           ++++ R+ELQLQGPRP+ L+++KDSHKI KP         PVIIYT+SPKVIH +P  F 
Sbjct: 3   HSLSHRRELQLQGPRPSPLRVSKDSHKITKPSPLPQQQREPVIIYTISPKVIHVEPANFM 62

Query: 71  DLVQRLTGHKPSSHDSHHPPNTTMIMSTNHQGAERVGHGILSPTPGLLPPIPANIFTPTP 130
            LVQRLTG   ++ D   PP T+   S   +    +  GIL P P  LPPIP   F+   
Sbjct: 63  GLVQRLTGPDRAAAD---PPTTS---SAAPERPVAIRPGILLPVPTSLPPIPPAFFS--- 122

Query: 131 PQSAELSPLTH-FFRDLSPIA 145
             S+ L P  H F  D+SP A
Sbjct: 123 --SSSLDPSFHSFLHDMSPAA 132

[Close]

BLAST of Carg01590 vs. TrEMBL
Match: tr|A0A2N9E868|A0A2N9E868_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3058 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-18
Identity = 75/191 (39.27%), Postives = 94/191 (49.21%), Query Frame = 0


Query: 7   SSTPNAMAERKELQLQGPRPAALKITKDSHKIGKPP-------------HRPVIIYTVSP 66
           S+     + ++ELQLQGPRPA L++ KDSHKI KPP               PVIIYTVSP
Sbjct: 4   SNISGGKSSKRELQLQGPRPAPLRVNKDSHKIKKPPLAPPHPSQPPVQLRPPVIIYTVSP 63

Query: 67  KVIHTDPTQFKDLVQRLTGHKPSS--------HDSHHPPNTTMI---------------- 126
           K+IHT P+ F  LVQRLTG   SS          S+   N+  I                
Sbjct: 64  KIIHTKPSDFMTLVQRLTGLSSSSXXXXXXXXXSSNPLINSGAISPAACYATIEKARDFP 123

Query: 127 ---------------MSTNHQGAERVG--HGILSPTPGLLPPIPANIFTPTPPQSAELSP 144
                          +  +HQG ER+G   GILSP P  LPPIP+N F+P     ++ SP
Sbjct: 124 EAKKQQVGEVGSVGGIEMDHQGVERMGPFPGILSPGPASLPPIPSNFFSP----PSDPSP 183

[Close]

BLAST of Carg01590 vs. TrEMBL
Match: tr|A0A151R6L2|A0A151R6L2_CAJCA (Protein MKS1 OS=Cajanus cajan OX=3821 GN=KK1_040566 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17
Identity = 74/188 (39.36%), Postives = 87/188 (46.28%), Query Frame = 0


Query: 10  PNAMAERKELQLQGPRPAALKITKDSHKIGKPP------------HRPVIIYTVSPKVIH 69
           P   + ++ELQLQGPRP  L+I KDSHKI KPP                IIYTVSPKVIH
Sbjct: 8   PTRRSPKRELQLQGPRPTPLRINKDSHKIKKPPVXXXXXXXXXXXXXXXIIYTVSPKVIH 67

Query: 70  TDPTQFKDLVQRLTGH---------------KPSSHDSHHPP-------------NTTMI 129
           T P+ F  LVQRLTG                 P + D  H P              TT  
Sbjct: 68  TTPSDFMSLVQRLTGXXXXXXXXXXXXXVATDPLTGDKGHIPVSPAARYAAIEMARTTQS 127

Query: 130 MSTNHQ-------GAERVG-------HGILSPTPGLLPPIPANIFTPTPPQSAELSPLTH 144
           +  N         G E VG       HGILSP P  L PIP+N F+   P S + + +  
Sbjct: 128 IKHNPSENSGDVGGVEIVGHERPNMFHGILSPGPASLSPIPSNFFS---PPSNDPNNMVS 187

The following BLAST results are available for this feature:

BLAST of Carg01590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939148.1	6.6e-80	98.67	protein MKS1-like [Cucurbita moschata]	[more]
XP_023551504.1	2.5e-79	98.00	protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like...	[more]
XP_022993351.1	8.0e-78	96.67	protein MKS1-like [Cucurbita maxima]	[more]
XP_008441652.2	2.4e-42	60.92	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
XP_004148825.1	4.6e-41	59.55	PREDICTED: protein MKS1-like [Cucumis sativus] >KGN47476.1 hypothetical protein ...	[more]

BLAST of Carg01590 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18690.1	5.8e-14	33.14	MAP kinase substrate 1	[more]
AT1G21326.1	1.9e-09	29.00	VQ motif-containing protein	[more]
AT3G18360.1	3.7e-08	48.39	VQ motif-containing protein	[more]
AT1G21320.1	4.8e-08	44.00	nucleotide binding;nucleic acid binding	[more]
AT1G68450.1	5.3e-07	48.44	VQ motif-containing protein	[more]

BLAST of Carg01590 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LGD5\|MKS1_ARATH	1.1e-12	33.14	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
sp\|Q9LS54\|VQ20_ARATH	6.6e-07	48.39	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
sp\|F4HWF9\|NSRB_ARATH	8.6e-07	44.00	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
sp\|Q9CA36\|VQ8_ARATH	9.5e-06	48.44	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Carg01590 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B4N1\|A0A1S3B4N1_CUCME	1.6e-42	60.92	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1	[more]
tr\|A0A0A0KI80\|A0A0A0KI80_CUCSA	3.0e-41	59.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1	[more]
tr\|A0A2I0W3R9\|A0A2I0W3R9_9ASPA	2.5e-19	46.10	Protein MKS1 OS=Dendrobium catenatum OX=906689 GN=MKS1 PE=4 SV=1	[more]
tr\|A0A2N9E868\|A0A2N9E868_FAGSY	1.6e-18	39.27	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3058 PE=4 SV=1	[more]
tr\|A0A151R6L2\|A0A151R6L2_CAJCA	1.8e-17	39.36	Protein MKS1 OS=Cajanus cajan OX=3821 GN=KK1_040566 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008889	VQ

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01590-RA	Carg01590-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 50..72 e-value: 2.8E-11 score: 42.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90
None	No IPR available	PANTHER	PTHR33143	FAMILY NOT NAMED	coord: 15..85 coord: 100..148
None	No IPR available	PANTHER	PTHR33143:SF26	F16F4.1 PROTEIN	coord: 15..85 coord: 100..148

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01590	Cla013849	Watermelon (97103) v1	carwmB0824
Carg01590	Csa6G338080	Cucumber (Chinese Long) v2	carcuB0852
Carg01590	MELO3C008398	Melon (DHL92) v3.5.1	carmeB0824
Carg01590	ClCG08G006550	Watermelon (Charleston Gray)	carwcgB0803
Carg01590	CSPI06G18010	Wild cucumber (PI 183967)	carcpiB0872
Carg01590	Cucsa.077000	Cucumber (Gy14) v1	carcgyB0944
Carg01590	CmaCh04G024300	Cucurbita maxima (Rimu)	carcmaB1150
Carg01590	CmaCh15G006170	Cucurbita maxima (Rimu)	carcmaB1148
Carg01590	CmoCh04G025470	Cucurbita moschata (Rifu)	carcmoB1121
Carg01590	CmoCh15G006210	Cucurbita moschata (Rifu)	carcmoB1118
Carg01590	Lsi08G005310	Bottle gourd (USVL1VR-Ls)	carlsiB758
Carg01590	Cp4.1LG13g04200	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01590	Cp4.1LG01g21070	Cucurbita pepo (Zucchini)	carcpeB1158
Carg01590	CsGy6G017490	Cucumber (Gy14) v2	carcgybB0826
Carg01590	MELO3C008398.2	Melon (DHL92) v3.6.1	carmedB0835
Carg01590	CsaV3_6G030890	Cucumber (Chinese Long) v3	carcucB0876
Carg01590	Cla97C08G149360	Watermelon (97103) v2	carwmbB0862
Carg01590	Bhi04G001408	Wax gourd	carwgoB0967

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01590	Carg15779	Silver-seed gourd	carcarB076

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01590	Cucumber (Gy14) v2	carcgybB0827
Carg01590	Cucumber (Gy14) v1	carcgyB0945
Carg01590	Cucurbita moschata (Rifu)	carcmoB1116
Carg01590	Cucurbita moschata (Rifu)	carcmoB1120
Carg01590	Cucurbita pepo (Zucchini)	carcpeB1161
Carg01590	Cucumber (Chinese Long) v2	carcuB0853
Carg01590	Cucumber (Chinese Long) v3	carcucB0877
Carg01590	Bottle gourd (USVL1VR-Ls)	carlsiB756
Carg01590	Watermelon (Charleston Gray)	carwcgB0798
Carg01590	Watermelon (97103) v1	carwmB0823
Carg01590	Watermelon (97103) v2	carwmbB0866