CsGy6G017490 (gene) Cucumber (Gy14) v2

NameCsGy6G017490
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionprotein MKS1-like
LocationChr6 : 18296969 .. 18297498 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCGCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAGTCTCCCCAAGATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCGCCCATTTCCTCCACTATTTTCAATCCCCCACCACAGGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

mRNA sequence

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCGCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCGCCCATTTCCTCCACTATTTTCAATCCCCCACCACAGGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

Coding sequence (CDS)

ATGCCTGAAAAAAAAGAGCTTCAACTCCAAGGCCCCGCCCTCCGCCCTCAAAATCACCAAAGATTCTCACAAGATCAAAAAGCCGCCGCTCCCCCACCGCAACCACACCGCCCCGTCATCATCTACACAATCATCCACACTGATCCTACCGAGTTCAAGGACTTGGTCCAACGTCTCACCGGCCATCATCAACCCCCCTCCTCCTCATCAAACCATGCCCTTGTTCATGACCACCATCCACCTCCAGATCATATCTCCATCCCCACTACAGATGACCCTATAGATGATCAAGCTGGTGTGGACAGGATTATTGCTCATGGGATATTATCGCCTACCCCGGGGTTGCTACCGCCCATTTCCTCCACTATTTTCAATCCCCCACCACAGGCCCCCGCCGCCGCCGCCGCCGGGGATCTCACCTCTCTTACACAATTTTTTCATGACCTTAGCCCCATAGCTGCCAATCATTTTTCTTCATCTTTAGATTTCTTCCAACAAAACTTCCCTGATTTTCATTAA

Protein sequence

MPEKKELQLQGPALRPQNHQRFSQDQKAAAPPPQPHRPVIIYTIIHTDPTEFKDLVQRLTGHHQPPSSSSNHALVHDHHPPPDHISIPTTDDPIDDQAGVDRIIAHGILSPTPGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH
BLAST of CsGy6G017490 vs. NCBI nr
Match: XP_004148825.1 (PREDICTED: protein MKS1-like [Cucumis sativus] >KGN47476.1 hypothetical protein Csa_6G338080 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 4.5e-63
Identity = 158/180 (87.78%), Postives = 163/180 (90.56%), Query Frame = 0

Query: 1   MPEKKELQLQGPALRPQNHQRFSQD----QKAAAPPPQPHRPVIIYT----IIHTDPTEF 60
           MPEKKELQLQGP  RP +  + ++D    +K   PPPQPHRPVIIYT    IIHTDPTEF
Sbjct: 1   MPEKKELQLQGP--RP-SALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEF 60

Query: 61  KDLVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPT 120
           KDLVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPT
Sbjct: 61  KDLVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPT 120

Query: 121 PGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 173
           PGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH
Sbjct: 121 PGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

BLAST of CsGy6G017490 vs. NCBI nr
Match: XP_008441652.2 (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 7.7e-47
Identity = 118/179 (65.92%), Postives = 128/179 (71.51%), Query Frame = 0

Query: 3   EKKELQLQGPALRPQNHQRFSQD----QKAAAPPPQPHRPVIIYT----IIHTDPTEFKD 62
           +K++LQLQGP  RP +  + ++D    +K   PPPQPHRPVIIYT    IIHTDPT+FKD
Sbjct: 35  KKRKLQLQGP--RP-SALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKD 94

Query: 63  LVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQA-GVDRIIAHGILSPTP 122
           LVQRLTGH                      ISIP T D IDDQA GVDRIIAHGILSPTP
Sbjct: 95  LVQRLTGHHQPPSSSSNHALVHDHPPPDP-ISIPIT-DAIDDQAGGVDRIIAHGILSPTP 154

Query: 123 GLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 173
           GLLPPIS TIF+ PP   AAAA GDLTSLTQFFHDLSPI ANHFS SLDFFQQNFPDFH
Sbjct: 155 GLLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

BLAST of CsGy6G017490 vs. NCBI nr
Match: XP_023551504.1 (protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.4 bits (337), Expect = 3.6e-28
Identity = 91/177 (51.41%), Postives = 103/177 (58.19%), Query Frame = 0

Query: 1   MPEKKELQLQGPALRPQNHQRFSQDQKAAAPPPQPHRPVIIYT----IIHTDPTEFKDLV 60
           M E+KE+QLQGP  RP   +      K   P   PHRPVIIYT    +IHTDPT+FKDLV
Sbjct: 1   MAERKEVQLQGP--RPAALKITKDSHKIGKP---PHRPVIIYTVSPKVIHTDPTQFKDLV 60

Query: 61  QRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPTPGLL 120
           QRLTGH                     H S  TT     +  G +R + HGILSPTPGLL
Sbjct: 61  QRLTGH--------------KPSSHDSHHSPNTTMIMSTNHQGAER-VGHGILSPTPGLL 120

Query: 121 PPISSTIFNP-PPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 173
           PPI + IF P PPQ      + +L+ LT FF DLSPIA N FSSSLDFF QNFPD H
Sbjct: 121 PPIPTNIFTPTPPQ------SAELSPLTHFFRDLSPIAPNRFSSSLDFF-QNFPDLH 150

BLAST of CsGy6G017490 vs. NCBI nr
Match: XP_022939148.1 (protein MKS1-like [Cucurbita moschata])

HSP 1 Score: 131.3 bits (329), Expect = 3.1e-27
Identity = 90/177 (50.85%), Postives = 101/177 (57.06%), Query Frame = 0

Query: 1   MPEKKELQLQGPALRPQNHQRFSQDQKAAAPPPQPHRPVIIYT----IIHTDPTEFKDLV 60
           M E+KELQLQGP  RP   +      K   P   PHRPVIIYT    +IHTDPT+FKDLV
Sbjct: 1   MAERKELQLQGP--RPAALKITKDSHKIGKP---PHRPVIIYTVSPKVIHTDPTQFKDLV 60

Query: 61  QRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPTPGLL 120
           QRLTGH                     H    TT     +  G +R + HGILSPTPGLL
Sbjct: 61  QRLTGH--------------KPSSHDSHHPPNTTMIMSTNHQGTER-VGHGILSPTPGLL 120

Query: 121 PPISSTIFNP-PPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 173
           PPI + IF P PPQ      + +L+ LT FF DLSPIA N FS SLDFF QNFPD H
Sbjct: 121 PPIPANIFTPTPPQ------SAELSPLTHFFRDLSPIAPNRFSLSLDFF-QNFPDLH 150

BLAST of CsGy6G017490 vs. NCBI nr
Match: XP_022993351.1 (protein MKS1-like [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 3.4e-26
Identity = 88/177 (49.72%), Postives = 101/177 (57.06%), Query Frame = 0

Query: 1   MPEKKELQLQGPALRPQNHQRFSQDQKAAAPPPQPHRPVIIYT----IIHTDPTEFKDLV 60
           M E+KE+QLQGP  RP   +      K   P   PHRPVIIY+    +IHTDPT+FKDLV
Sbjct: 1   MAERKEVQLQGP--RPAALKITKDSHKIGKP---PHRPVIIYSVSPKVIHTDPTQFKDLV 60

Query: 61  QRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPTPGLL 120
           QRLTGH                     H    TT     +  G +R + HGILSPTPGLL
Sbjct: 61  QRLTGH--------------KPSSHDSHHPPNTTMIMSTNPHGAER-VGHGILSPTPGLL 120

Query: 121 PPISSTIFNP-PPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 173
           PPI + IF P PPQ      + +L+ LT FF DLSPIA N FS SLDFF QNFPD H
Sbjct: 121 PPIPANIFTPTPPQ------SAELSPLTHFFRDLSPIAPNRFSLSLDFF-QNFPDLH 150

BLAST of CsGy6G017490 vs. TrEMBL
Match: tr|A0A0A0KI80|A0A0A0KI80_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 3.0e-63
Identity = 158/180 (87.78%), Postives = 163/180 (90.56%), Query Frame = 0

Query: 1   MPEKKELQLQGPALRPQNHQRFSQD----QKAAAPPPQPHRPVIIYT----IIHTDPTEF 60
           MPEKKELQLQGP  RP +  + ++D    +K   PPPQPHRPVIIYT    IIHTDPTEF
Sbjct: 1   MPEKKELQLQGP--RP-SALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTEF 60

Query: 61  KDLVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPT 120
           KDLVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPT
Sbjct: 61  KDLVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPT 120

Query: 121 PGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 173
           PGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH
Sbjct: 121 PGLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 177

BLAST of CsGy6G017490 vs. TrEMBL
Match: tr|A0A1S3B4N1|A0A1S3B4N1_CUCME (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 5.1e-47
Identity = 118/179 (65.92%), Postives = 128/179 (71.51%), Query Frame = 0

Query: 3   EKKELQLQGPALRPQNHQRFSQD----QKAAAPPPQPHRPVIIYT----IIHTDPTEFKD 62
           +K++LQLQGP  RP +  + ++D    +K   PPPQPHRPVIIYT    IIHTDPT+FKD
Sbjct: 35  KKRKLQLQGP--RP-SALKITKDSHKIKKPPLPPPQPHRPVIIYTVSPKIIHTDPTQFKD 94

Query: 63  LVQRLTGHXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQA-GVDRIIAHGILSPTP 122
           LVQRLTGH                      ISIP T D IDDQA GVDRIIAHGILSPTP
Sbjct: 95  LVQRLTGHHQPPSSSSNHALVHDHPPPDP-ISIPIT-DAIDDQAGGVDRIIAHGILSPTP 154

Query: 123 GLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPIAANHFSSSLDFFQQNFPDFH 173
           GLLPPIS TIF+ PP   AAAA GDLTSLTQFFHDLSPI ANHFS SLDFFQQNFPDFH
Sbjct: 155 GLLPPISPTIFSTPPPQAAAAATGDLTSLTQFFHDLSPIPANHFSPSLDFFQQNFPDFH 208

BLAST of CsGy6G017490 vs. TrEMBL
Match: tr|A0A2I0X5S5|A0A2I0X5S5_9ASPA (Protein MKS1 OS=Dendrobium catenatum OX=906689 GN=MKS1 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.0e-07
Identity = 55/159 (34.59%), Postives = 64/159 (40.25%), Query Frame = 0

Query: 4   KKELQLQGPALRPQNHQRFSQDQKAAAPPPQPHRPVIIYTI----IHTDPTEFKDLVQRL 63
           +++LQLQGP  RP   +      K   PPP P  PVIIYTI    IH D  +F  LVQRL
Sbjct: 15  RRQLQLQGP--RPAPLRLSKDSHKIRKPPPAPRDPVIIYTISPKVIHVDLADFMGLVQRL 74

Query: 64  TG------HXXXXXXXXXXXXXXXXXXXXXHISIPTTDDPIDDQAGVDRIIAHGILSPTP 123
           TG                             I  P   D +D           GILSP P
Sbjct: 75  TGPENAGPADQPFSPAAKLATIQNATVQARPIHRPADVDDLDQLVMSRPTPNPGILSPVP 134

Query: 124 GLLPPISSTIFNPPPQAPAAAAAGDLTSLTQFFHDLSPI 153
             LPP+S   F+P    P         S   F HDLSP+
Sbjct: 135 ASLPPVSPCFFSPSYLEP---------SFLNFLHDLSPV 162

BLAST of CsGy6G017490 vs. TrEMBL
Match: tr|A0A151TGT1|A0A151TGT1_CAJCA (Protein MKS1 OS=Cajanus cajan OX=3821 GN=KK1_012548 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 74/195 (37.95%), Postives = 91/195 (46.67%), Query Frame = 0

Query: 4   KKELQLQGPALRPQNHQRFSQDQK-------AAAPPPQPHRPVIIYT----IIHTDPTEF 63
           ++ELQLQGP   P    + S   K       A+ P P P +P+IIYT    +IHT P +F
Sbjct: 15  RRELQLQGPRPTPLRINKDSHKIKKPPLPPQASHPQPPPRQPIIIYTVSPKVIHTTPGDF 74

Query: 64  KDLVQRLTGHXXXXXXXXXXXXXXXXXXXXXH------------------------ISIP 123
            +LVQRLTG XXXXXXXXXXXXXXXXX                             ++IP
Sbjct: 75  MNLVQRLTGXXXXXXXXXXXXXXXXXXPFNAGGVVSPAARYATIEKAMSPMGKKQLVNIP 134

Query: 124 TTDDPIDDQAGVDRIIAH-----------GILSPTPGLLPPISSTIFNPPPQAPAAAAAG 153
           +     +     D I+ H           GILSP P  L PI S  F+PP   P      
Sbjct: 135 SGGANSNSNIISDEIMGHAVVERSQNMFQGILSPGPASLSPIPSNFFSPPSSDP------ 194

BLAST of CsGy6G017490 vs. TrEMBL
Match: tr|A0A0R0KIU2|A0A0R0KIU2_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G239400 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 62/213 (29.11%), Postives = 82/213 (38.50%), Query Frame = 0

Query: 4   KKELQLQGPALRPQNHQRFSQDQKAAAPP-----------PQPHRPVIIYT----IIHTD 63
           ++ELQLQGP  RP   +      K   PP           P P +P+IIYT    +IHT 
Sbjct: 34  RRELQLQGP--RPTPLRINKDSHKIKKPPLAPQQPSHPHQPPPRQPIIIYTVSPKVIHTT 93

Query: 64  PTEFKDLVQRLTGH------------------------XXXXXXXXXXXXXXXXXXXXXH 123
           P++F +LVQRLTG                                              H
Sbjct: 94  PSDFMNLVQRLTGXXXXXXXXXXXXXXXHVDPFNNGAGMLSPAARYATIEKAMSPMGKKH 153

Query: 124 ISIPTTDDPIDDQAGVDRIIA------------HGILSPTPGLLPPISSTIFNPPPQAPA 166
           + +P+ D+ I D  G++  I              GILSP P  L PI S  F+PP   P 
Sbjct: 154 V-LPSGDNIISDVQGIEINIGDGVLERSQQNMFQGILSPGPASLSPIPSNFFSPPSSDP- 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004148825.14.5e-6387.78PREDICTED: protein MKS1-like [Cucumis sativus] >KGN47476.1 hypothetical protein ... [more]
XP_008441652.27.7e-4765.92PREDICTED: protein MKS1-like [Cucumis melo][more]
XP_023551504.13.6e-2851.41protein MKS1-like [Cucurbita pepo subsp. pepo] >XP_023551505.1 protein MKS1-like... [more]
XP_022939148.13.1e-2750.85protein MKS1-like [Cucurbita moschata][more]
XP_022993351.13.4e-2649.72protein MKS1-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KI80|A0A0A0KI80_CUCSA3.0e-6387.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338080 PE=4 SV=1[more]
tr|A0A1S3B4N1|A0A1S3B4N1_CUCME5.1e-4765.92protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103485735 PE=4 SV=1[more]
tr|A0A2I0X5S5|A0A2I0X5S5_9ASPA3.0e-0734.59Protein MKS1 OS=Dendrobium catenatum OX=906689 GN=MKS1 PE=4 SV=1[more]
tr|A0A151TGT1|A0A151TGT1_CAJCA5.7e-0637.95Protein MKS1 OS=Cajanus cajan OX=3821 GN=KK1_012548 PE=4 SV=1[more]
tr|A0A0R0KIU2|A0A0R0KIU2_SOYBN1.3e-0529.11Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_04G239400 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G017490.1CsGy6G017490.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 43..66
e-value: 1.1E-9
score: 37.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..86
NoneNo IPR availablePANTHERPTHR33143:SF26F16F4.1 PROTEINcoord: 27..72
NoneNo IPR availablePANTHERPTHR33143FAMILY NOT NAMEDcoord: 27..72