Cp4.1LG18g06670 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG18g06670
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Ribosomal protein L19
Location	Cp4.1LG18 : 6782460 .. 6783736 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAATAACATCATTACTTTGGGCCCAAGGAAAACACTACAATTTTCAAGCCTTTTTGTATGGTCAAACAAACAAAAGGAATATGGAAGACGAGAGGAAGGCATAATCCTTGCATCCCAAGTAACACATGACCGACCACCTAGCATTCCACTTCTATATTAGAGCTTTCAAATTTCATATAGAAATAAATCCACTAGTTTACCTCACGCTCTTCCAAGTTTAGCAGTGTTCTTTTTGGATTACCCATCAAGAAGAACCCTTTCAGTGCACAACAGAGAAGAAACCACCACAAGCAGCCCCAACAATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCAAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGTAAGTACAACAACTTTCCAAGAACTATCATCTGATTTTTTTCTTCCTGTTGAACTTGATCAGTCATGAAGTTTGCTTATGAGTGCACAACCATGTTTAAGAGAGGAGAGAAGAAAAGAAAAGGTTTGGCGAACATGACATATACAGATTTAACAAAAGAGTGAACAATGAATTCTTTTGTTTCAGGAAAGAATTTTGTACCTGATTATTAACAATTTATCAAAGATGCAAAAGAAAAACATTTTAACTAGAAAACACATGTAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTGATCATCAAGAGGATGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAATAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAAAACTGTTGATTAGAACATAAGTGCATAATTGTCCTTTTATTTTTGCAAGATCAGATGTATTTGTATATTTGTCACCAGTTCTATAT

mRNA sequence

AATAAATAACATCATTACTTTGGGCCCAAGGAAAACACTACAATTTTCAAGCCTTTTTGTATGGTCAAACAAACAAAAGGAATATGGAAGACGAGAGGAAGGCATAATCCTTGCATCCCAAGTAACACATGACCGACCACCTAGCATTCCACTTCTATATTAGAGCTTTCAAATTTCATATAGAAATAAATCCACTAGTTTACCTCACGCTCTTCCAAGTTTAGCAGTGTTCTTTTTGGATTACCCATCAAGAAGAACCCTTTCAGTGCACAACAGAGAAGAAACCACCACAAGCAGCCCCAACAATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCAAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTGATCATCAAGAGGATGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAATAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAAAACTGTTGATTAGAACATAAGTGCATAATTGTCCTTTTATTTTTGCAAGATCAGATGTATTTGTATATTTGTCACCAGTTCTATAT

Coding sequence (CDS)

ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCAAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTGATCATCAAGAGGATGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAATAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSKFRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYTAITGSGSDKIHTFRECLSYGVEAS

Homology

[Close]

BLAST of Cp4.1LG18g06670 vs. Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 233.0 bits (593), Expect = 2.9e-60
Identity = 123/188 (65.43%), Postives = 151/188 (80.32%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+RQ + AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Cp4.1LG18g06670 vs. Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.9e-60
Identity = 123/188 (65.43%), Postives = 150/188 (79.79%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+   AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY RVKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Cp4.1LG18g06670 vs. Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-58
Identity = 118/192 (61.46%), Postives = 150/192 (78.12%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R  +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK+K+E A E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 AITGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]

BLAST of Cp4.1LG18g06670 vs. Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.4e-51
Identity = 103/169 (60.95%), Postives = 136/169 (80.47%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDGLIIK+  T+HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R R++  A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKA 170
           H +Y R KGNV+KNKR+LME+IHK+K++ A ++ LS Q EA+R++  +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREA 169

[Close]

BLAST of Cp4.1LG18g06670 vs. Swiss-Prot
Match: RL19_TETTS (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) GN=RPL19 PE=1 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.2e-51
Identity = 107/167 (64.07%), Postives = 133/167 (79.64%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLAAS L CG++R+WLDPNE+  IS+ANSR SIRKLIKDGL++KR T IHS+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R   EAK +GRH+G GKR+GT+ AR+PTK+LWMRR RVLRRLLRKYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNS 168
           H+ Y   KGN+YKNK VL+E IH  K++      L++Q EA+RA+N+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNT 167

[Close]

BLAST of Cp4.1LG18g06670 vs. TrEMBL
Match: A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.3e-71
Identity = 148/171 (86.55%), Postives = 158/171 (92.40%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ET TISLANSRMSIRKLIKDGLIIKR+TT HSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ H+AKSRGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKV +E A E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of Cp4.1LG18g06670 vs. TrEMBL
Match: A0A061DYW5_THECC (Ribosomal protein L19 OS=Theobroma cacao GN=TCM_004725 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.9e-60
Identity = 125/189 (66.14%), Postives = 152/189 (80.42%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRL+AS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGSDK 190
              G G DK
Sbjct: 181 LAQGPGGDK 189

[Close]

BLAST of Cp4.1LG18g06670 vs. TrEMBL
Match: A0A164YYZ1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018315 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.9e-60
Identity = 125/186 (67.20%), Postives = 151/186 (81.18%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLA+S L CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKGKVWLDPNESNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +GRH+GYGKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHAGYGKRRGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNVYKNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +    + ++D  
Sbjct: 121 HDMYMKVKGNVYKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARRDER 180

Query: 181 AITGSG 187
              G G
Sbjct: 181 LAKGPG 186

[Close]

BLAST of Cp4.1LG18g06670 vs. TrEMBL
Match: A0A0K9QY52_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127810 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.9e-60
Identity = 123/178 (69.10%), Postives = 150/178 (84.27%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRL+AS L CGK++ WLDPNET  IS+ANSR +IRKLIKDG IIK+ + IHS+
Sbjct: 1   MVSLKLQKRLSASVLKCGKKKTWLDPNETNEISMANSRQNIRKLIKDGFIIKKPSNIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMNEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKD 179
           H MY +VKGNV+KNKRVLMENIHK K+E A E+TLS Q EA+RA+N  +    + ++D
Sbjct: 121 HDMYMKVKGNVFKNKRVLMENIHKSKAEKAREKTLSDQFEARRAKNKASRERKIARRD 178

[Close]

BLAST of Cp4.1LG18g06670 vs. TrEMBL
Match: A0A068V9R7_COFCA (Ribosomal protein L19 OS=Coffea canephora GN=GSCOC_T00000698001 PE=3 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.3e-59
Identity = 124/187 (66.31%), Postives = 151/187 (80.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGS 188
              G G+
Sbjct: 181 LAQGPGA 187

[Close]

BLAST of Cp4.1LG18g06670 vs. TAIR10
Match: AT4G02230.1 (AT4G02230.1 Ribosomal protein L19e family protein)

HSP 1 Score: 233.0 bits (593), Expect = 1.6e-61
Identity = 123/188 (65.43%), Postives = 151/188 (80.32%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+RQ + AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Cp4.1LG18g06670 vs. TAIR10
Match: AT1G02780.1 (AT1G02780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-61
Identity = 123/188 (65.43%), Postives = 150/188 (79.79%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+   AK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY RVKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Cp4.1LG18g06670 vs. TAIR10
Match: AT3G16780.1 (AT3G16780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-59
Identity = 118/192 (61.46%), Postives = 150/192 (78.12%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R  +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK+K+E A E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 AITGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]

BLAST of Cp4.1LG18g06670 vs. TAIR10
Match: AT4G16030.1 (AT4G16030.1 Ribosomal protein L19e family protein)

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-10
Identity = 48/118 (40.68%), Postives = 72/118 (61.02%), Query Frame = 1


Query: 54  MTTIHSKFRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECE 113
           M +IH   RSR    A+ + RH+GYGK       R+  +L   RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSR----ARRKCRHTGYGKDTMEALRRIMKRLT--RRLKMLKRLLKKFCWNK 60

Query: 114 KIDKHIY-HQMYTRVKGNVYKNKRVLMENIHKVKSE---IASERTLSAQVEAKRARNS 168
           KIDK +Y H M+ +VKG VYKNK VLME++HK   E     SE  L+ + E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of Cp4.1LG18g06670 vs. NCBI nr
Match: gi|659107003|ref|XP_008453495.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 282.0 bits (720), Expect = 8.5e-73
Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNET TISLANSRMSIRKLIKDGLIIKR+TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ H+AKSRGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKVK+E A E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of Cp4.1LG18g06670 vs. NCBI nr
Match: gi|449439153|ref|XP_004137352.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus])

HSP 1 Score: 275.8 bits (704), Expect = 6.1e-71
Identity = 148/171 (86.55%), Postives = 158/171 (92.40%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ET TISLANSRMSIRKLIKDGLIIKR+TT HSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ H+AKSRGRHSG GKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKV +E A E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of Cp4.1LG18g06670 vs. NCBI nr
Match: gi|729454118|ref|XP_010523961.1| (PREDICTED: 60S ribosomal protein L19-3 [Tarenaya hassleriana])

HSP 1 Score: 241.1 bits (614), Expect = 1.7e-60
Identity = 127/192 (66.15%), Postives = 153/192 (79.69%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKMARREER 180

Query: 181 AITGSGSDKIHT 193
              G G DK  T
Sbjct: 181 LAQGPGGDKAAT 192

[Close]

BLAST of Cp4.1LG18g06670 vs. NCBI nr
Match: gi|729414432|ref|XP_010556721.1| (PREDICTED: 60S ribosomal protein L19-3-like [Tarenaya hassleriana])

HSP 1 Score: 238.8 bits (608), Expect = 8.3e-60
Identity = 125/188 (66.49%), Postives = 151/188 (80.32%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of Cp4.1LG18g06670 vs. NCBI nr
Match: gi|729355800|ref|XP_010544991.1| (PREDICTED: 60S ribosomal protein L19-1-like [Tarenaya hassleriana])

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-59
Identity = 125/189 (66.14%), Postives = 151/189 (79.89%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+E A E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGSDK 190
              G   DK
Sbjct: 181 LAMGPAGDK 189

The following BLAST results are available for this feature:

BLAST of Cp4.1LG18g06670 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL193_ARATH	2.9e-60	65.43	60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3	[more]
RL191_ARATH	4.9e-60	65.43	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1	[more]
RL192_ARATH	2.7e-58	61.46	60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	[more]
RL19_ICTPU	2.4e-51	60.95	60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	[more]
RL19_TETTS	3.2e-51	64.07	60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) GN=RPL19 PE=...	[more]

BLAST of Cp4.1LG18g06670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8_CUCSA	4.3e-71	86.55	Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1	[more]
A0A061DYW5_THECC	9.9e-60	66.14	Ribosomal protein L19 OS=Theobroma cacao GN=TCM_004725 PE=3 SV=1	[more]
A0A164YYZ1_DAUCA	9.9e-60	67.20	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018315 PE=4 SV=1	[more]
A0A0K9QY52_SPIOL	9.9e-60	69.10	Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127810 PE=3 SV=1	[more]
A0A068V9R7_COFCA	1.3e-59	66.31	Ribosomal protein L19 OS=Coffea canephora GN=GSCOC_T00000698001 PE=3 SV=1	[more]

BLAST of Cp4.1LG18g06670 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02230.1	1.6e-61	65.43	Ribosomal protein L19e family protein	[more]
AT1G02780.1	2.7e-61	65.43	Ribosomal protein L19e family protein	[more]
AT3G16780.1	1.5e-59	61.46	Ribosomal protein L19e family protein	[more]
AT4G16030.1	4.9e-10	40.68	Ribosomal protein L19e family protein	[more]

BLAST of Cp4.1LG18g06670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107003\|ref\|XP_008453495.1\|	8.5e-73	88.30	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
gi\|449439153\|ref\|XP_004137352.1\|	6.1e-71	86.55	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus]	[more]
gi\|729454118\|ref\|XP_010523961.1\|	1.7e-60	66.15	PREDICTED: 60S ribosomal protein L19-3 [Tarenaya hassleriana]	[more]
gi\|729414432\|ref\|XP_010556721.1\|	8.3e-60	66.49	PREDICTED: 60S ribosomal protein L19-3-like [Tarenaya hassleriana]	[more]
gi\|729355800\|ref\|XP_010544991.1\|	1.1e-59	66.14	PREDICTED: 60S ribosomal protein L19-1-like [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023638	Ribosomal_L19/L19e_CS
IPR015974	Ribosomal protein L19/L19e, domain 3
IPR015972	Ribosomal_L19/L19e_dom1
IPR000196	Ribosomal_L19/L19e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0042788	polysomal ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG18g06670.1	Cp4.1LG18g06670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e domain	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 score: 3.0
IPR000196	Ribosomal protein L19/L19e domain	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 score: 3.8
IPR000196	Ribosomal protein L19/L19e domain	unknown	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144 score: 7.59
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..54 score: 4.8
IPR015974	Ribosomal protein L19/L19e, domain 3	GENE3D	G3DSA:1.10.1200.60		coord: 90..148 score: 1.4
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26 scor
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..166 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG18g06670	Cucsa.111630	Cucumber (Gy14) v1	cgycpeB0253
Cp4.1LG18g06670	CmaCh10G003330	Cucurbita maxima (Rimu)	cmacpeB080
Cp4.1LG18g06670	CmoCh10G003590	Cucurbita moschata (Rifu)	cmocpeB055
Cp4.1LG18g06670	Cla018917	Watermelon (97103) v1	cpewmB372
Cp4.1LG18g06670	Csa1G025150	Cucumber (Chinese Long) v2	cpecuB363
Cp4.1LG18g06670	MELO3C017364	Melon (DHL92) v3.5.1	cpemeB330
Cp4.1LG18g06670	ClCG06G014250	Watermelon (Charleston Gray)	cpewcgB335
Cp4.1LG18g06670	CSPI01G04420	Wild cucumber (PI 183967)	cpecpiB363
Cp4.1LG18g06670	Lsi06G012730	Bottle gourd (USVL1VR-Ls)	cpelsiB301
Cp4.1LG18g06670	MELO3C017364.2	Melon (DHL92) v3.6.1	cpemedB388
Cp4.1LG18g06670	CsaV3_1G004430	Cucumber (Chinese Long) v3	cpecucB0444
Cp4.1LG18g06670	Bhi02G000109	Wax gourd	cpewgoB0467
Cp4.1LG18g06670	CsGy1G004340	Cucumber (Gy14) v2	cgybcpeB055
Cp4.1LG18g06670	Carg15182	Silver-seed gourd	carcpeB1103

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cpecpeB360
Cp4.1LG18g06670	Cucurbita maxima (Rimu)	cmacpeB132
Cp4.1LG18g06670	Cucurbita moschata (Rifu)	cmocpeB108
Cp4.1LG18g06670	Silver-seed gourd	carcpeB0843