CSPI01G04420 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G04420
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Ribosomal protein L19
Location	Chr1 : 2763012 .. 2765838 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCCCCAAGGAAACACTTAAAATTTTCAAGCCCTGTTTGAATGGTCAAAGAAACAAAGGGGGGAAGAATATGGAAGAAACGAAGAAGGCATAATCCTTGCATTCCAAGTAACACAAAACCAAGCAATAGACGTTTTACTTTCTATATAAAACCTTTCAAATTTGTTTTCATATAGAAAGCACTTGCCAATTAGCTCACCTCAAGCTCTTTCAAGTTTGCATTCTTTTGGTTCAGTGTAGAGAAGAAGCCACCACAAGCAGAACCAGCAATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGTAAGCACTTCAACTTTATCTAGAATTGTTGCATCTTCTCTTTTCTTTCTCTTCGTGTTAACTTGAAGAGTCATGAAGTTTAGTTGTAAGTACATAACCATTTAAAGAGAACAGTGAGAAAATAAAAAGGCAGGTTTGATCAGTCATCATTTTGGTGTTTGATGTTGAATATTATTGATTTTAGAAAATTCTAAAAACATTTTAAAATTGCGTTTTCTGTTGAAGTGCTAGATGAATGTTTTGAAATATTTATTATAAACGTTTTCTTACATACATATCAATCATACATATAAAATTTTCATAATAAAAAAATTGGAGAAAAAGTATAGTTATCACAATTATTTAGTTAAATAAGTTCTCAGATAGAAACTTCCATTTGATACTATTTTTGTTTTCAAAAAATAAACCTATAGACAATACTTTCCGTCTCTCTCTTTCTTCCTTTGTTATCTATAATAAATATTACCAAAATATCTTCCTTTGCTATCTATATTAAATATTACCAATTGTTTAAAAAACCAAGCCAAAACTTGATACTAAAAAAAAAGTAACTTTTTGCTTTTGAAATTTAGCTAGGAATTCAACCACACAAAGAGGATATAGGCTTAGTTTTGAAAAACAAAAACAAATAACAAAATAGTTACAAACTAGACCTTACTGATTCCATAATTCTAAACTCGTTTTTAAAACCAAACATAACAACTCAAGATCATATTTAAATATATAAAAATCACTTTTAAGGGCTTGAAACCAAACATTAATATGATTATATAAAAATCAATAATCTTTTTTCTAAAATCATATTTCAATCATCACTCCCAAAACATACCCTTAGAATAATTGATTCCACTGGATGCAGATTTCACACAAGAGTGGGCAATTAAATCTTTAGTTTCAGAAAAGAATTTTGTACCCCTGATATTAACAATTCAAGTAGCAAAATCTTTTCTAAGAGAACAAGGATATTTTAACTAAAAAGCATATGTAACTATCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGAAGCAGAAAGATTACTCTACCATTAAGGCTCTGGCTGTGACATAATTCACACATTCAGGGTCTGTCTTCCTCATAGCCATATAGGGGAAGCTCAATAAAACAAATGGTTAGATAAAAACTGTATAATCGTCCATTAATATTTTTCAACTTCATATGTATTTGTATGTTTCACATGAGTTTTATGATGACAAATCTAACAGAGTGAACAGTAATTGGTACCTACAGATATTCAATGATGAGAACCTATGCTTTAAACAGCATTCATGTGCAATGAAAAGGATATAACATCCTATTTAGAACCTCATTTTCAGATATTTGGCCAATAGATGGTTAGCAGGTTTTACAATATGAAAATGGAACAGTGCTTTCTTGATTGTTCCATCCAAGGGAATGTTTTACACGTTACCCAACTGAATGAAGAATAACATCCATTCCAAATGCAAGCTTCCTCATGAAGGACGATCAGAGTTCAAAATACCTTCACTTCGCTGCATAAAAAGGCTACAAGGCAAACCATTATCACATAATGGAATTGGAAACAACCAAAACACATTCTAAAGAAGCCAATAGGACTCCCCAACTTCTAACTGAGGGATAAGGAAGGACATTTCTGATTCCCATCCTCCGGGAGACCTCCCCTTGCCACCCTCTTAATTTCTTTGGTCCGAGCTCTGGTCTGGTAATGGTATTTCCTTCTCCCAGATTTCACAACCCTGCAATGGTGGATGCCTGTGGTTGACAAAATTTGCGCTCAATCATTTCAATTAACCATGAAACGATCAATCATTTTTATTTGGCCATTCTCTAGGCAGTTCAGCATAAAAGTAAAGAAAGAAATGAGGTTCTCAAAGCTCACCCATTATCCTTTCTAGTCGTGATATTCCATATAATGCAAAACAATCACATTACTGTTCTTAAGGTAGAAAATGTTAACAAATAGAGCGAAAAGACAATAGATTTCAACAGATTATAGGATCCCATAACATATGCAAACTCATCTAACACAATTAGGCTAGTAATTCTTGGAAAGCATAGTAAATTG

mRNA sequence

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Coding sequence (CDS)

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Homology

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BLAST of CSPI01G04420 vs. Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 228.8 bits (582), Expect = 4.6e-59
Identity = 122/166 (73.49%), Postives = 145/166 (87.35%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

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BLAST of CSPI01G04420 vs. Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.9e-58
Identity = 120/166 (72.29%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

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BLAST of CSPI01G04420 vs. Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 9.6e-57
Identity = 116/166 (69.88%), Postives = 142/166 (85.54%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

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BLAST of CSPI01G04420 vs. Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.3e-50
Identity = 104/169 (61.54%), Postives = 135/169 (79.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR +IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+KA++A +K LS Q EA+R+   +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREA 169

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BLAST of CSPI01G04420 vs. Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 2.3e-50
Identity = 104/169 (61.54%), Postives = 133/169 (78.70%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR  IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+KA+KA +K L+ Q EA+R    +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREA 169

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BLAST of CSPI01G04420 vs. TrEMBL
Match: A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 8.4e-84
Identity = 172/173 (99.42%), Postives = 172/173 (99.42%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

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BLAST of CSPI01G04420 vs. TrEMBL
Match: A0A0D9Z714_9ORYZ (Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-57
Identity = 124/169 (73.37%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK KAEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of CSPI01G04420 vs. TrEMBL
Match: A0A0E0NUR6_ORYRU (Ribosomal protein L19 OS=Oryza rufipogon PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-57
Identity = 124/169 (73.37%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK KAEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of CSPI01G04420 vs. TrEMBL
Match: Q10LR6_ORYSJ (Ribosomal protein L19 OS=Oryza sativa subsp. japonica GN=Os03g0337800 PE=2 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-57
Identity = 124/169 (73.37%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK KAEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of CSPI01G04420 vs. TrEMBL
Match: A0A0E0GM45_ORYNI (Ribosomal protein L19 OS=Oryza nivara PE=3 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.3e-57
Identity = 124/169 (73.37%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK KAEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of CSPI01G04420 vs. TAIR10
Match: AT4G02230.1 (AT4G02230.1 Ribosomal protein L19e family protein)

HSP 1 Score: 228.8 bits (582), Expect = 2.6e-60
Identity = 122/166 (73.49%), Postives = 145/166 (87.35%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CSPI01G04420 vs. TAIR10
Match: AT1G02780.1 (AT1G02780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 225.7 bits (574), Expect = 2.2e-59
Identity = 120/166 (72.29%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CSPI01G04420 vs. TAIR10
Match: AT3G16780.1 (AT3G16780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 221.1 bits (562), Expect = 5.4e-58
Identity = 116/166 (69.88%), Postives = 142/166 (85.54%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of CSPI01G04420 vs. TAIR10
Match: AT4G16030.1 (AT4G16030.1 Ribosomal protein L19e family protein)

HSP 1 Score: 57.8 bits (138), Expect = 7.9e-09
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 1


Query: 54  LTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYE 113
           + + H  SRSR R +     RH+G GK       R+  +L   RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSRARRKC----RHTGYGKDTMEALRRIMKRLT--RRLKMLKRLLKKFCWNK 60

Query: 114 KIDRHIY-HQMYIRVKGNVYKNKRVLMESIHKVKAEKAL---EKTLSIQVEAKRAINS 168
           KID+ +Y H M+++VKG VYKNK VLMES+HK   E+     E  L+++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of CSPI01G04420 vs. NCBI nr
Match: gi|449439153|ref|XP_004137352.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus])

HSP 1 Score: 317.8 bits (813), Expect = 1.2e-83
Identity = 172/173 (99.42%), Postives = 172/173 (99.42%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CSPI01G04420 vs. NCBI nr
Match: gi|659107003|ref|XP_008453495.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.0e-82
Identity = 170/173 (98.27%), Postives = 172/173 (99.42%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVK EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CSPI01G04420 vs. NCBI nr
Match: gi|727419957|ref|XP_010429437.1| (PREDICTED: 60S ribosomal protein L19-3-like [Camelina sativa])

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-57
Identity = 123/166 (74.10%), Postives = 145/166 (87.35%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRL+AS L CGK++VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLSASVLKCGKKKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRD +KIDRH+Y
Sbjct: 61  SRARQLNVAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRDTKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNVYKNKRVLMESIHK KAEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVYKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CSPI01G04420 vs. NCBI nr
Match: gi|1002256594|ref|XP_015632604.1| (PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group])

HSP 1 Score: 229.9 bits (585), Expect = 3.3e-57
Identity = 124/169 (73.37%), Postives = 145/169 (85.80%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK KAEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of CSPI01G04420 vs. NCBI nr
Match: gi|527205415|gb|EPS71288.1| (hypothetical protein M569_03471, partial [Genlisea aurea])

HSP 1 Score: 229.9 bits (585), Expect = 3.3e-57
Identity = 122/166 (73.49%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS LNCGK +VWLDP+E   IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLNCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+  +AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

The following BLAST results are available for this feature:

BLAST of CSPI01G04420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL193_ARATH	4.6e-59	73.49	60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3	[more]
RL191_ARATH	3.9e-58	72.29	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1	[more]
RL192_ARATH	9.6e-57	69.88	60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	[more]
RL19_ICTPU	1.3e-50	61.54	60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	[more]
RL19_DANRE	2.3e-50	61.54	60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1	[more]

BLAST of CSPI01G04420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8_CUCSA	8.4e-84	99.42	Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1	[more]
A0A0D9Z714_9ORYZ	2.3e-57	73.37	Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1	[more]
A0A0E0NUR6_ORYRU	2.3e-57	73.37	Ribosomal protein L19 OS=Oryza rufipogon PE=3 SV=1	[more]
Q10LR6_ORYSJ	2.3e-57	73.37	Ribosomal protein L19 OS=Oryza sativa subsp. japonica GN=Os03g0337800 PE=2 SV=1	[more]
A0A0E0GM45_ORYNI	2.3e-57	73.37	Ribosomal protein L19 OS=Oryza nivara PE=3 SV=1	[more]

BLAST of CSPI01G04420 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02230.1	2.6e-60	73.49	Ribosomal protein L19e family protein	[more]
AT1G02780.1	2.2e-59	72.29	Ribosomal protein L19e family protein	[more]
AT3G16780.1	5.4e-58	69.88	Ribosomal protein L19e family protein	[more]
AT4G16030.1	7.9e-09	38.14	Ribosomal protein L19e family protein	[more]

BLAST of CSPI01G04420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439153\|ref\|XP_004137352.1\|	1.2e-83	99.42	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus]	[more]
gi\|659107003\|ref\|XP_008453495.1\|	1.0e-82	98.27	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
gi\|727419957\|ref\|XP_010429437.1\|	1.5e-57	74.10	PREDICTED: 60S ribosomal protein L19-3-like [Camelina sativa]	[more]
gi\|1002256594\|ref\|XP_015632604.1\|	3.3e-57	73.37	PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group]	[more]
gi\|527205415\|gb\|EPS71288.1\|	3.3e-57	73.49	hypothetical protein M569_03471, partial [Genlisea aurea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000196	Ribosomal_L19/L19e
IPR015972	Ribosomal_L19/L19e_dom1
IPR015974	Ribosomal protein L19/L19e, domain 3
IPR023638	Ribosomal_L19/L19e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G04420.1	CSPI01G04420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e domain	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 score: 2.3
IPR000196	Ribosomal protein L19/L19e domain	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 score: 2.4
IPR000196	Ribosomal protein L19/L19e domain	unknown	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144 score: 1.19
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..53 score: 4.8
IPR015974	Ribosomal protein L19/L19e, domain 3	GENE3D	G3DSA:1.10.1200.60		coord: 90..149 score: 8.9
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26 scor
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..164 score: 1.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G04420	Cla018917	Watermelon (97103) v1	cpiwmB100
CSPI01G04420	MELO3C017364	Melon (DHL92) v3.5.1	cpimeB056
CSPI01G04420	ClCG06G014250	Watermelon (Charleston Gray)	cpiwcgB084
CSPI01G04420	Lsi06G012730	Bottle gourd (USVL1VR-Ls)	cpilsiB071
CSPI01G04420	MELO3C017364.2	Melon (DHL92) v3.6.1	cpimedB050
CSPI01G04420	Cla97C06G123710	Watermelon (97103) v2	cpiwmbB080
CSPI01G04420	Bhi02G000109	Wax gourd	cpiwgoB079
CSPI01G04420	Cucsa.111630	Cucumber (Gy14) v1	cgycpiB137
CSPI01G04420	CmaCh10G003330	Cucurbita maxima (Rimu)	cmacpiB051
CSPI01G04420	CmoCh10G003590	Cucurbita moschata (Rifu)	cmocpiB042
CSPI01G04420	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cpecpiB363
CSPI01G04420	Carg15182	Silver-seed gourd	carcpiB0821

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G04420	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G04420	Silver-seed gourd	carcpiB0628
CSPI01G04420	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G04420	Cucurbita maxima (Rimu)	cmacpiB086
CSPI01G04420	Cucurbita moschata (Rifu)	cmocpiB079
CSPI01G04420	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G04420	Cucurbita pepo (Zucchini)	cpecpiB657