CmaCh10G003330 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh10G003330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein L19
Location	Cma_Chr10 : 1533195 .. 1534582 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGGGGAAGGCATAATCCTTGCATCCCAAGTAACCCATGACCGACCACCTAGCATTCCACTTCTATATTAGAGCTTTCAAATTTCATTTAGAAATCTGTCTCAACGCTCTTTCAAGTTTAGCAGTGTTCTTTTTGGATTACCCATCAAGAAGAACCCTTTCATCAGTGCACAGAGAAGAAACCACCACAAGCAGCCCCAACAATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCAACATCTCCTTAGCCAATTCTAGTAAGTACAACAACTTTCCAAGAACTATCATCTGGTTTTTTTCTTCCTGTTGAACTTGATCAGTCATGAAGTTTGCTTATGAGTGCACAACCATGTTTAAGAGGAGAGGAGAGAAGAAAAGAAAAGGTTTGGCAAACATGAATAATTGATTCTACCACATACAGATTTAACAAAAGAGTGAACAATGAATTCTTTTGTTTCAGGAAAGAATTTTGTACCTGATATTAACAATTTAAAAACATTTTAACTAGAAAACACTTGAAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAGGATGGCTTGATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCGCGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGATCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATGAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCACTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAAAACAGTTGATTAGAACATAAGTGCATAATTGTCCTTTTATTTTTGCAAGATCATATGTATTTGTCTATTTGTATATTTGTCACCAGTTCTATATTGTAATGTTTGTTATTTAGGCTACTTTTTATTTTTCATAGCATGCCAGAATTTGAATAAGTATTGTAGAGGAAAAAAAATAAGTTACAAGTTAAATGGAAGTTGTGCATAACCATTTATTAACTATATGCTTTACAGTATGTAGCTTGATTGTCAGTTCAAATAGAGGGAAGAAAGCATCATACTGCAACTCATAATGCTTTTCC

mRNA sequence

CGAGGGGAAGGCATAATCCTTGCATCCCAAGTAACCCATGACCGACCACCTAGCATTCCACTTCTATATTAGAGCTTTCAAATTTCATTTAGAAATCTGTCTCAACGCTCTTTCAAGTTTAGCAGTGTTCTTTTTGGATTACCCATCAAGAAGAACCCTTTCATCAGTGCACAGAGAAGAAACCACCACAAGCAGCCCCAACAATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCAACATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGCTTGATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCGCGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGATCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATGAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCACTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAAAACAGTTGATTAGAACATAAGTGCATAATTGTCCTTTTATTTTTGCAAGATCATATGTATTTGTCTATTTGTATATTTGTCACCAGTTCTATATTGTAATGTTTGTTATTTAGGCTACTTTTTATTTTTCATAGCATGCCAGAATTTGAATAAGTATTGTAGAGGAAAAAAAATAAGTTACAAGTTAAATGGAAGTTGTGCATAACCATTTATTAACTATATGCTTTACAGTATGTAGCTTGATTGTCAGTTCAAATAGAGGGAAGAAAGCATCATACTGCAACTCATAATGCTTTTCC

Coding sequence (CDS)

ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCAACATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGCTTGATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCGCGAAGCAAAATCAAGAGGACGACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGATCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATGAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCACTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTTCTTATGGAGTGGAAGCTTCATAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSKFRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIYHEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYTATTGSGSDKIHTFRECLSYGVEAS

Homology

[Close]

BLAST of CmaCh10G003330 vs. Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.4e-61
Identity = 123/188 (65.43%), Postives = 154/188 (81.91%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+ +IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ + AK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY RVKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 ATTGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of CmaCh10G003330 vs. Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 235.3 bits (599), Expect = 5.7e-61
Identity = 123/188 (65.43%), Postives = 153/188 (81.38%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE  +IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+RQ   AK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 ATTGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of CmaCh10G003330 vs. Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.0e-59
Identity = 118/192 (61.46%), Postives = 152/192 (79.17%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+ +IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R   EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK+K+EKA E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 ATTGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]

BLAST of CmaCh10G003330 vs. Swiss-Prot
Match: RL19_TETTS (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) GN=RPL19 PE=1 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.2e-52
Identity = 108/167 (64.67%), Postives = 135/167 (80.84%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS L CG++R+WLDPNE+  IS+ANSR SIRKLIKDGL++KR+T IHS+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R   EAK +GRH+G GKR+GT+ AR+PTK+LWMRR R+LRRLLRKYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNS 168
           HE Y   KGN+YKNK VL+E IH  K++K     L++Q EA+RA+N+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNT 167

[Close]

BLAST of CmaCh10G003330 vs. Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 6.4e-52
Identity = 104/169 (61.54%), Postives = 137/169 (81.07%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDGLIIK+  T+HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R R++  A+ +GRH G GKR+GT  AR+P KL WMRRMRILRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKA 170
           H +Y R KGNV+KNKR+LME+IHK+K+++A ++ LS Q EA+R++  +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREA 169

[Close]

BLAST of CmaCh10G003330 vs. TrEMBL
Match: A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.0e-69
Identity = 145/171 (84.80%), Postives = 156/171 (91.23%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ET  ISLANSRMSIRKLIKDGLIIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            RSRQ  +AKSRGRHSG GKRRGTKEARLPTKLLWMRRMR+LRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 172
           H+MY RVKGNVYKNKRVLME+IHKV +EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of CmaCh10G003330 vs. TrEMBL
Match: A0A061DYW5_THECC (Ribosomal protein L19 OS=Theobroma cacao GN=TCM_004725 PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.9e-61
Identity = 125/189 (66.14%), Postives = 155/189 (82.01%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRL+AS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 ATTGSGSDK 190
              G G DK
Sbjct: 181 LAQGPGGDK 189

[Close]

BLAST of CmaCh10G003330 vs. TrEMBL
Match: A0A164YYZ1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018315 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.9e-61
Identity = 125/186 (67.20%), Postives = 154/186 (82.80%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLA+S L CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKGKVWLDPNESNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRH+GYGKRRGT+EARLPTK+LWMRRMR+LRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHAGYGKRRGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNVYKNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + ++D  
Sbjct: 121 HDMYMKVKGNVYKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARRDER 180

Query: 181 ATTGSG 187
              G G
Sbjct: 181 LAKGPG 186

[Close]

BLAST of CmaCh10G003330 vs. TrEMBL
Match: A0A068V9R7_COFCA (Ribosomal protein L19 OS=Coffea canephora GN=GSCOC_T00000698001 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60
Identity = 124/187 (66.31%), Postives = 154/187 (82.35%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 ATTGSGS 188
              G G+
Sbjct: 181 LAQGPGA 187

[Close]

BLAST of CmaCh10G003330 vs. TrEMBL
Match: B9SAV9_RICCO (Ribosomal protein L19 OS=Ricinus communis GN=RCOM_1179520 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.0e-60
Identity = 125/189 (66.14%), Postives = 155/189 (82.01%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEANEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREER 180

Query: 181 ATTGSGSDK 190
              G G++K
Sbjct: 181 LAQGPGAEK 189

[Close]

BLAST of CmaCh10G003330 vs. TAIR10
Match: AT1G02780.1 (AT1G02780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-62
Identity = 123/188 (65.43%), Postives = 154/188 (81.91%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+ +IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ + AK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY RVKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 ATTGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of CmaCh10G003330 vs. TAIR10
Match: AT4G02230.1 (AT4G02230.1 Ribosomal protein L19e family protein)

HSP 1 Score: 235.3 bits (599), Expect = 3.2e-62
Identity = 123/188 (65.43%), Postives = 153/188 (81.38%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE  +IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+RQ   AK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 ATTGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of CmaCh10G003330 vs. TAIR10
Match: AT3G16780.1 (AT3G16780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 228.4 bits (581), Expect = 4.0e-60
Identity = 118/192 (61.46%), Postives = 152/192 (79.17%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+ +IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R   EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK+K+EKA E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 ATTGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]

BLAST of CmaCh10G003330 vs. TAIR10
Match: AT4G16030.1 (AT4G16030.1 Ribosomal protein L19e family protein)

HSP 1 Score: 61.2 bits (147), Expect = 8.4e-10
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 1


Query: 56  TIHSKFRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKI 115
           +IH   RSR  R+     RH+GYGK       R+  +L   RR+++L+RLL+K+   +KI
Sbjct: 3   SIHFHSRSRARRKC----RHTGYGKDTMEALRRIMKRLT--RRLKMLKRLLKKFCWNKKI 62

Query: 116 DKHIY-HEMYTRVKGNVYKNKRVLMENIHKVKSEK---ASERTLSAQVEAKRARNS 168
           DK +Y H+M+ +VKG VYKNK VLME++HK   E+    SE  L+ + E ++  ++
Sbjct: 63  DKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of CmaCh10G003330 vs. NCBI nr
Match: gi|659107003|ref|XP_008453495.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 275.4 bits (703), Expect = 8.0e-71
Identity = 148/171 (86.55%), Postives = 157/171 (91.81%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNET  ISLANSRMSIRKLIKDGLIIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            RSRQ  +AKSRGRHSG GKRRGTKEARLPTKLLWMRRMR+LRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 172
           H+MY RVKGNVYKNKRVLME+IHKVK+EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of CmaCh10G003330 vs. NCBI nr
Match: gi|449439153|ref|XP_004137352.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 5.7e-69
Identity = 145/171 (84.80%), Postives = 156/171 (91.23%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ET  ISLANSRMSIRKLIKDGLIIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            RSRQ  +AKSRGRHSG GKRRGTKEARLPTKLLWMRRMR+LRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 172
           H+MY RVKGNVYKNKRVLME+IHKV +EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAII 171

[Close]

BLAST of CmaCh10G003330 vs. NCBI nr
Match: gi|729454118|ref|XP_010523961.1| (PREDICTED: 60S ribosomal protein L19-3 [Tarenaya hassleriana])

HSP 1 Score: 244.2 bits (622), Expect = 2.0e-61
Identity = 127/192 (66.15%), Postives = 156/192 (81.25%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKMARREER 180

Query: 181 ATTGSGSDKIHT 193
              G G DK  T
Sbjct: 181 LAQGPGGDKAAT 192

[Close]

BLAST of CmaCh10G003330 vs. NCBI nr
Match: gi|729414432|ref|XP_010556721.1| (PREDICTED: 60S ribosomal protein L19-3-like [Tarenaya hassleriana])

HSP 1 Score: 242.3 bits (617), Expect = 7.5e-61
Identity = 125/188 (66.49%), Postives = 154/188 (81.91%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 ATTGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]

BLAST of CmaCh10G003330 vs. NCBI nr
Match: gi|729355800|ref|XP_010544991.1| (PREDICTED: 60S ribosomal protein L19-1-like [Tarenaya hassleriana])

HSP 1 Score: 241.9 bits (616), Expect = 9.8e-61
Identity = 125/189 (66.14%), Postives = 154/189 (81.48%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG II++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120
            R+R+ +EAK +GRHSGYGKR+GT+EARLPTK+LWMRRMR+LRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 ATTGSGSDK 190
              G   DK
Sbjct: 181 LAMGPAGDK 189

The following BLAST results are available for this feature:

BLAST of CmaCh10G003330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL191_ARATH	3.4e-61	65.43	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1	[more]
RL193_ARATH	5.7e-61	65.43	60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3	[more]
RL192_ARATH	7.0e-59	61.46	60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	[more]
RL19_TETTS	2.2e-52	64.67	60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) GN=RPL19 PE=...	[more]
RL19_ICTPU	6.4e-52	61.54	60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	[more]

BLAST of CmaCh10G003330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8_CUCSA	4.0e-69	84.80	Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1	[more]
A0A061DYW5_THECC	8.9e-61	66.14	Ribosomal protein L19 OS=Theobroma cacao GN=TCM_004725 PE=3 SV=1	[more]
A0A164YYZ1_DAUCA	8.9e-61	67.20	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018315 PE=4 SV=1	[more]
A0A068V9R7_COFCA	1.2e-60	66.31	Ribosomal protein L19 OS=Coffea canephora GN=GSCOC_T00000698001 PE=3 SV=1	[more]
B9SAV9_RICCO	2.0e-60	66.14	Ribosomal protein L19 OS=Ricinus communis GN=RCOM_1179520 PE=3 SV=1	[more]

BLAST of CmaCh10G003330 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02780.1	1.9e-62	65.43	Ribosomal protein L19e family protein	[more]
AT4G02230.1	3.2e-62	65.43	Ribosomal protein L19e family protein	[more]
AT3G16780.1	4.0e-60	61.46	Ribosomal protein L19e family protein	[more]
AT4G16030.1	8.4e-10	40.52	Ribosomal protein L19e family protein	[more]

BLAST of CmaCh10G003330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107003\|ref\|XP_008453495.1\|	8.0e-71	86.55	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
gi\|449439153\|ref\|XP_004137352.1\|	5.7e-69	84.80	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus]	[more]
gi\|729454118\|ref\|XP_010523961.1\|	2.0e-61	66.15	PREDICTED: 60S ribosomal protein L19-3 [Tarenaya hassleriana]	[more]
gi\|729414432\|ref\|XP_010556721.1\|	7.5e-61	66.49	PREDICTED: 60S ribosomal protein L19-3-like [Tarenaya hassleriana]	[more]
gi\|729355800\|ref\|XP_010544991.1\|	9.8e-61	66.14	PREDICTED: 60S ribosomal protein L19-1-like [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000196	Ribosomal_L19/L19e
IPR015972	Ribosomal_L19/L19e_dom1
IPR015974	Ribosomal protein L19/L19e, domain 3
IPR023638	Ribosomal_L19/L19e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0042788	polysomal ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh10G003330.1	CmaCh10G003330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e domain	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 score: 4.7
IPR000196	Ribosomal protein L19/L19e domain	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 score: 3.4
IPR000196	Ribosomal protein L19/L19e domain	unknown	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144 score: 8.24
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..54 score: 3.0
IPR015974	Ribosomal protein L19/L19e, domain 3	GENE3D	G3DSA:1.10.1200.60		coord: 90..149 score: 4.0
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26 scor
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..166 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh10G003330	Cucsa.111630	Cucumber (Gy14) v1	cgycmaB0256
CmaCh10G003330	Cla018917	Watermelon (97103) v1	cmawmB071
CmaCh10G003330	Csa1G025150	Cucumber (Chinese Long) v2	cmacuB050
CmaCh10G003330	MELO3C017364	Melon (DHL92) v3.5.1	cmameB067
CmaCh10G003330	ClCG06G014250	Watermelon (Charleston Gray)	cmawcgB071
CmaCh10G003330	CSPI01G04420	Wild cucumber (PI 183967)	cmacpiB051
CmaCh10G003330	CmoCh10G003590	Cucurbita moschata (Rifu)	cmacmoB067
CmaCh10G003330	Lsi06G012730	Bottle gourd (USVL1VR-Ls)	cmalsiB075
CmaCh10G003330	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cmacpeB080
CmaCh10G003330	MELO3C017364.2	Melon (DHL92) v3.6.1	cmamedB070
CmaCh10G003330	CsaV3_1G004430	Cucumber (Chinese Long) v3	cmacucB0060
CmaCh10G003330	Cla97C06G123710	Watermelon (97103) v2	cmawmbB081
CmaCh10G003330	Bhi02G000109	Wax gourd	cmawgoB0077
CmaCh10G003330	CsGy1G004340	Cucumber (Gy14) v2	cgybcmaB006
CmaCh10G003330	Carg15182	Silver-seed gourd	carcmaB1091

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh10G003330	Silver-seed gourd	carcmaB0828
CmaCh10G003330	Cucurbita maxima (Rimu)	cmacmaB072
CmaCh10G003330	Cucurbita maxima (Rimu)	cmacmaB103
CmaCh10G003330	Cucurbita moschata (Rifu)	cmacmoB068
CmaCh10G003330	Cucurbita pepo (Zucchini)	cmacpeB092