Bhi02G000109 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Bhi02G000109
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Ribosomal protein L19
Location	chr2 : 2802794 .. 2804626 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTATTTTATCTCACGCTCTTTCAAGTTTGCTATAGTGACCCATCAAGAAGAACCCAGTTCAGTTTTGAGGAGAAGCCACCATAAGCAGCACCAACAATGGTGTCCCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGTGTATGGCTTGATCCCGCCGAGACCGTCACCATCTCCTTAGCCAATTCAAGTAAGCACTGCAACTTTGCTCGAGTTATTACCTCTTTTCTTTTCTCTTCTCTCTCTTTTTTTTTTTTGTGTTAAAATTTGATCTGTCCTGAAATTTGCTTGTGAGTGCGTAACCAATCATATTTAAAATGATTCTAAAATCATTTTTGTCGTGTTGAAATCGCATCCAGATGTTTGACATTGAATAAAATTGAAGGAAAATCTAAAGACTAAAAGCATTTTAAATTGATTTTTCAGAAGAATGAGTTGATATACGATTTTTGTCGAGATGGTTGACTGGGAATAAGTCCAAAAAATGACTATCTAGTTCATTTTTATTAAAATATTGCCCGTTAGCTATTTGTAAAATGATTTTTTTAATTTAAATTATCTGTTAAAAAATGACAAGTATTACCTACCATGAAGAAGTGCTTAGTAAGTAAATCAAACAAGATATATGATCTCAATTTTCATTTGATATATCACACATTTATTTACTCAACATATCAACAATGCATATAAAAGTTTAACAGTAAACAAATGAAAAAAATATATACTTTCATGGAAAATTTGTTAAAAATATTTTCAAATATAGCAAAATGTTAGTCCACCACTAATAGATCATAGTAGTTTTATTAGTGTATCGCTGATAAATAGTGACATTTTACTATTTTTGTAAATATTTTGGTTCATTTTATTATATTTGAAAACAATCCTATTTTCATAAGTATTTAGTTAAATAATTTCTCAAATAGAAAATACTACGTTAGTGATTTGATAATTCTAAAATCACTTTTGAAACAAAATATAATAATTCAAAACCACTTTTAAATATATGAAACCACTTTTTAGAGTTTGGAACCAAACATAAATACAATTGTATAAAGATTAATTTCACAAAATCATACGTATCTAACTCATTTTTCAAAATCACTACTTCAACCATCACTCTCACCCTTATAATAATTGATTCTACCAAATTTAACTCAAGAGTGAACAATGAGTTCTTTAGTTTCAGGAAAGAATTTTGTACCTGATATTGACAATTCAAGCAGCAAACTTGTTTCTAATAGAATAAAAACATTGTAACTACCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGATTGACAACAACTCATTCAAAATCGCGATCTCGACGACGCAGCGATGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTGCCTACAAAGCTGTTATGGATGAGAAGAATGAGAGTCCTGCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGCATTCACAAAGTCAAGGCTGAAAAAGCATCAGAAAAAACACTTTCTATTCAGTTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTACCGTAAGGTTGTAAACCAGAAAGATTACTCTACCATTAAGGCTCTGGCTGTGACAATATTCACACATTCAGGGCCTGTCTTCCTTTTGAGGGAAGCTCAATAAAACAGATGGTTAGATCATAAATATATGATGGCCATTTTACTTTCACAAC

mRNA sequence

AATTTATTTTATCTCACGCTCTTTCAAGTTTGCTATAGTGACCCATCAAGAAGAACCCAGTTCAGTTTTGAGGAGAAGCCACCATAAGCAGCACCAACAATGGTGTCCCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGTGTATGGCTTGATCCCGCCGAGACCGTCACCATCTCCTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGATTGACAACAACTCATTCAAAATCGCGATCTCGACGACGCAGCGATGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTGCCTACAAAGCTGTTATGGATGAGAAGAATGAGAGTCCTGCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGCATTCACAAAGTCAAGGCTGAAAAAGCATCAGAAAAAACACTTTCTATTCAGTTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTACCGTAAGGTTGTAAACCAGAAAGATTACTCTACCATTAAGGCTCTGGCTGTGACAATATTCACACATTCAGGGCCTGTCTTCCTTTTGAGGGAAGCTCAATAAAACAGATGGTTAGATCATAAATATATGATGGCCATTTTACTTTCACAAC

Coding sequence (CDS)

ATGGTGTCCCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGTGTATGGCTTGATCCCGCCGAGACCGTCACCATCTCCTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGATTGACAACAACTCATTCAAAATCGCGATCTCGACGACGCAGCGATGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTGCCTACAAAGCTGTTATGGATGAGAAGAATGAGAGTCCTGCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGCATTCACAAAGTCAAGGCTGAAAAAGCATCAGAAAAAACACTTTCTATTCAGTTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTACCGTAAGGTTGTAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSKSRSRRRSDAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVRL

Homology

[Close]

BLAST of Bhi02G000109 vs. Swiss-Prot
Match: sp|Q9SRX2|RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.5e-52
Identity = 112/172 (65.12%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+                  T+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  +  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. Swiss-Prot
Match: sp|P49693|RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 203.8 bits (517), Expect = 1.6e-51
Identity = 111/172 (64.53%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP E   IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+                  T+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  +  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. Swiss-Prot
Match: sp|Q9LUQ6|RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.5e-49
Identity = 106/172 (61.63%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R                   T+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N  +  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. Swiss-Prot
Match: sp|Q90YU8|RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.5e-44
Identity = 94/164 (57.32%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP ET  I+ ANSR +IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R R+                  T  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRA 165
           H +Y+R KGNV+KNKR+LME IHK+KA++A +K LS Q EA+R+
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRS 164

[Close]

BLAST of Bhi02G000109 vs. Swiss-Prot
Match: sp|Q7ZYS1|RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis OX=8355 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.2e-44
Identity = 93/164 (56.71%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP ET  I+ ANSR  IRKL+KDGLII++  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R R+                  T  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRA 165
           H +Y++VKGNV+KNKR+LME IHK+KA+KA +K L+ Q EA+R+
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRS 164

[Close]

BLAST of Bhi02G000109 vs. TAIR10
Match: AT1G02780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 205.3 bits (521), Expect = 3.0e-53
Identity = 112/172 (65.12%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+                  T+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  +  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. TAIR10
Match: AT4G02230.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 203.8 bits (517), Expect = 8.8e-53
Identity = 111/172 (64.53%), Postives = 131/172 (76.16%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP E   IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+                  T+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  +  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. TAIR10
Match: AT3G16780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 196.4 bits (498), Expect = 1.4e-50
Identity = 106/172 (61.63%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R                   T+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N  +  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. TAIR10
Match: AT4G16030.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 45.8 bits (107), Expect = 3.1e-05
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 113 EKIDKHI-YHQMYIRVKGNVYKNKRVLMESIHKVKAEK---ASEKTLSIQLEAKRAINS 168
           +KIDK + YH M+++VKG VYKNK VLMES+HK   E+    SE  L+++ E ++  ++
Sbjct: 54  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of Bhi02G000109 vs. TrEMBL
Match: tr|A0A1S3BVU0|A0A1S3BVU0_CUCME (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.6e-64
Identity = 156/173 (90.17%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDP ET TISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           S    XXXXXXXXXXXXXXX   TKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVK EKA EKTLSIQ+EAKRAINSKA +RL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Bhi02G000109 vs. TrEMBL
Match: tr|A0A0A0LSW8|A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.0e-63
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP ET TISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           S    XXXXXXXXXXXXXXX   TKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKA EKTLSIQ+EAKRAINSKA +RL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Bhi02G000109 vs. TrEMBL
Match: tr|A0A2G9I320|A0A2G9I320_9LAMI (Ribosomal protein L19 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03106 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 7.7e-51
Identity = 114/166 (68.67%), Postives = 128/166 (77.11%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP E   IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+RR                  T+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of Bhi02G000109 vs. TrEMBL
Match: tr|A0A068V9R7|A0A068V9R7_COFCA (Ribosomal protein L19 OS=Coffea canephora OX=49390 GN=GSCOC_T00000698001 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.3e-50
Identity = 114/172 (66.28%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP E   IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+RR                  T+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  +  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. TrEMBL
Match: tr|W1NT99|W1NT99_AMBTC (Ribosomal protein L19 OS=Amborella trichopoda OX=13333 GN=AMTR_s00091p00066640 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.7e-50
Identity = 114/172 (66.28%), Postives = 130/172 (75.58%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP ET  IS+ANSR +IRKL+KDG +IK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNETSEISMANSRQNIRKLVKDGFVIKKPQKIHSR 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+RR                  T+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  +  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Bhi02G000109 vs. NCBI nr
Match: XP_008453495.1 (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 156/173 (90.17%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDP ET TISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           S    XXXXXXXXXXXXXXX   TKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVK EKA EKTLSIQ+EAKRAINSKA +RL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Bhi02G000109 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 253.1 bits (645), Expect = 7.0e-64
Identity = 139/171 (81.29%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDP ET TISLANSRMSIRKLIKDGLIIKR+TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSR+                  TKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKVK+E ASE+TLS Q+EAKRA NSKATV
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of Bhi02G000109 vs. NCBI nr
Match: XP_004137352.1 (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus] >KGN63882.1 hypothetical protein Csa_1G025150 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 155/173 (89.60%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP ET TISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           S    XXXXXXXXXXXXXXX   TKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATVRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKA EKTLSIQ+EAKRAINSKA +RL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Bhi02G000109 vs. NCBI nr
Match: XP_022921592.1 (60S ribosomal protein L19-3-like [Cucurbita moschata])

HSP 1 Score: 251.9 bits (642), Expect = 1.6e-63
Identity = 138/171 (80.70%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLDCGKR+VWLDP ET TISLANSRMSIRKLIKDG IIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSR+                  TKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKVK+EKASE+TLS Q+EAKRA NSKATV
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of Bhi02G000109 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 137/171 (80.12%), Postives = 144/171 (84.21%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPAETVTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDP ET  ISLANSRMSIRKLIKDGLIIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  SRSRRXXXXXXXXXXXXXXXXXXTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSR+                  TKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKASEKTLSIQLEAKRAINSKATV 172
           H+MY RVKGNVYKNKRVLME+IHKVK+EKASE+TLS Q+EAKRA NSKATV
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

The following BLAST results are available for this feature:

BLAST of Bhi02G000109 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SRX2\|RL191_ARATH	5.5e-52	65.12	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
sp\|P49693\|RL193_ARATH	1.6e-51	64.53	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
sp\|Q9LUQ6\|RL192_ARATH	2.5e-49	61.63	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
sp\|Q90YU8\|RL19_ICTPU	2.5e-44	57.32	60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1	[more]
sp\|Q7ZYS1\|RL19_XENLA	7.2e-44	56.71	60S ribosomal protein L19 OS=Xenopus laevis OX=8355 GN=rpl19 PE=2 SV=1	[more]

BLAST of Bhi02G000109 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02780.1	3.0e-53	65.12	Ribosomal protein L19e family protein	[more]
AT4G02230.1	8.8e-53	64.53	Ribosomal protein L19e family protein	[more]
AT3G16780.1	1.4e-50	61.63	Ribosomal protein L19e family protein	[more]
AT4G16030.1	3.1e-05	45.76	Ribosomal protein L19e family protein	[more]

BLAST of Bhi02G000109 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BVU0\|A0A1S3BVU0_CUCME	1.6e-64	90.17	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1	[more]
tr\|A0A0A0LSW8\|A0A0A0LSW8_CUCSA	1.0e-63	89.60	Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1	[more]
tr\|A0A2G9I320\|A0A2G9I320_9LAMI	7.7e-51	68.67	Ribosomal protein L19 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03106 PE=...	[more]
tr\|A0A068V9R7\|A0A068V9R7_COFCA	1.3e-50	66.28	Ribosomal protein L19 OS=Coffea canephora OX=49390 GN=GSCOC_T00000698001 PE=3 SV...	[more]
tr\|W1NT99\|W1NT99_AMBTC	1.7e-50	66.28	Ribosomal protein L19 OS=Amborella trichopoda OX=13333 GN=AMTR_s00091p00066640 P...	[more]

BLAST of Bhi02G000109 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453495.1	2.4e-64	90.17	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
XP_023515875.1	7.0e-64	81.29	60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_004137352.1	1.6e-63	89.60	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus] >KGN63882.1 hypoth...	[more]
XP_022921592.1	1.6e-63	80.70	60S ribosomal protein L19-3-like [Cucurbita moschata]	[more]
XP_022988450.1	2.0e-63	80.12	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR035970	60S_ribosomal_L19/L19e_sf
IPR023638	Ribosomal_L19/L19e_CS
IPR015972	Ribosomal_L19/L19e_dom1
IPR000196	Ribosomal_L19/L19e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Bhi02M000109	Bhi02M000109	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 2.6E-78 score: 276.2
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 e-value: 3.8E-58 score: 195.5
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..55 e-value: 1.6E-26 score: 93.8
None	No IPR available	GENE3D	G3DSA:1.10.1200.240		coord: 57..172 e-value: 5.3E-47 score: 160.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..87
None	No IPR available	PANTHER	PTHR10722:SF11	60S RIBOSOMAL PROTEIN L19-1-RELATED	coord: 1..168
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..168
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Bhi02G000109	Csa1G025150	Cucumber (Chinese Long) v2	cuwgoB077
Bhi02G000109	MELO3C017364	Melon (DHL92) v3.5.1	mewgoB306
Bhi02G000109	ClCG06G014250	Watermelon (Charleston Gray)	wcgwgoB548
Bhi02G000109	CSPI01G04420	Wild cucumber (PI 183967)	cpiwgoB079
Bhi02G000109	Cucsa.111630	Cucumber (Gy14) v1	cgywgoB186
Bhi02G000109	CmaCh10G003330	Cucurbita maxima (Rimu)	cmawgoB0077
Bhi02G000109	CmoCh10G003590	Cucurbita moschata (Rifu)	cmowgoB0071
Bhi02G000109	Lsi06G012730	Bottle gourd (USVL1VR-Ls)	lsiwgoB519
Bhi02G000109	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cpewgoB0467
Bhi02G000109	MELO3C017364.2	Melon (DHL92) v3.6.1	medwgoB304
Bhi02G000109	Carg15182	Silver-seed gourd	carwgoB0924
Bhi02G000109	CsaV3_1G004430	Cucumber (Chinese Long) v3	cucwgoB085
Bhi02G000109	Cla018917	Watermelon (97103) v1	wgowmB685
Bhi02G000109	Cla97C06G123710	Watermelon (97103) v2	wgowmbB656

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Bhi02G000109	Cucumber (Gy14) v2	cgybwgoB075
Bhi02G000109	Cucurbita maxima (Rimu)	cmawgoB0152
Bhi02G000109	Cucurbita moschata (Rifu)	cmowgoB0146
Bhi02G000109	Cucurbita pepo (Zucchini)	cpewgoB0897
Bhi02G000109	Silver-seed gourd	carwgoB0710