Carg15182 (gene) Silver-seed gourd

Overview
NameCarg15182
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRibosomal protein L19
LocationCucurbita_argyrosperma_scaffold_073 : 209705 .. 210593 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGTAAGTACAACAACTTTCCAAGAATTATCATCTGGTTTTTTTCTTCCTGTTAAACTTTATCAGTCATGAAGTTGGCTTATGAGTGCACAACCATGTTTAAGAGGAGAGGAGAGAAGAAAAGAAAAGGTTTGGCGAACATAACATATACAGATTTAACAAAAGAGTGAACAATGAATTCTTTTGTTTCAGGAAAGAATTTTGTACCTGATTATTAACAATTTATCAAAGATGCAAAAGAAAAACATTTTAACTAGAAAACACATGTAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTCATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGCCAACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTCCTTATGGAGTGGAAGTTTCATAA

mRNA sequence

ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTCATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGCCAACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTCCTTATGGAGTGGAAGTTTCATAA

Coding sequence (CDS)

ATGGTGTCCCTCACCCTACAGAAGCGGCTTGCTGCCAGTAGTCTCGACTGTGGCAAGCGCCGAGTATGGCTCGATCCCAACGAGACCTGCACCATCTCCTTAGCCAATTCTAGAATGAGCATCAGAAAGCTCATAAAGGATGGTTTCATCATCAAGAGGACGACAACAATCCACTCGAAGTTTCGATCTCGACAAAGCCACGAAGCAAAATCAAGAGGCCAACATTCTGGGTATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCCACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATACTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTGCTGATGGAAAACATTCACAAGGTCAAGTCCGAAAAAGCATCAGAAAGAACACTTTCTGCACAGGTCGAGGCCAAGAGAGCAAGAAACAGTAAAGCTACAGTAAGCGTTGTAAAGCAGAAAGATTACACTGCCATTACAGGCTCTGGCAGCGACAAAATTCACACATTCAGGGAATGTCTTCCTTATGGAGTGGAAGTTTCATAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSKFRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYTAITGSGSDKIHTFRECLPYGVEVS
Homology
[Close]
BLAST of Carg15182 vs. NCBI nr
Match: XP_022921592.1 (60S ribosomal protein L19-3-like [Cucurbita moschata])

HSP 1 Score: 388.7 bits (997), Expect = 1.3e-104
Identity = 202/204 (99.02%), Postives = 204/204 (100.00%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKR+VWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQSHEAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           AITGSGSDKIHTFRECLPYGVEVS
Sbjct: 181 AITGSGSDKIHTFRECLPYGVEVS 204

[Close]
BLAST of Carg15182 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.9 bits (969), Expect = 2.2e-101
Identity = 198/204 (97.06%), Postives = 199/204 (97.55%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDG IIKR TTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQSHEAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           HQMYTRVKGNVYKNKRVLMENIHKVKSE ASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           AITGSGSDKIHTFRECL YGVE S
Sbjct: 181 AITGSGSDKIHTFRECLSYGVEAS 204

[Close]
BLAST of Carg15182 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 374.8 bits (961), Expect = 1.9e-100
Identity = 195/204 (95.59%), Postives = 198/204 (97.06%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETC ISLANSRMSIRKLIKDG IIKRTTTIHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           FRSRQS EAKSRG+HSGYGKRRGTKEARLPTKLLWMRRMR+LRRLLRKYRECEKIDKHIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H+MYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180

Query: 181 AITGSGSDKIHTFRECLPYGVEVS 205
           A TGSGSDKIHTFRECL YGVE S
Sbjct: 181 ATTGSGSDKIHTFRECLSYGVEAS 204

[Close]
BLAST of Carg15182 vs. NCBI nr
Match: XP_022135037.1 (60S ribosomal protein L19-3-like [Momordica charantia])

HSP 1 Score: 267.3 bits (682), Expect = 4.2e-68
Identity = 143/172 (83.14%), Postives = 151/172 (87.79%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAASSL CGKRRVWLDPNE  T+SLANSRMSIRKLIKDG IIKR T I SK
Sbjct: 1   MVSLALQKRLAASSLACGKRRVWLDPNEITTVSLANSRMSIRKLIKDGLIIKRLTKIRSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            RSRQ+HEA      SGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY
Sbjct: 61  ARSRQTHEAXXXXXXSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVS 173
           HQMY RVKGNVY+NKRVLMENIHKV++EKASE TL+ Q+EAKRA NSK T +
Sbjct: 121 HQMYIRVKGNVYRNKRVLMENIHKVRAEKASENTLAVQIEAKRAINSKGTTT 172

[Close]
BLAST of Carg15182 vs. NCBI nr
Match: XP_021889234.1 (60S ribosomal protein L19-3 [Carica papaya])

HSP 1 Score: 245.7 bits (626), Expect = 1.3e-61
Identity = 128/189 (67.72%), Postives = 155/189 (82.01%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDGFII+R T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEANEISMANSRQNIRKLVKDGFIIRRPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGSDK 190
              G G+DK
Sbjct: 181 LAQGPGADK 189

[Close]
BLAST of Carg15182 vs. TAIR10
Match: AT4G02230.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-63
Identity = 124/188 (65.96%), Postives = 153/188 (81.38%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+RQ + AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]
BLAST of Carg15182 vs. TAIR10
Match: AT1G02780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 236.5 bits (602), Expect = 1.5e-62
Identity = 124/188 (65.96%), Postives = 152/188 (80.85%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+   AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY RVKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]
BLAST of Carg15182 vs. TAIR10
Match: AT3G16780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 230.3 bits (586), Expect = 1.0e-60
Identity = 119/192 (61.98%), Postives = 152/192 (79.17%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R  +EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK+K+EKA E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 AITGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]
BLAST of Carg15182 vs. TAIR10
Match: AT4G16030.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 42.0 bits (97), Expect = 5.3e-04
Identity = 41/116 (35.34%), Postives = 60/116 (51.72%), Query Frame = 0 

Query: 56  TIHSKFRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKI 115
           +IH   RSR    A+ + +H+GYGK   T EA                    K+   +KI
Sbjct: 3   SIHFHSRSR----ARRKCRHTGYGK--DTMEALRRIMKRLTXXXXXXXXXXXKFCWNKKI 62

Query: 116 DKHI-YHQMYTRVKGNVYKNKRVLMENIHKVKSEK---ASERTLSAQVEAKRARNS 168
           DK + YH M+ +VKG VYKNK VLME++HK   E+    SE  L+ + E ++  ++
Sbjct: 63  DKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]
BLAST of Carg15182 vs. Swiss-Prot
Match: sp|P49693|RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-61
Identity = 124/188 (65.96%), Postives = 153/188 (81.38%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+RQ + AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]
BLAST of Carg15182 vs. Swiss-Prot
Match: sp|Q9SRX2|RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.6e-61
Identity = 124/188 (65.96%), Postives = 152/188 (80.85%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+   AK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY RVKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +      +++  
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180

Query: 181 AITGSGSD 189
              G G D
Sbjct: 181 LAKGPGGD 188

[Close]
BLAST of Carg15182 vs. Swiss-Prot
Match: sp|Q9LUQ6|RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.9e-59
Identity = 119/192 (61.98%), Postives = 152/192 (79.17%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R  +EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK+K+EKA E+TL+ Q EAKR +N  +      +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180

Query: 181 AITGSGSDKIHT 193
              G G  +  T
Sbjct: 181 LAQGPGGGETTT 192

[Close]
BLAST of Carg15182 vs. Swiss-Prot
Match: sp|P0DJ60|RL19_TETTS (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN=RPL19 PE=1 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-51
Identity = 106/167 (63.47%), Postives = 134/167 (80.24%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS L CG++R+WLDPNE+  IS+ANSR SIRKLIKDG ++KR+T IHS+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R   EAK +G+H+G GKR+GT+ AR+PTK+LWMRR RVLRRLLRKYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNS 168
           H+ Y   KGN+YKNK VL+E IH  K++K     L++Q EA+RA+N+
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNT 167

[Close]
BLAST of Carg15182 vs. Swiss-Prot
Match: sp|Q90YU8|RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 9.3e-51
Identity = 100/165 (60.61%), Postives = 134/165 (81.21%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDG IIK+  T+HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R R++  A+ +G+H G GKR+GT  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRAR 166
           H +Y R KGNV+KNKR+LME+IHK+K+++A ++ LS Q EA+R++
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSK 165

[Close]
BLAST of Carg15182 vs. TrEMBL
Match: tr|A0A2C9WN69|A0A2C9WN69_MANES (Ribosomal protein L19 OS=Manihot esculenta OX=3983 GN=MANES_01G222800 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.5e-61
Identity = 127/189 (67.20%), Postives = 155/189 (82.01%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGSDK 190
              G G+DK
Sbjct: 181 LAQGPGADK 189

[Close]
BLAST of Carg15182 vs. TrEMBL
Match: tr|A0A2C9VRX5|A0A2C9VRX5_MANES (Ribosomal protein L19 OS=Manihot esculenta OX=3983 GN=MANES_05G000100 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.3e-61
Identity = 127/189 (67.20%), Postives = 154/189 (81.48%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGSDK 190
              G G DK
Sbjct: 181 LAQGPGGDK 189

[Close]
BLAST of Carg15182 vs. TrEMBL
Match: tr|A0A1S3BVU0|A0A1S3BVU0_CUCME (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 9.7e-61
Identity = 135/171 (78.95%), Postives = 141/171 (82.46%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNET TISLANSRMSIRKLIKDG IIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
                               RRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 172
           HQMY RVKGNVYKNKRVLME+IHKVK+EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAII 171

[Close]
BLAST of Carg15182 vs. TrEMBL
Match: tr|A0A061DYW5|A0A061DYW5_THECC (Ribosomal protein L19 OS=Theobroma cacao OX=3641 GN=TCM_004725 PE=3 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 9.7e-61
Identity = 126/189 (66.67%), Postives = 154/189 (81.48%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRL+AS L CGK +VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLSASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGSDK 190
              G G DK
Sbjct: 181 LAQGPGGDK 189

[Close]
BLAST of Carg15182 vs. TrEMBL
Match: tr|A0A068V9R7|A0A068V9R7_COFCA (Ribosomal protein L19 OS=Coffea canephora OX=49390 GN=GSCOC_T00000698001 PE=3 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 1.3e-60
Identity = 125/187 (66.84%), Postives = 153/187 (81.82%), Query Frame = 0 

Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDGFII++ T IHS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  FRSRQSHEAKSRGQHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R+R+  EAK +G+HSGYGKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATVSVVKQKDYT 180
           H MY +VKGNV+KNKRVLME+IHK K+EKA E+TLS Q EAKRA+N  +    + +++  
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 180

Query: 181 AITGSGS 188
              G G+
Sbjct: 181 LAQGPGA 187

The following BLAST results are available for this feature:
BLAST of Carg15182 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022921592.11.3e-10499.0260S ribosomal protein L19-3-like [Cucurbita moschata][more]
XP_023515875.12.2e-10197.0660S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo][more]
XP_022988450.11.9e-10095.5960S ribosomal protein L19-1-like [Cucurbita maxima][more]
XP_022135037.14.2e-6883.1460S ribosomal protein L19-3-like [Momordica charantia][more]
XP_021889234.11.3e-6167.7260S ribosomal protein L19-3 [Carica papaya][more]
BLAST of Carg15182 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G02230.18.5e-6365.96Ribosomal protein L19e family protein[more]
AT1G02780.11.5e-6265.96Ribosomal protein L19e family protein[more]
AT3G16780.11.0e-6061.98Ribosomal protein L19e family protein[more]
AT4G16030.15.3e-0435.34Ribosomal protein L19e family protein[more]
BLAST of Carg15182 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49693|RL193_ARATH1.5e-6165.9660S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3[more]
sp|Q9SRX2|RL191_ARATH2.6e-6165.9660S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1[more]
sp|Q9LUQ6|RL192_ARATH1.9e-5961.9860S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1[more]
sp|P0DJ60|RL19_TETTS2.5e-5163.4760S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) OX=312017 GN... [more]
sp|Q90YU8|RL19_ICTPU9.3e-5160.6160S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1[more]
BLAST of Carg15182 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2C9WN69|A0A2C9WN69_MANES2.5e-6167.20Ribosomal protein L19 OS=Manihot esculenta OX=3983 GN=MANES_01G222800 PE=3 SV=1[more]
tr|A0A2C9VRX5|A0A2C9VRX5_MANES3.3e-6167.20Ribosomal protein L19 OS=Manihot esculenta OX=3983 GN=MANES_05G000100 PE=3 SV=1[more]
tr|A0A1S3BVU0|A0A1S3BVU0_CUCME9.7e-6178.95Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1[more]
tr|A0A061DYW5|A0A061DYW5_THECC9.7e-6166.67Ribosomal protein L19 OS=Theobroma cacao OX=3641 GN=TCM_004725 PE=3 SV=1[more]
tr|A0A068V9R7|A0A068V9R7_COFCA1.3e-6066.84Ribosomal protein L19 OS=Coffea canephora OX=49390 GN=GSCOC_T00000698001 PE=3 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0022625cytosolic large ribosomal subunit
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR03597060S_ribosomal_L19/L19e_sf
IPR033935Ribosomal_L19_euka
IPR023638Ribosomal_L19/L19e_CS
IPR015972Ribosomal_L19/L19e_dom1
IPR000196Ribosomal_L19/L19e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg15182-RACarg15182-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000196Ribosomal protein L19/L19eSMARTSM01416Ribosomal_L19e_2coord: 3..146
e-value: 2.7E-80
score: 282.7
IPR000196Ribosomal protein L19/L19ePFAMPF01280Ribosomal_L19ecoord: 4..145
e-value: 4.8E-59
score: 198.5
IPR015972Ribosomal protein L19/L19e, domain 1GENE3DG3DSA:1.10.1650.10coord: 1..56
e-value: 3.1E-27
score: 96.0
NoneNo IPR availableGENE3DG3DSA:1.10.1200.240coord: 57..184
e-value: 3.2E-48
score: 164.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..84
NoneNo IPR availablePANTHERPTHR10722:SF1160S RIBOSOMAL PROTEIN L19-1-RELATEDcoord: 1..188
NoneNo IPR availablePANTHERPTHR1072260S RIBOSOMAL PROTEIN L19coord: 1..188
IPR023638Ribosomal protein L19/L19e conserved sitePROSITEPS00526RIBOSOMAL_L19Ecoord: 7..26
IPR033935Ribosomal protein L19, eukaryoticCDDcd01417Ribosomal_L19e_Ecoord: 4..166
e-value: 2.03177E-71
score: 215.677
IPR035970Ribosomal protein L19/L19e superfamilySUPERFAMILYSSF48140Ribosomal protein L19 (L19e)coord: 3..144