MELO3C017364 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C017364
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Ribosomal protein L19
Location	chr2 : 23098049 .. 23100091 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGCATTTAAGCCAATTAGCTCACCTCAAGCTCTTTCAAGTTTGCATTTTTTTGGTCCAGTGTAAAGAAGAAGTCACCACAAGCAGAACAAACAATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGTGGCAAACGTCGAGTATGGCTTGATCCGAACGAGACCACCACCATCTCCTTGGCCAATTCAAGTAAGCACTTCAACTTTTTCTAGAAAATTGTTGCATCTTCTCTTTTCTTTTCTCTTCGTGTTAGACTTGAAGAGTCATGAAGTTTAGTTGCAAGTTCATAACCATTTAAAGAGAACAGTGAAGAAGATAGAAAAATCTATCTTAGTATAAGGCAGGTTTGATCAGTCATCACTTTGATGTTCGATGTTGAGTAATATAGATTTTAGAAAAATCTAAAAACATTTTAAATAGTGTTTTCTGTTGAGGTGCTTAATAACTAGATGCATGTTTTGAAATAATTATAATAAACGTTCTTTTACATACATATCAATCATGCATATAAAATTTTCATAATAAAACAAATAAAAAAATTAGAGAAAAATATAGTTATCACAATTATTTAGTTAAATAAGTTCTCACATTGAAAATTCTTTTTTAGACCCCATTTGATAAAATTTTTGTTATTGAAAATTAAACCTATAGACACCTAACTTCCTACCTTTGCTATTATATACTACCAATTGTTTAAATAACCAAACCAAAACTTGAAACTAAAAAAAGTAACTTAAAAGAGTTATTTTTGTTTTTGAAATTTAGCTAAGAATTCAACCACACAGAGAGGATATAGACCTAGTTTTGAAAAACAAAAATAAAAAATGAAATGGTCATCAGTAATTCGATAATTCTAAAATCGTTTTTAAAACCAAACTTAATAAGTCAAGATCACTTTTAAATAAAATCACTTAGAAAGCGAACATAAATATGATTATATAAAAATCAATCGTACCATCTCTTTTTCTAAAATCATTGATTCTACTGGATAAAGATTTCACACAAGATTGCGCAACGAAATCTTTAGTTTCAGAAAAGAAATTTGTACCTGATATTAACAATTCAAGTATAGCAAAATCGTTTCTAAAAGAATAAAAACATTTGAACTAAAGCATTTGTAACTATCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGGAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGCATTCACAAAGTCAAGACCGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGAAACAGAAAGATTACTCTACCATTAAGGCTCTGGCTGTGACATAATTCACACATTCAGGGTCTGTCTTCCTCAGCCATATAGGGGAAGCTCAATAAAACAAATGGTTAGATAAAAACTGTATAATGGTCCATTAATATTTTTCAACTTCATATGTATTTGTATGTTTCACATGAGTTTCATGATGACAAATCTAACAGAGTGAACAGTAATTGTTACCTACAGATATTCAAACAGCATTCATGTGCAATGAAAAGGAAATAACATCCTATTTAGAACCTCATTTTCAGATATTTGGCCAATAGCTGGTTGGCAGGTTTTACAATATGAGAATGGAAGCTACATTGTCCAACAATGCTTTCTTGATTGTTCCATCCAAGGGAATGTCTTACACGTTACCCAAATGAATGAAGAATAACATCCATTCCAAATGCAAGCTTCCTCCATGAAGGACGATCAGAGTTCAAATTACCTTCACTTCGCTGCAT

mRNA sequence

AGAAAGCATTTAAGCCAATTAGCTCACCTCAAGCTCTTTCAAGTTTGCATTTTTTTGGTCCAGTGTAAAGAAGAAGTCACCACAAGCAGAACAAACAATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGTGGCAAACGTCGAGTATGGCTTGATCCGAACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGGAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGCATTCACAAAGTCAAGACCGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGAAACAGAAAGATTACTCTACCATTAAGGCTCTGGCTGTGACATAATTCACACATTCAGGGTCTGTCTTCCTCAGCCATATAGGGGAAGCTCAATAAAACAAATGGTTAGATAAAAACTGTATAATGGTCCATTAATATTTTTCAACTTCATATGTATTTGTATGTTTCACATGAGTTTCATGATGACAAATCTAACAGAGTGAACAGTAATTGTTACCTACAGATATTCAAACAGCATTCATGTGCAATGAAAAGGAAATAACATCCTATTTAGAACCTCATTTTCAGATATTTGGCCAATAGCTGGTTGGCAGGTTTTACAATATGAGAATGGAAGCTACATTGTCCAACAATGCTTTCTTGATTGTTCCATCCAAGGGAATGTCTTACACGTTACCCAAATGAATGAAGAATAACATCCATTCCAAATGCAAGCTTCCTCCATGAAGGACGATCAGAGTTCAAATTACCTTCACTTCGCTGCAT

Coding sequence (CDS)

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGTGGCAAACGTCGAGTATGGCTTGATCCGAACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGGAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATTAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGCATTCACAAAGTCAAGACCGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIYHQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL*

Homology

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BLAST of MELO3C017364 vs. Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 246.9 bits (629), Expect = 1.6e-64
Identity = 122/166 (73.49%), Postives = 142/166 (85.54%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK K EKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MELO3C017364 vs. Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-63
Identity = 120/166 (72.29%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK K EKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MELO3C017364 vs. Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.4e-62
Identity = 116/166 (69.88%), Postives = 140/166 (84.34%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+K EKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of MELO3C017364 vs. Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 6.2e-56
Identity = 104/169 (61.54%), Postives = 132/169 (78.11%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+K ++A +K LS Q EA+R+   +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREA 169

[Close]

BLAST of MELO3C017364 vs. Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-55
Identity = 104/169 (61.54%), Postives = 130/169 (76.92%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR  IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+K +KA +K L+ Q EA+R    +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREA 169

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BLAST of MELO3C017364 vs. TrEMBL
Match: A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 9.5e-88
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV  EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of MELO3C017364 vs. TrEMBL
Match: R0FC54_9BRAS (Ribosomal protein L19 OS=Capsella rubella GN=CARUB_v10003129mg PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.1e-63
Identity = 123/166 (74.10%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK K EKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MELO3C017364 vs. TrEMBL
Match: A0A0E0GM45_ORYNI (Ribosomal protein L19 OS=Oryza nivara PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.1e-63
Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK K EKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of MELO3C017364 vs. TrEMBL
Match: I1PB45_ORYGL (Ribosomal protein L19 OS=Oryza glaberrima PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.1e-63
Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK K EKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of MELO3C017364 vs. TrEMBL
Match: A0A0D9Z9W3_9ORYZ (Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 8.1e-63
Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK K EKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of MELO3C017364 vs. TAIR10
Match: AT4G02230.1 (AT4G02230.1 Ribosomal protein L19e family protein)

HSP 1 Score: 246.9 bits (629), Expect = 9.2e-66
Identity = 122/166 (73.49%), Postives = 142/166 (85.54%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK K EKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MELO3C017364 vs. TAIR10
Match: AT1G02780.1 (AT1G02780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 243.8 bits (621), Expect = 7.8e-65
Identity = 120/166 (72.29%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK K EKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MELO3C017364 vs. TAIR10
Match: AT3G16780.1 (AT3G16780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 239.2 bits (609), Expect = 1.9e-63
Identity = 116/166 (69.88%), Postives = 140/166 (84.34%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+K EKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of MELO3C017364 vs. TAIR10
Match: AT4G16030.1 (AT4G16030.1 Ribosomal protein L19e family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 54  LTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYE 113
           + + H  SRSR R +     RH+G GK       R+  +L   RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSRARRKC----RHTGYGKDTMEALRRIMKRLT--RRLKMLKRLLKKFCWNK 60

Query: 114 KIDRHIY-HQMYIRVKGNVYKNKRVLMESIHKVKTEKAL---EKTLSIQVEAKRAINS 168
           KID+ +Y H M+++VKG VYKNK VLMES+HK   E+     E  L+++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of MELO3C017364 vs. NCBI nr
Match: gi|659107003|ref|XP_008453495.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 339.0 bits (868), Expect = 5.0e-90
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of MELO3C017364 vs. NCBI nr
Match: gi|449439153|ref|XP_004137352.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 1.4e-87
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV  EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of MELO3C017364 vs. NCBI nr
Match: gi|727419957|ref|XP_010429437.1| (PREDICTED: 60S ribosomal protein L19-3-like [Camelina sativa])

HSP 1 Score: 249.2 bits (635), Expect = 5.2e-63
Identity = 123/166 (74.10%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRL+AS L CGK++VWLDPNE + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLSASVLKCGKKKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRD +KIDRH+Y
Sbjct: 61  SRARQLNVAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRDTKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNVYKNKRVLMESIHK K EKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVYKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MELO3C017364 vs. NCBI nr
Match: gi|565454133|ref|XP_006286754.1| (hypothetical protein CARUB_v10003129mg [Capsella rubella])

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 123/166 (74.10%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK K EKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of MELO3C017364 vs. NCBI nr
Match: gi|1002256594|ref|XP_015632604.1| (PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group])

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-62
Identity = 124/169 (73.37%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK K EKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

The following BLAST results are available for this feature:

BLAST of MELO3C017364 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL193_ARATH	1.6e-64	73.49	60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3	[more]
RL191_ARATH	1.4e-63	72.29	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1	[more]
RL192_ARATH	3.4e-62	69.88	60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	[more]
RL19_ICTPU	6.2e-56	61.54	60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	[more]
RL19_DANRE	1.1e-55	61.54	60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1	[more]

BLAST of MELO3C017364 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8_CUCSA	9.5e-88	97.69	Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1	[more]
R0FC54_9BRAS	8.1e-63	74.10	Ribosomal protein L19 OS=Capsella rubella GN=CARUB_v10003129mg PE=3 SV=1	[more]
A0A0E0GM45_ORYNI	8.1e-63	73.37	Ribosomal protein L19 OS=Oryza nivara PE=3 SV=1	[more]
I1PB45_ORYGL	8.1e-63	73.37	Ribosomal protein L19 OS=Oryza glaberrima PE=3 SV=1	[more]
A0A0D9Z9W3_9ORYZ	8.1e-63	73.37	Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1	[more]

BLAST of MELO3C017364 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02230.1	9.2e-66	73.49	Ribosomal protein L19e family protein	[more]
AT1G02780.1	7.8e-65	72.29	Ribosomal protein L19e family protein	[more]
AT3G16780.1	1.9e-63	69.88	Ribosomal protein L19e family protein	[more]
AT4G16030.1	1.8e-13	38.14	Ribosomal protein L19e family protein	[more]

BLAST of MELO3C017364 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107003\|ref\|XP_008453495.1\|	5.0e-90	100.00	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
gi\|449439153\|ref\|XP_004137352.1\|	1.4e-87	97.69	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus]	[more]
gi\|727419957\|ref\|XP_010429437.1\|	5.2e-63	74.10	PREDICTED: 60S ribosomal protein L19-3-like [Camelina sativa]	[more]
gi\|565454133\|ref\|XP_006286754.1\|	1.2e-62	74.10	hypothetical protein CARUB_v10003129mg [Capsella rubella]	[more]
gi\|1002256594\|ref\|XP_015632604.1\|	1.2e-62	73.37	PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000196	Ribosomal_L19/L19e
IPR015972	Ribosomal_L19/L19e_dom1
IPR015974	Ribosomal protein L19/L19e, domain 3
IPR023638	Ribosomal_L19/L19e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
MU47879	melon EST collection version 4.0	transcribed_cluster
MU59199	melon EST collection version 4.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C017364T1	MELO3C017364T1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
MU47879	MU47879	transcribed_cluster
MU59199	MU59199	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e domain	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 score: 1.6
IPR000196	Ribosomal protein L19/L19e domain	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 score: 6.1
IPR000196	Ribosomal protein L19/L19e domain	unknown	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144 score: 5.75
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..53 score: 1.3
IPR015974	Ribosomal protein L19/L19e, domain 3	GENE3D	G3DSA:1.10.1200.60		coord: 90..149 score: 1.7
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26 scor
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..164 score: 3.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C017364	Cla018917	Watermelon (97103) v1	mewmB289
MELO3C017364	ClCG06G014250	Watermelon (Charleston Gray)	mewcgB254
MELO3C017364	Cla97C06G123710	Watermelon (97103) v2	mewmbB261
MELO3C017364	Bhi02G000109	Wax gourd	mewgoB306
MELO3C017364	CSPI01G04420	Wild cucumber (PI 183967)	cpimeB056
MELO3C017364	Cucsa.111630	Cucumber (Gy14) v1	cgymeB160
MELO3C017364	CmaCh10G003330	Cucurbita maxima (Rimu)	cmameB067
MELO3C017364	CmoCh10G003590	Cucurbita moschata (Rifu)	cmomeB059
MELO3C017364	Lsi06G012730	Bottle gourd (USVL1VR-Ls)	lsimeB397
MELO3C017364	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cpemeB330
MELO3C017364	Carg15182	Silver-seed gourd	carmeB0785

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C017364	Cucurbita pepo (Zucchini)	cpemeB615
MELO3C017364	Cucumber (Gy14) v2	cgybmeB050
MELO3C017364	Silver-seed gourd	carmeB0599
MELO3C017364	Cucumber (Chinese Long) v3	cucmeB055
MELO3C017364	Cucurbita maxima (Rimu)	cmameB120
MELO3C017364	Cucurbita moschata (Rifu)	cmomeB109
MELO3C017364	Cucumber (Chinese Long) v2	cumeB055