ClCG06G014250 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G014250
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Ribosomal protein L19
Location	CG_Chr06 : 27695843 .. 27697268 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGTGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCCTTAGCCAATTCAAGTAAGTACAACGAATTTTCTAAAATTACATCTTTTCTTTTCTTTTCTCCTCTCTTTTTTGTGTTAAACTTTGATCCATCATGAAGTTTGCTTGTGAGTGCAAAACTACGTTAAAGAGGAGCGAAAAAAATAAAAGGTTGAGCATGTTTGGAAGTGAGGTCAAAATTCCTTTTTCTCTTGCAAAATCACTTTCCAATGTTGGGATTGAATAAAATTGATTTTGGAATAATTAGTTGCTATGTGATTTTTGTTGAGGTGATTGACTAGGAATTAGTCTAAAAAATGGATATCTAGTTCATTTTTGTTAAAATATTTTCAGGTTAGTTAGTTGTGAAACTATTAGTTTATTTAAATCATTGACCAAGAGATGTCATCATGAAAAAAGCACATAATAACTAGATTAAATGAGATATATGTTTTGAATTTTCTTTTGATATTTATTATACACATCTTTCCTACTCATATCAATCCTGCATAGAACAGTTTAATAATAAAACATATGAAAAAAATTAATTAATAAAAAAATATACTGATGATAACTATTTAGTTAAATAAGTTCTCATATAGAAAACTCTTTTTAGTAATTTGATAATTCTAAAATTACTTTTAGAGCCAAACATAGTAATTTAAAATTATTTTTAAATATAAGGAAATCACTTTTACAAGTTTGGAACGAAATATAAATATGATTGTATATGTAACTAAATTTCTTTTTCTAAAATCACTACTTCAACCATCACTATCAAACATGGCTTTAGAATAATTGATTTTACCAAATCCAGAACTAACATAAGAGGGAGCAATGAATTATTTAGTTTCAGGAAAGAATTTTGTACCTGATATTGACAATTCAAACAGCAAACTTGTTTCTAAAAGAACAAAAACGTTTTAACTTTTATAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGTCTGATCATCAAAAGATTGATAACAACCCACTCAAAAACCCGATCTCGACAACGACATGAAGCAAAATCAAGAGGACGACACTCAGGAAATGGAAAACGAAGAGGGACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGAAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACGTTAGAGCGAAGGGAAATGTCTACAAAAACAAGCGTGTGCTAATGGAAAGCATTCACAAAGTCAAGGCTGAAAAAGCAACAGAAAAATCACTTTCTGTTCAAGTTGAGGCCAAGAGAGCAATAAATAGTAAGACAATAAGGTTGTAA

mRNA sequence

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGTGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCCTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGTCTGATCATCAAAAGATTGATAACAACCCACTCAAAAACCCGATCTCGACAACGACATGAAGCAAAATCAAGAGGACGACACTCAGGAAATGGAAAACGAAGAGGGACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGAAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACGTTAGAGCGAAGGGAAATGTCTACAAAAACAAGCGTGTGCTAATGGAAAGCATTCACAAAGTCAAGGCTGAAAAAGCAACAGAAAAATCACTTTCTGTTCAAGTTGAGGCCAAGAGAGCAATAAATAGTAAGACAATAAGGTTGTAA

Coding sequence (CDS)

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGTGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCCTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGTCTGATCATCAAAAGATTGATAACAACCCACTCAAAAACCCGATCTCGACAACGACATGAAGCAAAATCAAGAGGACGACACTCAGGAAATGGAAAACGAAGAGGGACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGGGTCCTCCGAAGATTACTGCGAAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTACGTTAGAGCGAAGGGAAATGTCTACAAAAACAAGCGTGTGCTAATGGAAAGCATTCACAAAGTCAAGGCTGAAAAAGCAACAGAAAAATCACTTTCTGTTCAAGTTGAGGCCAAGAGAGCAATAAATAGTAAGACAATAAGGTTGTAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSKTRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAINSKTIRL

Homology

[Close]

BLAST of ClCG06G014250 vs. Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-63
Identity = 119/166 (71.69%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAIN 167
           H MY++ KGNV+KNKRVLMESIHK KAEKA EK+LS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of ClCG06G014250 vs. Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 5.2e-63
Identity = 119/166 (71.69%), Postives = 140/166 (84.34%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAIN 167
           H MY+R KGNV+KNKRVLMESIHK KAEKA EK+LS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of ClCG06G014250 vs. Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.8e-61
Identity = 114/166 (68.67%), Postives = 139/166 (83.73%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R  +EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAIN 167
           H MY++ KGNV+KNKRVLMESIHK+KAEKA EK+L+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of ClCG06G014250 vs. Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 7.2e-57
Identity = 105/164 (64.02%), Postives = 132/164 (80.49%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDGLIIK+ +T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H +Y+RAKGNV+KNKR+LME IHK+KA++A +K LS Q EA+R+
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRS 164

[Close]

BLAST of ClCG06G014250 vs. Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 9.4e-57
Identity = 105/163 (64.42%), Postives = 130/163 (79.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR  IRKL+KDGLIIK+ +T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
            R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKR 164
           H +Y+RAKGNV+KNKR+LME IHK+KA+KA +K L+ Q EA+R
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARR 163

[Close]

BLAST of ClCG06G014250 vs. TrEMBL
Match: A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 2.9e-81
Identity = 155/170 (91.18%), Postives = 164/170 (96.47%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +RSRQRH+AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAINSKTI 171
           HQMY+R KGNVYKNKRVLMESIHKV AEKA EK+LS+QVEAKRAINSK I
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAI 170

[Close]

BLAST of ClCG06G014250 vs. TrEMBL
Match: A0A0E0KDI4_ORYPU (Ribosomal protein L19 OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.7e-63
Identity = 122/164 (74.39%), Postives = 141/164 (85.98%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+ HEAK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H MY++ KGN++KNKRVLMESIHK KAEKA EK+LS Q EAKRA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164

[Close]

BLAST of ClCG06G014250 vs. TrEMBL
Match: A0A0D9Z714_9ORYZ (Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.7e-63
Identity = 122/164 (74.39%), Postives = 141/164 (85.98%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+ HEAK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H MY++ KGN++KNKRVLMESIHK KAEKA EK+LS Q EAKRA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164

[Close]

BLAST of ClCG06G014250 vs. TrEMBL
Match: A2XGG9_ORYSI (Ribosomal protein L19 OS=Oryza sativa subsp. indica GN=OsI_11477 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.7e-63
Identity = 122/164 (74.39%), Postives = 141/164 (85.98%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+ HEAK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H MY++ KGN++KNKRVLMESIHK KAEKA EK+LS Q EAKRA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164

[Close]

BLAST of ClCG06G014250 vs. TrEMBL
Match: A0A0D9Z9W3_9ORYZ (Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.7e-63
Identity = 122/164 (74.39%), Postives = 141/164 (85.98%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+ HEAK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H MY++ KGN++KNKRVLMESIHK KAEKA EK+LS Q EAKRA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164

[Close]

BLAST of ClCG06G014250 vs. TAIR10
Match: AT4G02230.1 (AT4G02230.1 Ribosomal protein L19e family protein)

HSP 1 Score: 242.7 bits (618), Expect = 1.7e-64
Identity = 119/166 (71.69%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAIN 167
           H MY++ KGNV+KNKRVLMESIHK KAEKA EK+LS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of ClCG06G014250 vs. TAIR10
Match: AT1G02780.1 (AT1G02780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 241.9 bits (616), Expect = 2.9e-64
Identity = 119/166 (71.69%), Postives = 140/166 (84.34%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAIN 167
           H MY+R KGNV+KNKRVLMESIHK KAEKA EK+LS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of ClCG06G014250 vs. TAIR10
Match: AT3G16780.1 (AT3G16780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 236.1 bits (601), Expect = 1.6e-62
Identity = 114/166 (68.67%), Postives = 139/166 (83.73%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R  +EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAIN 167
           H MY++ KGNV+KNKRVLMESIHK+KAEKA EK+L+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of ClCG06G014250 vs. TAIR10
Match: AT4G16030.1 (AT4G16030.1 Ribosomal protein L19e family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 44/118 (37.29%), Postives = 71/118 (60.17%), Query Frame = 1


Query: 54  LITTHSKTRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECE 113
           +++ H  +RSR R +     RH+G GK       R+  +L   RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSRARRKC----RHTGYGKDTMEALRRIMKRLT--RRLKMLKRLLKKFCWNK 60

Query: 114 KIDKHIY-HQMYVRAKGNVYKNKRVLMESIHKVKAEK---ATEKSLSVQVEAKRAINS 168
           KIDK +Y H M+++ KG VYKNK VLMES+HK   E+    +E  L+++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of ClCG06G014250 vs. NCBI nr
Match: gi|659107003|ref|XP_008453495.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 313.9 bits (803), Expect = 1.7e-82
Identity = 157/170 (92.35%), Postives = 164/170 (96.47%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +RSRQRH+AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAINSKTI 171
           HQMY+R KGNVYKNKRVLMESIHKVK EKA EK+LS+QVEAKRAINSK I
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAI 170

[Close]

BLAST of ClCG06G014250 vs. NCBI nr
Match: gi|449439153|ref|XP_004137352.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 4.2e-81
Identity = 155/170 (91.18%), Postives = 164/170 (96.47%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +RSRQRH+AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRAINSKTI 171
           HQMY+R KGNVYKNKRVLMESIHKV AEKA EK+LS+QVEAKRAINSK I
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAI 170

[Close]

BLAST of ClCG06G014250 vs. NCBI nr
Match: gi|1002256594|ref|XP_015632604.1| (PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group])

HSP 1 Score: 248.8 bits (634), Expect = 6.8e-63
Identity = 122/164 (74.39%), Postives = 141/164 (85.98%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+ HEAK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H MY++ KGN++KNKRVLMESIHK KAEKA EK+LS Q EAKRA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164

[Close]

BLAST of ClCG06G014250 vs. NCBI nr
Match: gi|969812439|ref|NP_001148813.2| (60S ribosomal protein L19-3 [Zea mays])

HSP 1 Score: 248.4 bits (633), Expect = 8.8e-63
Identity = 121/164 (73.78%), Postives = 142/164 (86.59%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPQKVHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+ HEAK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H MY++ KGN++KNKRVLMESIHK KAEKA EK+LS Q EAKRA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164

[Close]

BLAST of ClCG06G014250 vs. NCBI nr
Match: gi|414881543|tpg|DAA58674.1| (TPA: putative 60S ribosomal protein L19-3 family protein [Zea mays])

HSP 1 Score: 248.4 bits (633), Expect = 8.8e-63
Identity = 121/164 (73.78%), Postives = 142/164 (86.59%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLITTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPQKVHSR 60

Query: 61  TRSRQRHEAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R+R+ HEAK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYVRAKGNVYKNKRVLMESIHKVKAEKATEKSLSVQVEAKRA 165
           H MY++ KGN++KNKRVLMESIHK KAEKA EK+LS Q EAKRA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA 164

The following BLAST results are available for this feature:

BLAST of ClCG06G014250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL193_ARATH	3.0e-63	71.69	60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3	[more]
RL191_ARATH	5.2e-63	71.69	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1	[more]
RL192_ARATH	2.8e-61	68.67	60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	[more]
RL19_ICTPU	7.2e-57	64.02	60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	[more]
RL19_DANRE	9.4e-57	64.42	60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1	[more]

BLAST of ClCG06G014250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8_CUCSA	2.9e-81	91.18	Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1	[more]
A0A0E0KDI4_ORYPU	4.7e-63	74.39	Ribosomal protein L19 OS=Oryza punctata PE=3 SV=1	[more]
A0A0D9Z714_9ORYZ	4.7e-63	74.39	Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1	[more]
A2XGG9_ORYSI	4.7e-63	74.39	Ribosomal protein L19 OS=Oryza sativa subsp. indica GN=OsI_11477 PE=3 SV=1	[more]
A0A0D9Z9W3_9ORYZ	4.7e-63	74.39	Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1	[more]

BLAST of ClCG06G014250 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02230.1	1.7e-64	71.69	Ribosomal protein L19e family protein	[more]
AT1G02780.1	2.9e-64	71.69	Ribosomal protein L19e family protein	[more]
AT3G16780.1	1.6e-62	68.67	Ribosomal protein L19e family protein	[more]
AT4G16030.1	1.8e-13	37.29	Ribosomal protein L19e family protein	[more]

BLAST of ClCG06G014250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107003\|ref\|XP_008453495.1\|	1.7e-82	92.35	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
gi\|449439153\|ref\|XP_004137352.1\|	4.2e-81	91.18	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus]	[more]
gi\|1002256594\|ref\|XP_015632604.1\|	6.8e-63	74.39	PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group]	[more]
gi\|969812439\|ref\|NP_001148813.2\|	8.8e-63	73.78	60S ribosomal protein L19-3 [Zea mays]	[more]
gi\|414881543\|tpg\|DAA58674.1\|	8.8e-63	73.78	TPA: putative 60S ribosomal protein L19-3 family protein [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000196	Ribosomal_L19/L19e
IPR015972	Ribosomal_L19/L19e_dom1
IPR015974	Ribosomal protein L19/L19e, domain 3
IPR023638	Ribosomal_L19/L19e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG06G014250.1	ClCG06G014250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e domain	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 score: 1.2
IPR000196	Ribosomal protein L19/L19e domain	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 score: 4.3
IPR000196	Ribosomal protein L19/L19e domain	unknown	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144 score: 4.32
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..53 score: 1.4
IPR015974	Ribosomal protein L19/L19e, domain 3	GENE3D	G3DSA:1.10.1200.60		coord: 90..149 score: 1.9
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26 scor
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..164 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG06G014250	Csa1G025150	Cucumber (Chinese Long) v2	cuwcgB082
ClCG06G014250	MELO3C017364	Melon (DHL92) v3.5.1	mewcgB254
ClCG06G014250	Cla018917	Watermelon (97103) v1	wcgwmB344
ClCG06G014250	Cla97C06G123710	Watermelon (97103) v2	wcgwmbB273
ClCG06G014250	Bhi02G000109	Wax gourd	wcgwgoB548
ClCG06G014250	CSPI01G04420	Wild cucumber (PI 183967)	cpiwcgB084
ClCG06G014250	Cucsa.111630	Cucumber (Gy14) v1	cgywcgB165
ClCG06G014250	CmaCh10G003330	Cucurbita maxima (Rimu)	cmawcgB071
ClCG06G014250	CmoCh10G003590	Cucurbita moschata (Rifu)	cmowcgB064
ClCG06G014250	Lsi06G012730	Bottle gourd (USVL1VR-Ls)	lsiwcgB372
ClCG06G014250	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cpewcgB335
ClCG06G014250	MELO3C017364.2	Melon (DHL92) v3.6.1	medwcgB246
ClCG06G014250	Carg15182	Silver-seed gourd	carwcgB0764
ClCG06G014250	CsaV3_1G004430	Cucumber (Chinese Long) v3	cucwcgB089

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG06G014250	Silver-seed gourd	carwcgB0581
ClCG06G014250	Cucurbita maxima (Rimu)	cmawcgB135
ClCG06G014250	Cucurbita moschata (Rifu)	cmowcgB119
ClCG06G014250	Cucurbita pepo (Zucchini)	cpewcgB616
ClCG06G014250	Cucumber (Gy14) v2	cgybwcgB079