Csa1G025150 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G025150
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Ribosomal protein L19; contains IPR000196 (Ribosomal protein L19/L19e domain), IPR023638 (Ribosomal protein L19/L19e conserved site)
Location	Chr1 : 2748914 .. 2750996 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGTAAGCACTTCAACTTTATCTAGAATTGTTGCATCTTCTCTTTTCTTTCTCTTCGTGTTAACTTGAAGAGTCATGAAGTTTAGTTGTAAGTACATAACCACTTAAAGAGAACAGTGAGAAAATCAAAAGTAAGGCAGGTTTGATCAGTCATCATTTTGGTGTTTGATGTTGAATATTATTGATTTTAGAAAATTCTAAAAACATTTTAAAATTGCGTTTTCTGTTGAAGTGCTAGATGCATGTTTTGAAATATTTATTATAAACGTTTTCTTACATACATATCAATCATACATATAAAATTTTCATAATAAAAAAATTAGAGAAAAAGTATAGTTATCACAATTATTTAGTTAAATAAGTTCTCAGATAGAAACTTCCATTTGATACTATTTTTGTTTTCAAAAAATAAACCTATAGACAATACTTTCCGTCTCTCTCTTTCTTCCTTTGTTATCTATAATAAATATTACCAAAATATCTTCCTTTGCTATCTATATTAAATATTACCAATTGTTTAAAAAACCAAGCCAAAACTTGATACTAAAAAAAAAAGTAACTTTTTGCTTTTGAAATTTAGCTAGGAATTCAACCACACAAAGAGGATATAGGCTTAGTTTTGAAAAACAAAAACAAATAACGAAATAGTTACAAACTAGACCTTACTGATTCCATAATTCTAAACTCGTTTTTAAAACCAAACATAACAACTCAAGATCATATTTAAATATATAAAAATCACTTTTAAGGGCTTGAAACCAAACATTAATATGATTATATAAAAATCAATAATCTTTTTTCTAAAATCATATTTCAATCATCACTCCCAAAACATACCCTTAGAATAATTGATTCCACTGGATGCAGATTTCACACAAGAGTGGGCAATTAAATCTTTAGTTTCAGAAAAGAATTTTGTACCCCTGATATTAACAATTCAAGTAGCAAAATCTTTTCTAAGAGAACAAGGATATTTTAACTAAAAAGCATATGTAACTATCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCCATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGAAGCAGAAAGATTACTCTACCATTAAGGCTCTGGCTGTGACATAATTCACACATTCAGGGTCTGTCTTCCTCATAGCCATATAGGGGAAGCTCAATAAAACAAATGGTTAGATAAAAACTGTATAATCGTCCATTAATATTTTTCAACTTCATATGTATTTGTATGTTTCACATGAGTTTTATGATGACAAATCTAACAGAGTGAACAGTAATTGGTACCTACAGATATTCAATGATGAGAACCTATGCTTTAAACAGCATTCATGTGCAATGAAAAGGATATAACATCCTATTTAGAACCTCATTTTCAGATATTTGGCCAATAGATGGTTAGCAGGTTTTACAATATGAAAATGGAACAGTGCTTTCTTGATTGTTCCATCCAAGGGAATGTTTTACACGTTACCCAACTGAATGAAGAATAACATCCATTCCAAATGCAAGCTTCCTCATGAAGGACGATCAGAGTTCAAAATACCTTCACTTCGCTGCATAAAAAGGCTACAAGGCAAACCATTATCACATAATGGAATTGGAAACAACCAAAACACATTCTAAAGAA

mRNA sequence

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCCATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Coding sequence (CDS)

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCCATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Protein sequence

MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIYHQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL*

Homology

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BLAST of Csa1G025150 vs. Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 244.6 bits (623), Expect = 8.1e-64
Identity = 121/166 (72.89%), Postives = 142/166 (85.54%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of Csa1G025150 vs. Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.8e-63
Identity = 119/166 (71.69%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of Csa1G025150 vs. Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.7e-61
Identity = 115/166 (69.28%), Postives = 140/166 (84.34%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+ AEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of Csa1G025150 vs. Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-55
Identity = 103/169 (60.95%), Postives = 132/169 (78.11%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR +IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+ A++A +K LS Q EA+R+   +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREA 169

[Close]

BLAST of Csa1G025150 vs. Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 4.0e-55
Identity = 103/169 (60.95%), Postives = 130/169 (76.92%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR  IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKA 170
           H +Y+R KGNV+KNKR+LME IHK+ A+KA +K L+ Q EA+R    +A
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREA 169

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BLAST of Csa1G025150 vs. TrEMBL
Match: A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.1e-90
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Csa1G025150 vs. TrEMBL
Match: S8E649_9LAMI (Ribosomal protein L19 (Fragment) OS=Genlisea aurea GN=M569_03471 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 121/166 (72.89%), Postives = 143/166 (86.14%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS LNCGK +VWLDP+E   IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLNCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+  +AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of Csa1G025150 vs. TrEMBL
Match: I1PB45_ORYGL (Ribosomal protein L19 OS=Oryza glaberrima PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 123/169 (72.78%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK  AEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of Csa1G025150 vs. TrEMBL
Match: A0A0D9Z9W3_9ORYZ (Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 123/169 (72.78%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK  AEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of Csa1G025150 vs. TrEMBL
Match: A0A0E0KDI4_ORYPU (Ribosomal protein L19 OS=Oryza punctata PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.0e-62
Identity = 123/169 (72.78%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK  AEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of Csa1G025150 vs. TAIR10
Match: AT4G02230.1 (AT4G02230.1 Ribosomal protein L19e family protein)

HSP 1 Score: 244.6 bits (623), Expect = 4.5e-65
Identity = 121/166 (72.89%), Postives = 142/166 (85.54%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of Csa1G025150 vs. TAIR10
Match: AT1G02780.1 (AT1G02780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 241.5 bits (615), Expect = 3.9e-64
Identity = 119/166 (71.69%), Postives = 141/166 (84.94%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of Csa1G025150 vs. TAIR10
Match: AT3G16780.1 (AT3G16780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 236.9 bits (603), Expect = 9.5e-63
Identity = 115/166 (69.28%), Postives = 140/166 (84.34%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R  ++AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+ AEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of Csa1G025150 vs. TAIR10
Match: AT4G16030.1 (AT4G16030.1 Ribosomal protein L19e family protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-13
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 1


Query: 54  LTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYE 113
           + + H  SRSR R +     RH+G GK       R+  +L   RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSRARRKC----RHTGYGKDTMEALRRIMKRLT--RRLKMLKRLLKKFCWNK 60

Query: 114 KIDRHIY-HQMYIRVKGNVYKNKRVLMESIHKVHAEKAL---EKTLSIQVEAKRAINS 168
           KID+ +Y H M+++VKG VYKNK VLMES+HK   E+     E  L+++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of Csa1G025150 vs. NCBI nr
Match: gi|449439153|ref|XP_004137352.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 2.9e-90
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Csa1G025150 vs. NCBI nr
Match: gi|659107003|ref|XP_008453495.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 1.4e-87
Identity = 169/173 (97.69%), Postives = 171/173 (98.84%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV  EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Csa1G025150 vs. NCBI nr
Match: gi|727419957|ref|XP_010429437.1| (PREDICTED: 60S ribosomal protein L19-3-like [Camelina sativa])

HSP 1 Score: 246.9 bits (629), Expect = 2.6e-62
Identity = 122/166 (73.49%), Postives = 144/166 (86.75%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRL+AS L CGK++VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLSASVLKCGKKKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+RQ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRD +KIDRH+Y
Sbjct: 61  SRARQLNVAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRDTKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNVYKNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVYKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of Csa1G025150 vs. NCBI nr
Match: gi|1002256594|ref|XP_015632604.1| (PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group])

HSP 1 Score: 245.7 bits (626), Expect = 5.8e-62
Identity = 123/169 (72.78%), Postives = 144/169 (85.21%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDP+E   IS+ANSR +IRKL+KDG IIK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+ H+AK +GRHSG GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKA 170
           H MY++VKGN++KNKRVLMESIHK  AEKA EKTLS Q EAKRA  SKA
Sbjct: 121 HDMYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRA-KSKA 168

[Close]

BLAST of Csa1G025150 vs. NCBI nr
Match: gi|527205415|gb|EPS71288.1| (hypothetical protein M569_03471, partial [Genlisea aurea])

HSP 1 Score: 245.7 bits (626), Expect = 5.8e-62
Identity = 121/166 (72.89%), Postives = 143/166 (86.14%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS LNCGK +VWLDP+E   IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLNCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120
           SR+R+  +AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYR+ +KID+H+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

The following BLAST results are available for this feature:

BLAST of Csa1G025150 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL193_ARATH	8.1e-64	72.89	60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3	[more]
RL191_ARATH	6.8e-63	71.69	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1	[more]
RL192_ARATH	1.7e-61	69.28	60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	[more]
RL19_ICTPU	2.4e-55	60.95	60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	[more]
RL19_DANRE	4.0e-55	60.95	60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1	[more]

BLAST of Csa1G025150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8_CUCSA	2.1e-90	100.00	Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1	[more]
S8E649_9LAMI	4.0e-62	72.89	Ribosomal protein L19 (Fragment) OS=Genlisea aurea GN=M569_03471 PE=3 SV=1	[more]
I1PB45_ORYGL	4.0e-62	72.78	Ribosomal protein L19 OS=Oryza glaberrima PE=3 SV=1	[more]
A0A0D9Z9W3_9ORYZ	4.0e-62	72.78	Ribosomal protein L19 OS=Oryza glumipatula PE=3 SV=1	[more]
A0A0E0KDI4_ORYPU	4.0e-62	72.78	Ribosomal protein L19 OS=Oryza punctata PE=3 SV=1	[more]

BLAST of Csa1G025150 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02230.1	4.5e-65	72.89	Ribosomal protein L19e family protein	[more]
AT1G02780.1	3.9e-64	71.69	Ribosomal protein L19e family protein	[more]
AT3G16780.1	9.5e-63	69.28	Ribosomal protein L19e family protein	[more]
AT4G16030.1	2.4e-13	38.14	Ribosomal protein L19e family protein	[more]

BLAST of Csa1G025150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439153\|ref\|XP_004137352.1\|	2.9e-90	100.00	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus]	[more]
gi\|659107003\|ref\|XP_008453495.1\|	1.4e-87	97.69	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
gi\|727419957\|ref\|XP_010429437.1\|	2.6e-62	73.49	PREDICTED: 60S ribosomal protein L19-3-like [Camelina sativa]	[more]
gi\|1002256594\|ref\|XP_015632604.1\|	5.8e-62	72.78	PREDICTED: 60S ribosomal protein L19-1 [Oryza sativa Japonica Group]	[more]
gi\|527205415\|gb\|EPS71288.1\|	5.8e-62	72.89	hypothetical protein M569_03471, partial [Genlisea aurea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000196	Ribosomal_L19/L19e
IPR015972	Ribosomal_L19/L19e_dom1
IPR015974	Ribosomal protein L19/L19e, domain 3
IPR023638	Ribosomal_L19/L19e_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0042788	polysomal ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU124917	cucumber EST collection version 3.0	transcribed_cluster
CU142405	cucumber EST collection version 3.0	transcribed_cluster
CU147166	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G025150.1	Csa1G025150.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU142405	CU142405	transcribed_cluster
CU124917	CU124917	transcribed_cluster
CU147166	CU147166	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e domain	PFAM	PF01280	Ribosomal_L19e	coord: 4..144 score: 2.2
IPR000196	Ribosomal protein L19/L19e domain	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 score: 9.7
IPR000196	Ribosomal protein L19/L19e domain	unknown	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144 score: 1.19
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..53 score: 4.8
IPR015974	Ribosomal protein L19/L19e, domain 3	GENE3D	G3DSA:1.10.1200.60		coord: 90..149 score: 2.1
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26 scor
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..164 score: 6.3E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G025150	Cla018917	Watermelon (97103) v1	cuwmB095
Csa1G025150	ClCG06G014250	Watermelon (Charleston Gray)	cuwcgB082
Csa1G025150	Lsi06G012730	Bottle gourd (USVL1VR-Ls)	culsiB071
Csa1G025150	MELO3C017364.2	Melon (DHL92) v3.6.1	cumedB047
Csa1G025150	Cla97C06G123710	Watermelon (97103) v2	cuwmbB079
Csa1G025150	Bhi02G000109	Wax gourd	cuwgoB077
Csa1G025150	CmaCh10G003330	Cucurbita maxima (Rimu)	cmacuB050
Csa1G025150	CmoCh10G003590	Cucurbita moschata (Rifu)	cmocuB039
Csa1G025150	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cpecuB363
Csa1G025150	CsGy1G004340	Cucumber (Gy14) v2	cgybcuB001
Csa1G025150	Carg15182	Silver-seed gourd	carcuB0801

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G025150	Cucurbita pepo (Zucchini)	cpecuB654
Csa1G025150	Silver-seed gourd	carcuB0622
Csa1G025150	Cucumber (Gy14) v1	cgycuB137
Csa1G025150	Cucurbita maxima (Rimu)	cmacuB087
Csa1G025150	Cucurbita moschata (Rifu)	cmocuB076
Csa1G025150	Melon (DHL92) v3.5.1	cumeB055