CsGy1G004340 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G004340
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Ribosomal protein L19
Location	Chr1 : 2746212 .. 2747726 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGTAAGCACTTCAACTTTATCTAGAATTGTTGCATCTTCTCTTTTCTTTCTCTTCGTGTTAACTTGAAGAGTCATGAAGTTTAGTTGTAAGTACATAACCACTTAAAGAGAACAGTGAGAAAATCAAAAGTAAGGCAGGTTTGATCAGTCATCATTTTGGTGTTTGATGTTGAATATTATTGATTTTAGAAAATTCTAAAAACATTTTAAAATTGCGTTTTCTGTTGAAGTGCTAGATGCATGTTTTGAAATATTTATTATAAACGTTTTCTTACATACATATCAATCATACATATAAAATTTTCATAATAAAAAAATTAGAGAAAAAGTATAGTTATCACAATTATTTAGTTAAATAAGTTCTCAGATAGAAACTTCCATTTGATACTATTTTTGTTTTCAAAAAATAAACCTATAGACAATACTTTCCATCTCTCTCTTTCTTCCTTTGTTATCTATAATAAATATTACCAAAATATCTTCCTTTGCGATCTATATTAAATATTACCAATTGTTTAAAAAACCAAGCCAAAACTTGAAACTAAAAAAAAAAGTAACTTTTTTCTTTTGAAACTTAGCTAGGAATTCAACCACACAAAGAGGATATAGGCTTAGTTTTGAAAAACAAAAACAAATAACGAAATAGTTACAAACTAGACCTTACTGATTCCATAATTCTAAACTCGTTTTTAAAACCAATCATAACTCAAGATCATATTTAAATATATAAAAATCACTTTTAGGGGCTTGAAACCAAACATTAATATGATTATATAAAAATCAATAATCTTTTTTCTAAAATCATATTTCAATCATCACTCCCAAAACATACCCTTAGATTGATTCCACTGGATGCAGATTTCACACAAGAGTGGGCAATTAAATCTTTAGTTTCAGAAAAGAATTTTGTACCCCTGATATTAACAATTCAAGTAGCAAAATCTTTTCTAAGAGAACAAGGATATTTTAACTAAAAAGCATATGTAACTATCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCAAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

mRNA sequence

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCAAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Coding sequence (CDS)

ATGGTGTCTCTCACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCAACTGTGGCAAACGTCGAGTATGGCTTGATCCGGACGAGACCACCACCATCTCCTTGGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCCTAATCATCAAAAGATTGACAACAACCCACTCAAAATCTCGATCTCGACAACGCCATCAAGCAAAATCAAGAGGACGTCACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCAAAAGTACAGAGACTATGAGAAGATAGATAGGCATATTTATCATCAAATGTACATCAGAGTGAAGGGAAACGTCTACAAAAACAAGCGTGTTCTAATGGAAAGTATTCACAAAGTCAATGCTGAAAAAGCATTAGAAAAAACACTTTCTATTCAGGTGGAGGCCAAGAGAGCAATAAATAGTAAAGCTATAATAAGATTGTGA

Protein sequence

MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSKSRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIYHQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL

Homology

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BLAST of CsGy1G004340 vs. NCBI nr
Match: XP_004137352.1 (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus] >KGN63882.1 hypothetical protein Csa_1G025150 [Cucumis sativus])

HSP 1 Score: 278.1 bits (710), Expect = 2.0e-71
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV+AEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340 vs. NCBI nr
Match: XP_008453495.1 (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 272.3 bits (695), Expect = 1.1e-69
Identity = 168/173 (97.11%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV  EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

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BLAST of CsGy1G004340 vs. NCBI nr
Match: XP_023515875.1 (60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 1.0e-59
Identity = 131/171 (76.61%), Postives = 141/171 (82.46%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ET TISLANSRMSIRKLIKDGLIIKR+TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCTISLANSRMSIRKLIKDGLIIKRMTTIHSK 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
                               RRGTKEARLPTKLLWMRRMRVLRRLL+KYR+ EKID+HIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAII 172
           HQMY RVKGNVYKNKRVLME+IHKV +E A E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEIASERTLSAQVEAKRARNSKATV 171

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BLAST of CsGy1G004340 vs. NCBI nr
Match: XP_022921592.1 (60S ribosomal protein L19-3-like [Cucurbita moschata])

HSP 1 Score: 238.0 bits (606), Expect = 2.3e-59
Identity = 130/171 (76.02%), Postives = 140/171 (81.87%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKR+VWLDP+ET TISLANSRMSIRKLIKDG IIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRQVWLDPNETCTISLANSRMSIRKLIKDGFIIKRTTTIHSK 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
                               RRGTKEARLPTKLLWMRRMRVLRRLL+KYR+ EKID+HIY
Sbjct: 61  FRSRQSHEAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAII 172
           HQMY RVKGNVYKNKRVLME+IHKV +EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HQMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

[Close]

BLAST of CsGy1G004340 vs. NCBI nr
Match: XP_022988450.1 (60S ribosomal protein L19-1-like [Cucurbita maxima])

HSP 1 Score: 237.7 bits (605), Expect = 3.0e-59
Identity = 129/171 (75.44%), Postives = 140/171 (81.87%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ET  ISLANSRMSIRKLIKDGLIIKR TT HSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETCNISLANSRMSIRKLIKDGLIIKRTTTIHSK 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
                               RRGTKEARLPTKLLWMRRMR+LRRLL+KYR+ EKID+HIY
Sbjct: 61  FRSRQSREAKSRGRHSGYGKRRGTKEARLPTKLLWMRRMRILRRLLRKYRECEKIDKHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAII 172
           H+MY RVKGNVYKNKRVLME+IHKV +EKA E+TLS QVEAKRA NSKA +
Sbjct: 121 HEMYTRVKGNVYKNKRVLMENIHKVKSEKASERTLSAQVEAKRARNSKATV 171

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BLAST of CsGy1G004340 vs. TAIR10
Match: AT4G02230.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 204.1 bits (518), Expect = 6.8e-53
Identity = 109/166 (65.66%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

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BLAST of CsGy1G004340 vs. TAIR10
Match: AT1G02780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-52
Identity = 108/166 (65.06%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340 vs. TAIR10
Match: AT3G16780.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 197.6 bits (501), Expect = 6.3e-51
Identity = 104/166 (62.65%), Postives = 126/166 (75.90%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+ AEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of CsGy1G004340 vs. TAIR10
Match: AT4G16030.1 (Ribosomal protein L19e family protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.2e-04
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 113 EKIDRHI-YHQMYIRVKGNVYKNKRVLMESIHKVNAEKAL---EKTLSIQVEAKRAINS 168
           +KID+ + YH M+++VKG VYKNK VLMES+HK + E+     E  L+++ E ++  ++
Sbjct: 54  KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

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BLAST of CsGy1G004340 vs. Swiss-Prot
Match: sp|P49693|RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.2e-51
Identity = 109/166 (65.66%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340 vs. Swiss-Prot
Match: sp|Q9SRX2|RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.7e-51
Identity = 108/166 (65.06%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDP+E++ IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY+RVKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340 vs. Swiss-Prot
Match: sp|Q9LUQ6|RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-49
Identity = 104/166 (62.65%), Postives = 126/166 (75.90%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDP+E+  IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRRMRVLRR L KYR+ +KIDRH+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK+ AEKA EKTL+ Q EAKR  N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKN 166

[Close]

BLAST of CsGy1G004340 vs. Swiss-Prot
Match: sp|Q90YU8|RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 92/164 (56.10%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR +IRKL+KDGLIIK+  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           +                   R+GT  AR+P KL WMRRMR+LRRLL++YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRA 165
           H +Y+R KGNV+KNKR+LME IHK+ A++A +K LS Q EA+R+
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRS 164

[Close]

BLAST of CsGy1G004340 vs. Swiss-Prot
Match: sp|Q7ZYS1|RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis OX=8355 GN=rpl19 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.5e-44
Identity = 91/164 (55.49%), Postives = 120/164 (73.17%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           M  L LQKRLA+S L CGK++VWLDP+ET  I+ ANSR  IRKL+KDGLII++  T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           +                   R+GT  AR+P KL WMRRMR+LRRLL++YR+ +KIDRH+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRA 165
           H +Y++VKGNV+KNKR+LME IHK+ A+KA +K L+ Q EA+R+
Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRS 164

[Close]

BLAST of CsGy1G004340 vs. TrEMBL
Match: tr|A0A0A0LSW8|A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.3e-71
Identity = 171/173 (98.84%), Postives = 173/173 (100.00%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV+AEKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340 vs. TrEMBL
Match: tr|A0A1S3BVU0|A0A1S3BVU0_CUCME (Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 7.4e-70
Identity = 168/173 (97.11%), Postives = 171/173 (98.84%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLL+KYRDYEKIDRHIY
Sbjct: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKAIIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV  EKALEKTLSIQVEAKRAINSKAIIRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of CsGy1G004340 vs. TrEMBL
Match: tr|R0FC54|R0FC54_9BRAS (Ribosomal protein L19 OS=Capsella rubella OX=81985 GN=CARUB_v10003129mg PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.1e-49
Identity = 110/166 (66.27%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGKR+VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNV+KNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340 vs. TrEMBL
Match: tr|A0A1J3EDK3|A0A1J3EDK3_NOCCA (Ribosomal protein L19 OS=Noccaea caerulescens OX=107243 GN=LC_TR11600_c0_g1_i1_g.40789 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.4e-49
Identity = 109/166 (65.66%), Postives = 129/166 (77.71%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS L CGK++VWLDP+E + IS+ANSR +IRKL+KDG II++ T  HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKKKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   R+GT+EARLPTK+LWMRR+RVLRRLL+KYR+ +KIDRH+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRLRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAIN 167
           H MY++VKGNVYKNKRVLMESIHK  AEKA EKTLS Q EAKRA N
Sbjct: 121 HDMYLKVKGNVYKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166

[Close]

BLAST of CsGy1G004340 vs. TrEMBL
Match: tr|A0A199UV46|A0A199UV46_ANACO (Ribosomal protein L19 OS=Ananas comosus OX=4615 GN=ACMD2_23633 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.9e-49
Identity = 110/169 (65.09%), Postives = 131/169 (77.51%), Query Frame = 0


Query: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60
           MVSL LQKRLAAS LNCGK +VWLDP+E + IS+ANSR +IRKL+KDG +IK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLNCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFVIKKPMKIHSR 60

Query: 61  SXXXXXXXXXXXXXXXXXXXRRGTKEARLPTKLLWMRRMRVLRRLLQKYRDYEKIDRHIY 120
           S                   RRGT+EARLPTK+LWMRRMRVLRRLL+KYR+ +KID+H+Y
Sbjct: 61  SRARRAMEAKRKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHLY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVNAEKALEKTLSIQVEAKRAINSKA 170
           H++Y++VKGNVYKNKRVLMESIHK  AEKA EKT+S Q EAKRA  SKA
Sbjct: 121 HELYMKVKGNVYKNKRVLMESIHKSKAEKAREKTISDQFEAKRA-KSKA 168

The following BLAST results are available for this feature:

BLAST of CsGy1G004340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137352.1	2.0e-71	98.84	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus] >KGN63882.1 hypoth...	[more]
XP_008453495.1	1.1e-69	97.11	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
XP_023515875.1	1.0e-59	76.61	60S ribosomal protein L19-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022921592.1	2.3e-59	76.02	60S ribosomal protein L19-3-like [Cucurbita moschata]	[more]
XP_022988450.1	3.0e-59	75.44	60S ribosomal protein L19-1-like [Cucurbita maxima]	[more]

BLAST of CsGy1G004340 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02230.1	6.8e-53	65.66	Ribosomal protein L19e family protein	[more]
AT1G02780.1	1.5e-52	65.06	Ribosomal protein L19e family protein	[more]
AT3G16780.1	6.3e-51	62.65	Ribosomal protein L19e family protein	[more]
AT4G16030.1	1.2e-04	42.37	Ribosomal protein L19e family protein	[more]

BLAST of CsGy1G004340 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P49693\|RL193_ARATH	1.2e-51	65.66	60S ribosomal protein L19-3 OS=Arabidopsis thaliana OX=3702 GN=RPL19C PE=2 SV=3	[more]
sp\|Q9SRX2\|RL191_ARATH	2.7e-51	65.06	60S ribosomal protein L19-1 OS=Arabidopsis thaliana OX=3702 GN=RPL19A PE=2 SV=1	[more]
sp\|Q9LUQ6\|RL192_ARATH	1.1e-49	62.65	60S ribosomal protein L19-2 OS=Arabidopsis thaliana OX=3702 GN=RPL19B PE=2 SV=1	[more]
sp\|Q90YU8\|RL19_ICTPU	1.9e-44	56.10	60S ribosomal protein L19 OS=Ictalurus punctatus OX=7998 GN=rpl19 PE=2 SV=1	[more]
sp\|Q7ZYS1\|RL19_XENLA	5.5e-44	55.49	60S ribosomal protein L19 OS=Xenopus laevis OX=8355 GN=rpl19 PE=2 SV=1	[more]

BLAST of CsGy1G004340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSW8\|A0A0A0LSW8_CUCSA	1.3e-71	98.84	Ribosomal protein L19 OS=Cucumis sativus OX=3659 GN=Csa_1G025150 PE=3 SV=1	[more]
tr\|A0A1S3BVU0\|A0A1S3BVU0_CUCME	7.4e-70	97.11	Ribosomal protein L19 OS=Cucumis melo OX=3656 GN=LOC103494191 PE=3 SV=1	[more]
tr\|R0FC54\|R0FC54_9BRAS	1.1e-49	66.27	Ribosomal protein L19 OS=Capsella rubella OX=81985 GN=CARUB_v10003129mg PE=3 SV=...	[more]
tr\|A0A1J3EDK3\|A0A1J3EDK3_NOCCA	1.4e-49	65.66	Ribosomal protein L19 OS=Noccaea caerulescens OX=107243 GN=LC_TR11600_c0_g1_i1_g...	[more]
tr\|A0A199UV46\|A0A199UV46_ANACO	1.9e-49	65.09	Ribosomal protein L19 OS=Ananas comosus OX=4615 GN=ACMD2_23633 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0022625	cytosolic large ribosomal subunit
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR035970	60S_ribosomal_L19/L19e_sf
IPR033935	Ribosomal_L19_euka
IPR023638	Ribosomal_L19/L19e_CS
IPR015972	Ribosomal_L19/L19e_dom1
IPR000196	Ribosomal_L19/L19e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0042788	polysomal ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G004340.1	CsGy1G004340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 e-value: 2.5E-80 score: 282.9
IPR000196	Ribosomal protein L19/L19e	PFAM	PF01280	Ribosomal_L19e	coord: 4..144 e-value: 2.7E-59 score: 199.2
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..55 e-value: 5.7E-27 score: 95.2
None	No IPR available	GENE3D	G3DSA:1.10.1200.240		coord: 57..172 e-value: 2.7E-46 score: 158.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..79
None	No IPR available	PANTHER	PTHR10722:SF11	60S RIBOSOMAL PROTEIN L19-1-RELATED	coord: 1..167
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..167
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26
IPR033935	Ribosomal protein L19, eukaryotic	CDD	cd01417	Ribosomal_L19e_E	coord: 4..166 e-value: 1.92251E-65 score: 199.499
IPR035970	Ribosomal protein L19/L19e superfamily	SUPERFAMILY	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G004340	Csa1G025150	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G004340	CmaCh10G003330	Cucurbita maxima (Rimu)	cgybcmaB006
CsGy1G004340	CmoCh10G003590	Cucurbita moschata (Rifu)	cgybcmoB007
CsGy1G004340	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cgybcpeB055
CsGy1G004340	CsaV3_1G004430	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G004340	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G004340	Silver-seed gourd	carcgybB0594
CsGy1G004340	Silver-seed gourd	carcgybB0778
CsGy1G004340	Watermelon (97103) v2	cgybwmbB077
CsGy1G004340	Wax gourd	cgybwgoB075
CsGy1G004340	Cucurbita maxima (Rimu)	cgybcmaB029
CsGy1G004340	Cucurbita moschata (Rifu)	cgybcmoB028
CsGy1G004340	Cucurbita pepo (Zucchini)	cgybcpeB127
CsGy1G004340	Bottle gourd (USVL1VR-Ls)	cgyblsiB068
CsGy1G004340	Melon (DHL92) v3.5.1	cgybmeB050
CsGy1G004340	Melon (DHL92) v3.6.1	cgybmedB044
CsGy1G004340	Watermelon (Charleston Gray)	cgybwcgB079
CsGy1G004340	Watermelon (97103) v1	cgybwmB095