Lsi06G012730 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G012730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribosomal protein L19
Location	chr06 : 23317703 .. 23319416 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAGTTTATCTCACGCTCTTTCAATTTTGCTATTGTTCTTTTGGAATCACCCATCAAAAAGAACCACTTCAGTGTAGAGGAGAAGCCACCACAAGCAGCACCAACAATGGTGTCTCTTACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCTTTAGCCAATTCAAGTAAGTACAACAACTTTTCTAGAATTACATCTTTTTTTTTTTTTTTTCTCCTTTCTTTTTCTATGCTAAACTTGATCAATCGTGAAGTTTGCTCAAGAGAAAGAGTGAAGAAAATAAAAGGTTGGACATGTTTGGAAGTGATTTTGACCTGGTCAAAATCTCTTTTTCTCTTGCAAAATCATTTCTCAATGTTTGGGATTGAATAAAATTGATTTTAGAAGAATTAGTTGCTATGTATTTGAGGTGATTGAATAAGAATCAATCCAAAAAATGACTATCTAGTTCATTTTTGTTAAAATATTGTTGGTTAGCTAGTTGTGAAACTATTAATTTTTATTTAAATCATCGGCTAAGAGATGACAAACATTGTTTGTCATGAAACAAATTGCATAATAATTAAGATTAAATAAGATATATGTTTTGAATTTTCTTTTGATATTTATTATACACATTTTTCTTACTCAATATATCAATCATGCATATAAATGTTAAACAATAAAACAAATGAAAAAAATATATTTATCATAACTATTTTGTTAAATAAGTTCTCAAATAGAAAATACTCTTTTTAGTAATTTGATAATTCTAAAATCACTTTTGGAGCCAAACATAATAATTCAAAATCACTTTTAAATATAAATGAAAATCACTTTTAAGAGTTTGAAACCAAATATAAATGTAATTGTATAAAAATCAATTTCCCACAAACAATTGTACCTAAATTTCTTTTTCTAAAATCACTACTTCAACCATCAATATAAAACATGCTTTTAGTATAATTGATTCTACCAAATACAGATTTAACACAAGAGTGAACAATGAATTATTTAGTTTTAGGAAAGAATTTTGTACCTGATATTGACAATTCAAGCAGCAAACTTGTTTCTAAAAGAACAAAAACATTTTAACTAGAAAACATTTTCAACTGTCAGGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGTTGATGACAACCCACTCAAAATCCCGATCTCGACAACGACGTGAAGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAACGTGTGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTGTTCAAGTTGAGGCCAAGAGAGCAATAAATAGTAAATCCACAATAAGGTTGTAAACCAGAAACATTACTCTACCATTACAGGCTCTGGCAGTGACATAATTCACACATTCAGGGCTGTCTTCCTCATGGGGGAAGCTCAATAAAACAGTTGATAGATCATAAGTGTATAATGGTTCCTTTATTTTTACAACTTCATATGTATTTGTA

mRNA sequence

GTCAGTTTATCTCACGCTCTTTCAATTTTGCTATTGTTCTTTTGGAATCACCCATCAAAAAGAACCACTTCAGTGTAGAGGAGAAGCCACCACAAGCAGCACCAACAATGGTGTCTCTTACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCTTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGTTGATGACAACCCACTCAAAATCCCGATCTCGACAACGACGTGAAGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAACGTGTGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTGTTCAAGTTGAGGCCAAGAGAGCAATAAATAGTAAATCCACAATAAGGTTGTAAACCAGAAACATTACTCTACCATTACAGGCTCTGGCAGTGACATAATTCACACATTCAGGGCTGTCTTCCTCATGGGGGAAGCTCAATAAAACAGTTGATAGATCATAAGTGTATAATGGTTCCTTTATTTTTACAACTTCATATGTATTTGTA

Coding sequence (CDS)

ATGGTGTCTCTTACCCTACAAAAGCGGCTTGCCGCCAGCAGCCTCGACTGCGGCAAACGTCGAGTATGGCTTGATCCCAACGAGACCACCACCATCTCTTTAGCCAATTCAAGAATGAGCATCAGAAAGCTCATAAAAGATGGCTTGATCATCAAAAGGTTGATGACAACCCACTCAAAATCCCGATCTCGACAACGACGTGAAGCAAAATCGAGAGGACGACACTCAGGGAATGGAAAACGAAGAGGAACAAAGGAAGCAAGGTTACCTACAAAGCTGCTATGGATGAGAAGAATGAGAGTCCTCCGAAGATTACTGCGCAAATACAGAGAATGTGAGAAGATAGATAAGCATATTTATCATCAAATGTATATTAGAGTGAAGGGAAACGTCTACAAAAACAAACGTGTGCTAATGGAAAGCATTCACAAGGTCAAGGCTGAAAAAGCATTAGAAAAAACACTTTCTGTTCAAGTTGAGGCCAAGAGAGCAATAAATAGTAAATCCACAATAAGGTTGTAA

Protein sequence

MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSKSRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIYHQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL

Homology

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BLAST of Lsi06G012730 vs. Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.5e-59
Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 228.4 bits (581), Expect = 6.0e-59
Identity = 124/172 (72.09%), Postives = 145/172 (84.30%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+RQ   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 5.6e-57
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R   EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. Swiss-Prot
Match: RL19_TETTS (60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) GN=RPL19 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.5e-51
Identity = 109/169 (64.50%), Postives = 136/169 (80.47%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CG++R+WLDPNE++ IS+ANSR SIRKLIKDGL++KR    HS+
Sbjct: 1   MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R   EAK +GRH+G+GKR+GT+ AR+PTK+LWMRR RVLRRLLRKYR  +KIDKH Y
Sbjct: 61  SRARAFLEAKRKGRHTGSGKRKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKS 170
           H+ Y+  KGN+YKNK VL+E+IH  KA+K     L+ Q EA+RA N+ S
Sbjct: 121 HEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQEARRAKNTAS 169

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BLAST of Lsi06G012730 vs. Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.0e-51
Identity = 104/164 (63.41%), Postives = 134/164 (81.71%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           M  L LQKRLA+S L CGK++VWLDPNET  I+ ANSR +IRKL+KDGLIIK+ +T HS+
Sbjct: 1   MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           +R R+   A+ +GRH G GKR+GT  AR+P KL WMRRMR+LRRLLR+YRE +KID+H+Y
Sbjct: 61  ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRA 165
           H +Y+R KGNV+KNKR+LME IHK+KA++A +K LS Q EA+R+
Sbjct: 121 HSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRS 164

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BLAST of Lsi06G012730 vs. TrEMBL
Match: A0A0A0LSW8_CUCSA (Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.5e-77
Identity = 161/173 (93.06%), Postives = 168/173 (97.11%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Lsi06G012730 vs. TrEMBL
Match: W1NT99_AMBTC (Ribosomal protein L19 OS=Amborella trichopoda GN=AMTR_s00091p00066640 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.1e-59
Identity = 127/172 (73.84%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNET+ IS+ANSR +IRKL+KDG +IK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNETSEISMANSRQNIRKLVKDGFVIKKPQKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+  EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. TrEMBL
Match: A0A068V9R7_COFCA (Ribosomal protein L19 OS=Coffea canephora GN=GSCOC_T00000698001 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.2e-58
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ +EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. TrEMBL
Match: A0A166D927_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005783 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLA+S L CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKGKVWLDPNESNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ +EAK +GRH+G GKRRGT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHAGYGKRRGTREARLPTKVLWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNVYKNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVYKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. TrEMBL
Match: A0A0B2R3J3_GLYSO (Ribosomal protein L19 OS=Glycine soja GN=glysoja_038842 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.1e-58
Identity = 126/173 (72.83%), Postives = 146/173 (84.39%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CG+ +VWLDPNE   IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ +EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKKKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  RL
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASEERL 173

[Close]

BLAST of Lsi06G012730 vs. TAIR10
Match: AT1G02780.1 (AT1G02780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 229.2 bits (583), Expect = 2.0e-60
Identity = 124/172 (72.09%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS + CGK +VWLDPNE++ IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ + AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KIDKH+Y
Sbjct: 61  SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY+RVKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. TAIR10
Match: AT4G02230.1 (AT4G02230.1 Ribosomal protein L19e family protein)

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-60
Identity = 124/172 (72.09%), Postives = 145/172 (84.30%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLA+S L CGKR+VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+RQ   AK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLL+KYRE +KID+H+Y
Sbjct: 61  SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. TAIR10
Match: AT3G16780.1 (AT3G16780.1 Ribosomal protein L19e family protein)

HSP 1 Score: 221.9 bits (564), Expect = 3.1e-58
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL +QKRLAAS + CGK +VWLDPNE+  IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R   EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRR L KYRE +KID+H+Y
Sbjct: 61  SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK+KAEKA EKTL+ Q EAKR  N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. TAIR10
Match: AT4G16030.1 (AT4G16030.1 Ribosomal protein L19e family protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-09
Identity = 47/118 (39.83%), Postives = 74/118 (62.71%), Query Frame = 1


Query: 54  LMTTHSKSRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECE 113
           +++ H  SRSR RR+     RH+G GK       R+  +L   RR+++L+RLL+K+   +
Sbjct: 1   MVSIHFHSRSRARRKC----RHTGYGKDTMEALRRIMKRLT--RRLKMLKRLLKKFCWNK 60

Query: 114 KIDKHIY-HQMYIRVKGNVYKNKRVLMESIHKVKAEKAL---EKTLSVQVEAKRAINS 168
           KIDK +Y H M+++VKG VYKNK VLMES+HK   E+     E  L+++ E ++  ++
Sbjct: 61  KIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRERKFSGSEMRLALEPEGEKTASA 112

[Close]

BLAST of Lsi06G012730 vs. NCBI nr
Match: gi|659107003|ref|XP_008453495.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo])

HSP 1 Score: 301.6 bits (771), Expect = 8.8e-79
Identity = 163/173 (94.22%), Postives = 168/173 (97.11%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKVK EKALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVKTEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Lsi06G012730 vs. NCBI nr
Match: gi|449439153|ref|XP_004137352.1| (PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 2.2e-77
Identity = 161/173 (93.06%), Postives = 168/173 (97.11%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSLTLQKRLAASSL+CGKRRVWLDP+ETTTISLANSRMSIRKLIKDGLIIKRL TTHSK
Sbjct: 1   MVSLTLQKRLAASSLNCGKRRVWLDPDETTTISLANSRMSIRKLIKDGLIIKRLTTTHSK 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SRSRQR +AKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYR+ EKID+HIY
Sbjct: 61  SRSRQRHQAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRDYEKIDRHIY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIRL 174
           HQMYIRVKGNVYKNKRVLMESIHKV AEKALEKTLS+QVEAKRAINSK+ IRL
Sbjct: 121 HQMYIRVKGNVYKNKRVLMESIHKVHAEKALEKTLSIQVEAKRAINSKAIIRL 173

[Close]

BLAST of Lsi06G012730 vs. NCBI nr
Match: gi|586674116|ref|XP_006838023.1| (PREDICTED: 60S ribosomal protein L19-3 [Amborella trichopoda])

HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58
Identity = 127/172 (73.84%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNET+ IS+ANSR +IRKL+KDG +IK+    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNETSEISMANSRQNIRKLVKDGFVIKKPQKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+  EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRALEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. NCBI nr
Match: gi|661879094|emb|CDP17219.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ +EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKTKAEKAREKTLSDQFEAKRAKNKASRER 172

[Close]

BLAST of Lsi06G012730 vs. NCBI nr
Match: gi|729355800|ref|XP_010544991.1| (PREDICTED: 60S ribosomal protein L19-1-like [Tarenaya hassleriana])

HSP 1 Score: 233.4 bits (594), Expect = 3.0e-58
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 1


Query: 1   MVSLTLQKRLAASSLDCGKRRVWLDPNETTTISLANSRMSIRKLIKDGLIIKRLMTTHSK 60
           MVSL LQKRLAAS L CGK +VWLDPNE + IS+ANSR +IRKL+KDG II++    HS+
Sbjct: 1   MVSLKLQKRLAASVLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIRKPTKIHSR 60

Query: 61  SRSRQRREAKSRGRHSGNGKRRGTKEARLPTKLLWMRRMRVLRRLLRKYRECEKIDKHIY 120
           SR+R+ +EAK +GRHSG GKR+GT+EARLPTK+LWMRRMRVLRRLLRKYRE +KIDKH+Y
Sbjct: 61  SRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMY 120

Query: 121 HQMYIRVKGNVYKNKRVLMESIHKVKAEKALEKTLSVQVEAKRAINSKSTIR 173
           H MY++VKGNV+KNKRVLMESIHK KAEKA EKTLS Q EAKRA N  S  R
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRER 172

The following BLAST results are available for this feature:

BLAST of Lsi06G012730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL191_ARATH	3.5e-59	72.09	60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1	[more]
RL193_ARATH	6.0e-59	72.09	60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3	[more]
RL192_ARATH	5.6e-57	69.19	60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	[more]
RL19_TETTS	3.5e-51	64.50	60S ribosomal protein L19 OS=Tetrahymena thermophila (strain SB210) GN=RPL19 PE=...	[more]
RL19_ICTPU	6.0e-51	63.41	60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	[more]

BLAST of Lsi06G012730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSW8_CUCSA	1.5e-77	93.06	Ribosomal protein L19 OS=Cucumis sativus GN=Csa_1G025150 PE=3 SV=1	[more]
W1NT99_AMBTC	7.1e-59	73.84	Ribosomal protein L19 OS=Amborella trichopoda GN=AMTR_s00091p00066640 PE=3 SV=1	[more]
A0A068V9R7_COFCA	1.2e-58	73.26	Ribosomal protein L19 OS=Coffea canephora GN=GSCOC_T00000698001 PE=3 SV=1	[more]
A0A166D927_DAUCA	2.1e-58	73.26	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_005783 PE=4 SV=1	[more]
A0A0B2R3J3_GLYSO	2.1e-58	72.83	Ribosomal protein L19 OS=Glycine soja GN=glysoja_038842 PE=3 SV=1	[more]

BLAST of Lsi06G012730 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02780.1	2.0e-60	72.09	Ribosomal protein L19e family protein	[more]
AT4G02230.1	3.4e-60	72.09	Ribosomal protein L19e family protein	[more]
AT3G16780.1	3.1e-58	69.19	Ribosomal protein L19e family protein	[more]
AT4G16030.1	1.6e-09	39.83	Ribosomal protein L19e family protein	[more]

BLAST of Lsi06G012730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107003\|ref\|XP_008453495.1\|	8.8e-79	94.22	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis melo]	[more]
gi\|449439153\|ref\|XP_004137352.1\|	2.2e-77	93.06	PREDICTED: 60S ribosomal protein L19-3-like [Cucumis sativus]	[more]
gi\|586674116\|ref\|XP_006838023.1\|	1.0e-58	73.84	PREDICTED: 60S ribosomal protein L19-3 [Amborella trichopoda]	[more]
gi\|661879094\|emb\|CDP17219.1\|	1.7e-58	73.26	unnamed protein product [Coffea canephora]	[more]
gi\|729355800\|ref\|XP_010544991.1\|	3.0e-58	73.26	PREDICTED: 60S ribosomal protein L19-1-like [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR023638	Ribosomal_L19/L19e_CS
IPR015974	Ribosomal protein L19/L19e, domain 3
IPR015972	Ribosomal_L19/L19e_dom1
IPR000196	Ribosomal_L19/L19e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi06G012730.1	Lsi06G012730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000196	Ribosomal protein L19/L19e domain	PFAM	PF01280	Ribosomal_L19e	coord: 4..145 score: 2.5
IPR000196	Ribosomal protein L19/L19e domain	SMART	SM01416	Ribosomal_L19e_2	coord: 3..146 score: 3.1
IPR000196	Ribosomal protein L19/L19e domain	unknown	SSF48140	Ribosomal protein L19 (L19e)	coord: 3..144 score: 7.32
IPR015972	Ribosomal protein L19/L19e, domain 1	GENE3D	G3DSA:1.10.1650.10		coord: 1..53 score: 1.2
IPR015974	Ribosomal protein L19/L19e, domain 3	GENE3D	G3DSA:1.10.1200.60		coord: 90..149 score: 3.3
IPR023638	Ribosomal protein L19/L19e conserved site	PROSITE	PS00526	RIBOSOMAL_L19E	coord: 7..26 scor
None	No IPR available	PANTHER	PTHR10722	60S RIBOSOMAL PROTEIN L19	coord: 1..164 score: 9.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi06G012730	Csa1G025150	Cucumber (Chinese Long) v2	culsiB071
Lsi06G012730	CSPI01G04420	Wild cucumber (PI 183967)	cpilsiB071
Lsi06G012730	Cucsa.111630	Cucumber (Gy14) v1	cgylsiB156
Lsi06G012730	CmaCh10G003330	Cucurbita maxima (Rimu)	cmalsiB075
Lsi06G012730	CmoCh10G003590	Cucurbita moschata (Rifu)	cmolsiB061
Lsi06G012730	Cla018917	Watermelon (97103) v1	lsiwmB414
Lsi06G012730	MELO3C017364	Melon (DHL92) v3.5.1	lsimeB397
Lsi06G012730	ClCG06G014250	Watermelon (Charleston Gray)	lsiwcgB372
Lsi06G012730	MELO3C017364.2	Melon (DHL92) v3.6.1	lsimedB419
Lsi06G012730	Cla97C06G123710	Watermelon (97103) v2	lsiwmbB374
Lsi06G012730	Bhi02G000109	Wax gourd	lsiwgoB519
Lsi06G012730	Cp4.1LG18g06670	Cucurbita pepo (Zucchini)	cpelsiB301
Lsi06G012730	Carg15182	Silver-seed gourd	carlsiB726
Lsi06G012730	CsaV3_1G004430	Cucumber (Chinese Long) v3	cuclsiB082

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi06G012730	Cucurbita pepo (Zucchini)	cpelsiB556
Lsi06G012730	Cucumber (Gy14) v2	cgyblsiB068
Lsi06G012730	Silver-seed gourd	carlsiB540
Lsi06G012730	Cucurbita maxima (Rimu)	cmalsiB143
Lsi06G012730	Cucurbita moschata (Rifu)	cmolsiB128