CmoCh16G004440 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh16G004440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription elongation factor, putative
LocationCmo_Chr16 : 2127292 .. 2130025 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCGAGAAGTAAGAGAACAAACAAAAGAATCAAGAACAGGTACAACCGTCTTTATCATGAACGGTTTATCGTACCTCTATTTATGAATGAACCAGCAAATTAGGTAATTGAGTCATAATAACTGGTTTGCATTGACGAGTTGACGCCAAATTTAATTACATAGACAGTTTATAGCCCGAGATCCCACATTGGTTGGATAGAATAACGGAACATTCATTATAATGGTGTGAAAACCTCTTCCTATTAAACACGTTTTAAAATCTCGAAGGGAAAGCTCAAAGATTGGGTTGTTACAAATGTTATCAGAACCAGACATTGGACGGTGTGCCAGCTAGAACGTGAGCCATATACTAAATCGACATTAAAATAGATATTATATATTTACCAAATTTAAAAGTAATTGTTATAAATTTATAAAGGGAAGGATTTTTAAAAATTTTAATAATAAAACACAATAATGGATAAATTCAGAAGTAAAGGACTAAAAAAAGATTTTAAACATTTAAATTTTATTTTGTGCGAAAGTACAAAATGGTCCTCCATTTTCCATGCAAGGGTAGAATTAGTTTGAGGTTTTTCTGTAGTTATAGAATTAAGTTGGGGTTATTTTCGTAATTAGATAATGAACGTTTAAATTTCAGATGTCTATAAATACCACCCCCTCCCTCAATGCCTTGTACCATTCTTCAATTCGGCCAGCGACTCGTTTGCGGAAGAGAACGCTAATTCCTCGCAATTCGATCAGCGATCTGGTATGGCTTCTTTATTCTCTCCTCTCTTAGGGTTTGTAGTTCTAGGGTTTTATTAAGCCTTCGTCTGGCAGATTATTGTGCCTTTTTCGTAATGCCTGCAATTTAGGGTTCTACTTGTTGTCGTATATTATGGTTTTCTTCCCGTTCTTTTGTAATGTCGACGTTTTTTTGCGTTTTTCGTTGCGGTTGGTTATTCTTATTGAATTTGGTTGGTGGCGTGGTGTTGCTCTTATTGAAGATGGGAGACATTGTTCGAGTAACTTGTAGCTATGCTATCTGTGGCGAAAATGGAAATTTTAGTTATTGTTTGCTTTTGGTTATTTTCATAGACGGTGAGTTTCTATGATTCTTTAGGGTAGTGAAACTTGCATCTCTCGTACGATTTTACTTAATTGCGGCAGTTCATGGATTGGGTATGAATTTTTTGGATCAAGAGGACGGATGGTGAATATGAGTTTTTCTGTAGGAGGATTGGTAGCTTATTGACTGTGCTTGATATCCTTTAAAGTTTGATTACAACGCTCATTTTGAAGACTGATTGATGGTGATATTGTTTATGGATGTGAACAGACTCACGCCACAAGAAATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATGTAAGTTCGCAATTTGCATTTGGTTCCTCTTGGGTTCTTGTAACACGTGAGGGAGCGATTTGTTTGAAGGATTTTTATATTTTGTGGCATATGAAAACGCTGGAATAGTGAATATGTATAATACCAATAACTTGTGTCCTGGATTAGTCTCTCAGTTTAGGTGCCTTATTTGTTTGGCATTGTAACGAGAGTGTTTGTATGGTTTTAGTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGGTATTCTCTTTGAATCTCTTATTCCACGAGCGTTCGTTCTGTTTTCATTATCTGTTGTGTGTGTTTTACTTTACGCTTCATATTATGTTGTGGCCTGTAATTCAAGCAATTTAGGATTTTTTAAAAGAATATGTTTAATGGGTATTTTTCTGTTCTACTGGAGCAATTTTTGTTTGATCCGAACCTTAAATAGTGCACGGGACTGTGGGATTATTCTAGGGAACCCCATTTTCTCTATCCTCGAAATAGATGAATGAATGGAAGATTTGTTATGCAGTTGTCCCACCTTCCATCATCAATAGGCTTTTATTCCTGTTGTAGAGAAGTCTATCACATGAAAATGTGTAACCAAGTGTAAGGCATCATGTATGATTTAGGTGGATTTACTCGTTTTCGTGTCGAAGTCTCGACTTCCAACTTGTTATACTTATGCACTAATATTTCATTTGGTTTGTTTTGCAGCCTTGACTGAGCCAATAGATATGTAAGTAAAAATTAAACGCAACTGGTATATGTCGATATTGATGTTCTACAGGGCTTGGGTTGACATGACATTGTTTTGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAGAGGGAATCATCGACAATGCTGCTTAGAGGGAATCATTGGGGAAGGTTGAAGTTTGCCATTTTTCTACGAGAACGAAGCTTGCTCGTTCGAACGTTCCTTTTACGAATCTTAATTAATAGGGTGACTTACCGGTAGGTATAACAACACTCTTACCCTCGTAGCAGTATAGACAAGCATGTATGTATAATAGTATCATATTTTTCCTAGTTTGTGTGAATTTTCATCTATGTGCAAATGAAGAGTGGGTTTGTGAACCATCCTTTATTATTACTAATAATTCAACCTTCTTGTAGATGAAATATTAACGGACGTTCGTTCCTTCATGCATAAGACTTTTAATATAGTTAATACTGGTTTCTCCCTTGATA

mRNA sequence

ATGAGTTCGAGAACGATCTGACTCACGCCACAAGAAATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAGAGGGAATCATCGACAATGCTGCTTAGAGGGAATCATTGGGGAAGGTTGAAGTTTGCCATTTTTCTACGAGAACGAAGCTTGCTCGTTCGAACGTTCCTTTTACGAATCTTAATTAATAGGGTGACTTACCGGTAGGTATAACAACACTCTTACCCTCGTAGCAGTATAGACAAGCATGTATGTATAATAGTATCATATTTTTCCTAGTTTGTGTGAATTTTCATCTATGTGCAAATGAAGAGTGGGTTTGTGAACCATCCTTTATTATTACTAATAATTCAACCTTCTTGTAGATGAAATATTAACGGACGTTCGTTCCTTCATGCATAAGACTTTTAATATAGTTAATACTGGTTTCTCCCTTGATA

Coding sequence (CDS)

ATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAG
Homology
[Close]
BLAST of CmoCh16G004440 vs. Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-43
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of CmoCh16G004440 vs. Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-36
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEED 87
          TALTE IDIYSEWIDECERVN  E+D
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]
BLAST of CmoCh16G004440 vs. Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.6e-21
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRK S + P ++ + KLDT F+C FCNH  SV C +D KN IG  SC IC +SF T +
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 61 TALTEPIDIYSEWIDECERVNN---PEEDDG 89
           +L++P+D+YS+W D  E VN+    + DDG
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNSGRGSDTDDG 91

[Close]
BLAST of CmoCh16G004440 vs. Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-20
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTT 60
          MG+RKS  KPPP+K+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 VTALTEPIDIYSEWIDECERVN 82
          +T L+EP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]
BLAST of CmoCh16G004440 vs. Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.8e-20
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTT 60
          MG+RKS  KPPP+K+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 VTALTEPIDIYSEWIDECERVN 82
          +T L+EP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]
BLAST of CmoCh16G004440 vs. TrEMBL
Match: A0A0E0I4H6_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of CmoCh16G004440 vs. TrEMBL
Match: A0A0D3GTW0_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of CmoCh16G004440 vs. TrEMBL
Match: A0A0E0AN24_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of CmoCh16G004440 vs. TrEMBL
Match: A0A0E0EET3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of CmoCh16G004440 vs. TrEMBL
Match: A2X2X2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06540 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.0e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of CmoCh16G004440 vs. TAIR10
Match: AT5G46030.1 (AT5G46030.1 unknown protein)

HSP 1 Score: 153.3 bits (386), Expect = 7.1e-38
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEED 87
          TALTE IDIYSEWIDECERVN  E+D
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]
BLAST of CmoCh16G004440 vs. NCBI nr
Match: gi|1012097418|ref|XP_015956405.1| (PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis])

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-42
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKSSAKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTV
Sbjct: 1  MGKRKSSAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TAL+EPIDIYSEWIDECERVNNP EDDGA
Sbjct: 61 TALSEPIDIYSEWIDECERVNNP-EDDGA 88

[Close]
BLAST of CmoCh16G004440 vs. NCBI nr
Match: gi|747071672|ref|XP_011082718.1| (PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum])

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFST V
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDD 88
          TALTEPIDIYSEWIDECERVNNPE+DD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEDDD 87

[Close]
BLAST of CmoCh16G004440 vs. NCBI nr
Match: gi|1002287339|ref|XP_015647978.1| (PREDICTED: transcription elongation factor 1 homolog [Oryza sativa Japonica Group])

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of CmoCh16G004440 vs. NCBI nr
Match: gi|1012097410|ref|XP_015956403.1| (PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranensis])

HSP 1 Score: 174.9 bits (442), Expect = 6.4e-41
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRK+ +KPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTV
Sbjct: 1  MGKRKAKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TAL+EPIDIYSEWIDECERVNNP EDDGA
Sbjct: 61 TALSEPIDIYSEWIDECERVNNP-EDDGA 88

[Close]
BLAST of CmoCh16G004440 vs. NCBI nr
Match: gi|1012097402|ref|XP_015956401.1| (PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranensis])

HSP 1 Score: 174.9 bits (442), Expect = 6.4e-41
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1 

Query: 1   MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
           MGKRK+ +KPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTV
Sbjct: 13  MGKRKAKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 72

Query: 61  TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           TAL+EPIDIYSEWIDECERVNNP EDDGA
Sbjct: 73  TALSEPIDIYSEWIDECERVNNP-EDDGA 100

The following BLAST results are available for this feature:
BLAST of CmoCh16G004440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ELOF1_ORYSJ1.8e-4391.01Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os0... [more]
ELOF1_ARATH1.3e-3681.40Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 P... [more]
ELF1_YEAST9.6e-2149.45Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450... [more]
ELOF1_BOVIN4.8e-2051.22Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1[more]
ELOF1_HUMAN4.8e-2051.22Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1[more]
BLAST of CmoCh16G004440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0I4H6_ORYNI2.0e-4191.01Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
A0A0D3GTW0_9ORYZ2.0e-4191.01Uncharacterized protein OS=Oryza barthii PE=4 SV=1[more]
A0A0E0AN24_9ORYZ2.0e-4191.01Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
A0A0E0EET3_9ORYZ2.0e-4191.01Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1[more]
A2X2X2_ORYSI2.0e-4191.01Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06540 PE=4... [more]
BLAST of CmoCh16G004440 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46030.17.1e-3881.40 unknown protein[more]
BLAST of CmoCh16G004440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1012097418|ref|XP_015956405.1|4.4e-4295.51PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis][more]
gi|747071672|ref|XP_011082718.1|1.3e-4194.25PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum][more]
gi|1002287339|ref|XP_015647978.1|2.9e-4191.01PREDICTED: transcription elongation factor 1 homolog [Oryza sativa Japonica Grou... [more]
gi|1012097410|ref|XP_015956403.1|6.4e-4192.13PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranen... [more]
gi|1012097402|ref|XP_015956401.1|6.4e-4192.13PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranen... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007808Elf1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0048096 chromatin-mediated maintenance of transcription
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
biological_process GO:0006414 translational elongation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0008023 transcription elongation factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0000993 RNA polymerase II core binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh16G004440.1CmoCh16G004440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 2..87
score: 1.4
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 2..78
score: 3.7
NoneNo IPR availableunknownSSF57783Zinc beta-ribboncoord: 1..81
score: 7.14

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh16G004440Cucsa.032410Cucumber (Gy14) v1cgycmoB0006
CmoCh16G004440CmaCh16G004120Cucurbita maxima (Rimu)cmacmoB322
CmoCh16G004440Cla004282Watermelon (97103) v1cmowmB311
CmoCh16G004440Csa3G236590Cucumber (Chinese Long) v2cmocuB307
CmoCh16G004440MELO3C019389Melon (DHL92) v3.5.1cmomeB290
CmoCh16G004440ClCG05G009180Watermelon (Charleston Gray)cmowcgB291
CmoCh16G004440CSPI03G19550Wild cucumber (PI 183967)cmocpiB315
CmoCh16G004440Lsi05G001270Bottle gourd (USVL1VR-Ls)cmolsiB304
CmoCh16G004440Cp4.1LG14g03660Cucurbita pepo (Zucchini)cmocpeB307
CmoCh16G004440Cp4.1LG01g01450Cucurbita pepo (Zucchini)cmocpeB311
CmoCh16G004440MELO3C019389.2Melon (DHL92) v3.6.1cmomedB332
CmoCh16G004440CsaV3_3G019610Cucumber (Chinese Long) v3cmocucB0370
CmoCh16G004440Cla97C05G091500Watermelon (97103) v2cmowmbB332
CmoCh16G004440Bhi01G001144Wax gourdcmowgoB0434
CmoCh16G004440CsGy3G019480Cucumber (Gy14) v2cgybcmoB301
CmoCh16G004440Carg11343Silver-seed gourdcarcmoB0898
CmoCh16G004440Carg13178Silver-seed gourdcarcmoB0055
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh16G004440CmoCh04G005940Cucurbita moschata (Rifu)cmocmoB286
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh16G004440Cucumber (Chinese Long) v3cmocucB0393
CmoCh16G004440Wax gourdcmowgoB0448
CmoCh16G004440Cucurbita maxima (Rimu)cmacmoB701
CmoCh16G004440Bottle gourd (USVL1VR-Ls)cmolsiB299
CmoCh16G004440Cucumber (Gy14) v2cgybcmoB470