Cla97C05G091500 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G091500
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transcription elongation factor 1 homolog
Location	Cla97Chr05 : 9443380 .. 9444427 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATGTAAGTTTGCATGTGGTTCCTTTTGGGTTTTGGGTTCTTGTAACACGTGAGGGTTGGAAGAGGGACATGTTATAAGGATTTTAGTATTTTCGTGGCATAGTGAAAAGGCTGGAACAGTGAATATGTATAATATTCAATTACTTGGCTAATGGACTAGTCTCTCTGTTTATTGCCTCATTTGTTTTGCATTTTGACAAGGGTGTTTCTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGGTATTCTCTTCGAATCTCTTATTTGCTATCTGTTGGGTGTGTCTTACTTTGTGCTTTATATTATGACGCGATAGAAGCAATTCATGAATTCTTTTTTTTAGGATTTTTCTTTTAGAATATCTTTTAATGGATATTTTTGTCCTTCTGGAGCAGTTTTGTTTGATCTGTACTATAAATGGTGCACAGGGCTATAGGATTATTTTAGTGAACCCGATTTTCTCTGTGCTCAAATAGATGGATGAGTGGAAGCTTTGTCATGGAGTTGTCCCACCTTCCATCATCACTATAATTTTGTTCCTGTTGTAGAGAAGTCTATCAGATGAAAATACGTCCAAGTGCGTGTAGATCATCATGTATAATTTAGGTTGATCAAATATATCTCCGTGTCTAATCTAGAGCTTACATTTTGTTTTCATTGTTCTGCCTGTGTGAGAAATTTAGTTGCACTAACATTTCAATTCTTTTATTTTGCAGCCTTGAGTGAGGCAATTGACATGTAAGTAAATTAAAAGCAACTGGGTTTTGTCAATATTGTTGCTTTATAGTGTGCTTCAATTGACGTAATATCGTCTTGCTTTCGATCAGATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG

mRNA sequence

ATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAGTGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG

Coding sequence (CDS)

ATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAGTGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

Homology

[Close]

BLAST of Cla97C05G091500 vs. NCBI nr
Match: XP_004146241.1 (PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >XP_011651301.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus] >KGN57642.1 hypothetical protein Csa_3G236590 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 5.9e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Cla97C05G091500 vs. NCBI nr
Match: XP_015899142.1 (transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 transcription elongation factor 1 homolog [Ziziphus jujuba])

HSP 1 Score: 179.5 bits (454), Expect = 5.0e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+EAIDIYSEWIDECERVNTLEDD A
Sbjct: 61 TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of Cla97C05G091500 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 177.9 bits (450), Expect = 1.5e-41
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Cla97C05G091500 vs. NCBI nr
Match: XP_023908456.1 (transcription elongation factor 1 homolog [Quercus suber] >XP_023908457.1 transcription elongation factor 1 homolog [Quercus suber] >POF15752.1 transcription elongation factor 1 like [Quercus suber])

HSP 1 Score: 176.8 bits (447), Expect = 3.2e-41
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK++ KPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT+
Sbjct: 1  MGKRKAKTKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSE IDIYSEWIDECERVNTLEDD A
Sbjct: 61 TALSEPIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of Cla97C05G091500 vs. NCBI nr
Match: XP_004505112.1 (PREDICTED: transcription elongation factor 1 homolog [Cicer arietinum])

HSP 1 Score: 176.4 bits (446), Expect = 4.2e-41
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK++ KPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKAKTKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSEAIDIYSEWIDECERVNT+EDD A
Sbjct: 61 TALSEAIDIYSEWIDECERVNTVEDDGA 88

[Close]

BLAST of Cla97C05G091500 vs. TrEMBL
Match: tr|A0A1S3C2B7|A0A1S3C2B7_CUCME (Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC103496063 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.9e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Cla97C05G091500 vs. TrEMBL
Match: tr|A0A0A0LAG5|A0A0A0LAG5_CUCSA (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.9e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Cla97C05G091500 vs. TrEMBL
Match: tr|W9R774|W9R774_9ROSA (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 9.6e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Cla97C05G091500 vs. TrEMBL
Match: tr|A0A2P4MDY3|A0A2P4MDY3_QUESU (Transcription elongation factor 1 homolog OS=Quercus suber OX=58331 GN=CFP56_17959 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.1e-41
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK++ KPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT+
Sbjct: 1  MGKRKAKTKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TALSE IDIYSEWIDECERVNTLEDD A
Sbjct: 61 TALSEPIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of Cla97C05G091500 vs. TrEMBL
Match: tr|A0A2P5C7Z2|A0A2P5C7Z2_9ROSA (Transcription elongation factor 1 homolog OS=Trema orientalis OX=63057 GN=TorRG33x02_294290 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.8e-41
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA+CRICQESFSTT+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAACRICQESFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDDAA 89
          TAL+E IDIYSEWIDECERVN LE+DAA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of Cla97C05G091500 vs. Swiss-Prot
Match: sp|Q8LHP0|ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.4e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNTLEDD 87
           AL+E IDIYSEWIDECERVN +EDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Cla97C05G091500 vs. Swiss-Prot
Match: sp|Q8LEF3|ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 5.1e-38
Identity = 73/84 (86.90%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLE 85
          TAL+EAIDIYSEWIDECERVNT E
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAE 84

[Close]

BLAST of Cla97C05G091500 vs. Swiss-Prot
Match: sp|P36053|ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.7e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 61 TALSEAIDIYSEWIDECERVNT 83
           +LS+ +D+YS+W D  E VN+
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of Cla97C05G091500 vs. Swiss-Prot
Match: sp|O13868|ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.3e-19
Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK++AK  PK+R   LDT F+C FCNH  SV C +D ++ +G   C+IC +S    I
Sbjct: 1  MGKRKAKAKVKPKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLI 60

Query: 61 TALSEAIDIYSEWIDECERV 81
          TALS  ID+YS+WID C+ V
Sbjct: 61 TALSAPIDVYSDWIDACDAV 80

[Close]

BLAST of Cla97C05G091500 vs. Swiss-Prot
Match: sp|Q9XVZ8|ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans OX=6239 GN=Y54G11A.11 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.9e-19
Identity = 43/82 (52.44%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 1  MGKRKSRAKPPPK-KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 60
          MGKRKS+ K P K K +  LDT F+CPFCNH    E ++D +  +G  SCR+C E F T 
Sbjct: 1  MGKRKSKRKAPTKAKAVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTN 60

Query: 61 ITALSEAIDIYSEWIDECERVN 82
          I  LSE ID+YS+W+D CE+ N
Sbjct: 61 INYLSEPIDVYSDWVDACEQAN 82

[Close]

BLAST of Cla97C05G091500 vs. TAIR10
Match: AT5G46030.1 (unknown protein)

HSP 1 Score: 157.9 bits (398), Expect = 2.8e-39
Identity = 73/84 (86.90%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNTLE 85
          TAL+EAIDIYSEWIDECERVNT E
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAE 84

The following BLAST results are available for this feature:

BLAST of Cla97C05G091500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146241.1	5.9e-43	98.86	PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus] >XP_00845...	[more]
XP_015899142.1	5.0e-42	96.59	transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 tran...	[more]
XP_010090451.1	1.5e-41	95.45	transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509...	[more]
XP_023908456.1	3.2e-41	93.18	transcription elongation factor 1 homolog [Quercus suber] >XP_023908457.1 transc...	[more]
XP_004505112.1	4.2e-41	93.18	PREDICTED: transcription elongation factor 1 homolog [Cicer arietinum]	[more]

BLAST of Cla97C05G091500 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2B7\|A0A1S3C2B7_CUCME	3.9e-43	98.86	Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC10349606...	[more]
tr\|A0A0A0LAG5\|A0A0A0LAG5_CUCSA	3.9e-43	98.86	Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23...	[more]
tr\|W9R774\|W9R774_9ROSA	9.6e-42	95.45	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]
tr\|A0A2P4MDY3\|A0A2P4MDY3_QUESU	2.1e-41	93.18	Transcription elongation factor 1 homolog OS=Quercus suber OX=58331 GN=CFP56_179...	[more]
tr\|A0A2P5C7Z2\|A0A2P5C7Z2_9ROSA	2.8e-41	93.18	Transcription elongation factor 1 homolog OS=Trema orientalis OX=63057 GN=TorRG3...	[more]

BLAST of Cla97C05G091500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LHP0\|ELOF1_ORYSJ	6.4e-41	89.53	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q8LEF3\|ELOF1_ARATH	5.1e-38	86.90	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
sp\|P36053\|ELF1_YEAST	3.7e-20	52.44	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
sp\|O13868\|ELOF1_SCHPO	5.3e-19	52.50	Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 9...	[more]
sp\|Q9XVZ8\|ELOF1_CAEEL	6.9e-19	52.44	Transcription elongation factor 1 homolog OS=Caenorhabditis elegans OX=6239 GN=Y...	[more]

BLAST of Cla97C05G091500 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	2.8e-39	86.90	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038567	T_Elf1_sf
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006414	translational elongation
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0048096	chromatin-mediated maintenance of transcription
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0008023	transcription elongation factor complex
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G091500.1	Cla97C05G091500.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..78 e-value: 2.8E-31 score: 107.3
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 1..88
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	G3DSA:2.20.25.190		coord: 23..83 e-value: 1.5E-27 score: 97.2
None	No IPR available	PANTHER	PTHR20934:SF2	SUBFAMILY NOT NAMED	coord: 1..88
None	No IPR available	SUPERFAMILY	SSF57783	Zinc beta-ribbon	coord: 1..81

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G091500	Cla004282	Watermelon (97103) v1	wmwmbB206
Cla97C05G091500	Csa3G236590	Cucumber (Chinese Long) v2	cuwmbB215
Cla97C05G091500	MELO3C019389	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G091500	ClCG05G009180	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G091500	CSPI03G19550	Wild cucumber (PI 183967)	cpiwmbB221
Cla97C05G091500	Cucsa.032410	Cucumber (Gy14) v1	cgywmbB003
Cla97C05G091500	CmaCh04G005580	Cucurbita maxima (Rimu)	cmawmbB763
Cla97C05G091500	CmaCh16G004120	Cucurbita maxima (Rimu)	cmawmbB347
Cla97C05G091500	CmoCh16G004440	Cucurbita moschata (Rifu)	cmowmbB332
Cla97C05G091500	CmoCh04G005940	Cucurbita moschata (Rifu)	cmowmbB735
Cla97C05G091500	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	lsiwmbB329
Cla97C05G091500	CsGy3G019480	Cucumber (Gy14) v2	cgybwmbB206
Cla97C05G091500	MELO3C019389.2	Melon (DHL92) v3.6.1	medwmbB424
Cla97C05G091500	Carg13178	Silver-seed gourd	carwmbB0042
Cla97C05G091500	Carg11343	Silver-seed gourd	carwmbB0681
Cla97C05G091500	CsaV3_3G019610	Cucumber (Chinese Long) v3	cucwmbB217
Cla97C05G091500	Bhi01G001144	Wax gourd	wgowmbB179

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None