Carg13178 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13178
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription elongation factor 1 homolog
Location	Cucurbita_argyrosperma_scaffold_101 : 797191 .. 799406 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGCCTCACGCCATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGATTGTCGCATGTATGTTTGCATTTGGTTCATTTTTAGTATCTCGAGGCACAATGAAAAAGCTGGTTATGATATGTATTATCATTAGCTTGTCTCATGGATTAGTCTCTCTGTTTATGTGCCTCATTTGTTTTGTATTGTGATGAGGGTGTTTGTGTGGTTTTAGTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGGTATTCTCTTCAAGCCTCTAATTCTACGAGTGTTCTTGCCTTTTCCCATCTGTTTTGTATGTTTCAATTTATGCTTTATATTATGATGCGATTGAAGCATTTTAGGATTCTTTATGTTTGAATAGTTTGAGTTTGGTCTGAACTCTACCTAGGCTCATGGGAGTATTCTAATGAACCCCATTTTATCTGTCACAAAATAGATGGATTATGGAAGATTTCTTTTGCAGTTGTCCCTTCCATTCACGACTATATTTTCGTTCCTGTTGTAGGGAAGTTTATAAATGCTAGGGGTTGGATTAGTATTTCTGATTGGGTTGAGTTGGATTAGTATGTCTGGTTGGGTTGGATTAGTATGTCTGGTTGGGTTGGATTAGGTTGGGTTGGATTAGTATTTCTGGTTGGGTTGGGTTGGATTAGTATTTCTGGTTGGGTTGGGTTGGATTAGTATTTCTGGTTGGGTTGGGTTGGGTTATTTTTCCTGAACCCGAATCGGTTTTGGTTTCGGGTTCATAGGACAAAAATCTTGGGTTGACCTGAACCAAACAAAACTTAAAATAATACATACGCTAAGAAATCAAGCATATTTGCGGGTTTGGCAGAGCGGTAATTCTGGCGTGCTAGAATTACTCTATGCGCGCAGGTTGGTCAAATTTATTTTTTTATTACTTTACTATTTTTAATTTATTTTATTTTTTTATTACTTTACTGTTTTAATTTATTTTTTTATTACTTTACTATTTTTAATATTTTTTATCTAAGATTATTTGAATAATTATGAAGTGTGGATAAATAAATAAAATTTAATTTTTTTTAAAAAAAAGTTAACAAACCAACCACCCAACCAGAGAATACAAATTGGGTTGTGAAATTTTTTTAGTTGGGTTGGGTTATCAATCCAACCAACCCGAACTTTTGGGTTGGGTCAAAAAAAGCCCTCAACCCAACTGGACCATTTACACCCCTAATAAATGCAATGCAGATTCTATGAATAATTATGAATTGTGGATAAATAAATAAAATTTAATTTTTTTTTTAAAGTTAACCGAAAACCCAACCAGAAAATAGAAGTTGGGTTGTGAAATATTTTTGGTTGGGTAGGGTTATCAATCCAACCAACCGAACTTTTGGGTTGGGTCAAAAAAAGCCCTCAACCCAACCGGGACCATTTACACCCCTAATAAATGCAATGCCTCTAAGCCTAGGTCATTATCTATGATTTAGTTTAACCCATGTCTAATACGGGGCTTACAGATTGTTGTCATTAGTCTGTGTTGGGATAATTAAGCTGCACTAATATTTCTTCTCTTTTATTTTGCAGCCTTAAGCGAGCCAATAGACATGTAAGTAAAACTTAAATGCAGTTGGTTTTTGTCAATATTAATGTTCTATAGTTCTTCAGTTGACATGATGTTCTTTCGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGGTGCTTAGGGGGATTAATTGGGGCGTTTTCTGTATGAAAAGAAGCTGGCTAGTTTGAAGTTCCTTTGATGAATCTAAATTAAGAGGAGGGGATCTTATTGGTAGGTATGACAACACTCCTACTCTCGTAGCGTGTATGTACAGTAGTATGTTGTGATAGACAAGTGTGTGTACAGTAATATGTTGTGATGTCTTGCATGTTGACTTAATCTTGAATTTTAAGCACCTGTAACTTCCTTTCCTTATTTTGAGTCACGAGTCTTGTGGACACAAATAGTAAATGTCACTGCGAATTTTCGTGGGATCCTGAAACCTCATTTTGTTAATGAAATATTGAAGGGTGTTGTTCTACTTTGTTTTGCTTTGTGTCAATGGTTGTGCTTT

mRNA sequence

CAGCCTCACGCCATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGATTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGTTGACATGATGTTCTTTCGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGGTGCTTAGGGGGATTAATTGGGGCGTTTTCTGTATGAAAAGAAGCTGGCTAGTTTGAAGTTCCTTTGATGAATCTAAATTAAGAGGAGGGGATCTTATTGGTAGGTATGACAACACTCCTACTCTCGTAGCGTGTATGTACAGTAGTATGTTGTGATAGACAAGTGTGTGTACAGTAATATGTTGTGATGTCTTGCATGTTGACTTAATCTTGAATTTTAAGCACCTGTAACTTCCTTTCCTTATTTTGAGTCACGAGTCTTGTGGACACAAATAGTAAATGTCACTGCGAATTTTCGTGGGATCCTGAAACCTCATTTTGTTAATGAAATATTGAAGGGTGTTGTTCTACTTTGTTTTGCTTTGTGTCAATGGTTGTGCTTT

Coding sequence (CDS)

ATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGATTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGTTGACATGATGTTCTTTCGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGGTGCTTAGGGGGATTAATTGGGGCGTTTTCTGTATGAAAAGAAGCTGGCTAGTTTGA

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINWGVFCMKRSWLV

Homology

[Close]

BLAST of Carg13178 vs. NCBI nr
Match: XP_018850113.1 (PREDICTED: transcription elongation factor 1 homolog isoform X1 [Juglans regia] >XP_018850121.1 PREDICTED: transcription elongation factor 1 homolog isoform X1 [Juglans regia])

HSP 1 Score: 124.0 bits (310), Expect = 3.0e-25
Identity = 64/94 (68.09%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSV+CRIDMKNLIGEA             
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQENFSTTV 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTMVLRGINW 95
                  +DI NGS NVSGSTTLK MVLR +++
Sbjct: 61 --------TDIVNGSTNVSGSTTLKMMVLRKLSF 86

[Close]

BLAST of Carg13178 vs. NCBI nr
Match: XP_012457852.1 (PREDICTED: transcription elongation factor 1 homolog isoform X1 [Gossypium raimondii])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 59/90 (65.56%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT V+CR+DMKNLIGEA             
Sbjct: 23  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRLDMKNLIGEAICRICQESFCTTI 82

Query: 61  XXXXXFFRSDIANGSMNVSGSTTLKTMVLR 91
                   +D  NGSMNV  STTLKT +LR
Sbjct: 83  --------TDTVNGSMNVKRSTTLKTTMLR 104

[Close]

BLAST of Carg13178 vs. NCBI nr
Match: EOY28130.1 (Transcription elongation factor 1 isoform 2, partial [Theobroma cacao])

HSP 1 Score: 113.6 bits (283), Expect = 4.0e-22
Identity = 59/87 (67.82%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKSRAKP PKKRMDKLDTVFSCPFCNHGTSV+CR+DMKNLIGEA             
Sbjct: 1  MGKRKSRAKPAPKKRMDKLDTVFSCPFCNHGTSVECRLDMKNLIGEASCRICQESFSTVI 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTM 88
                  +DIANG MNVSG TTLK M
Sbjct: 61 --------TDIANGLMNVSGLTTLKMM 79

[Close]

BLAST of Carg13178 vs. NCBI nr
Match: XP_022715816.1 (transcription elongation factor 1 homolog isoform X1 [Durio zibethinus] >XP_022715817.1 transcription elongation factor 1 homolog isoform X1 [Durio zibethinus])

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 58/90 (64.44%), Postives = 63/90 (70.00%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKSRAKP PKKRMDKLDTVFSCPFCNHGTSV+CR+DMKNLIGEA             
Sbjct: 1  MGKRKSRAKPAPKKRMDKLDTVFSCPFCNHGTSVECRLDMKNLIGEASCRICQESFSTVI 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTMVLR 91
                  +D A+GS NVSG TTLK M +R
Sbjct: 61 --------TDTASGSTNVSGLTTLKMMEIR 82

[Close]

BLAST of Carg13178 vs. NCBI nr
Match: PKU72644.1 (Transcription elongation factor 1 like [Dendrobium catenatum])

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 57/89 (64.04%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKSRAKPPPKKRMDKLDTVF CPFCNHG+SV+CRID+KNLIGEA             
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGSSVECRIDIKNLIGEASCRICQENFSMTI 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTMVL 90
                  +DIANGSMN +GST  + MVL
Sbjct: 61 --------TDIANGSMNANGSTMSRMMVL 81

[Close]

BLAST of Carg13178 vs. TAIR10
Match: AT5G46030.1 (unknown protein)

HSP 1 Score: 88.6 bits (218), Expect = 2.5e-18
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEA 48
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SV+C IDMK+LIG+A
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKA 47

[Close]

BLAST of Carg13178 vs. Swiss-Prot
Match: sp|Q8LHP0|ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-20
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEA 48
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SV+CRIDMKNLIGEA
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEA 47

[Close]

BLAST of Carg13178 vs. Swiss-Prot
Match: sp|Q8LEF3|ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.5e-17
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEA 48
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SV+C IDMK+LIG+A
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKA 47

[Close]

BLAST of Carg13178 vs. Swiss-Prot
Match: sp|P36053|ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-07
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIG 46
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIG 45

[Close]

BLAST of Carg13178 vs. Swiss-Prot
Match: sp|O13868|ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 24/45 (53.33%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIG 46
          MGKRK++AK  PK+R   LDT F+C FCNH  SV C +D ++ +G
Sbjct: 1  MGKRKAKAKVKPKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVG 45

[Close]

BLAST of Carg13178 vs. Swiss-Prot
Match: sp|Q8MQI6|ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG40228 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.0e-06
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 1  MGKRKSRAKPPPK-KRMDKLDTVFSCPFCNHGTSVDCRID 40
          MG+RKS+ KPPPK K ++ LD  F+CPFCNH  S + ++D
Sbjct: 1  MGRRKSKRKPPPKRKNIEPLDQQFNCPFCNHEKSCEVKMD 40

[Close]

BLAST of Carg13178 vs. TrEMBL
Match: tr|A0A2I4H1T1|A0A2I4H1T1_9ROSI (Transcription elongation factor 1 homolog OS=Juglans regia OX=51240 GN=LOC109012765 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.0e-25
Identity = 64/94 (68.09%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSV+CRIDMKNLIGEA             
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQENFSTTV 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTMVLRGINW 95
                  +DI NGS NVSGSTTLK MVLR +++
Sbjct: 61 --------TDIVNGSTNVSGSTTLKMMVLRKLSF 86

[Close]

BLAST of Carg13178 vs. TrEMBL
Match: tr|A0A061GE28|A0A061GE28_THECC (Transcription elongation factor 1 homolog (Fragment) OS=Theobroma cacao OX=3641 GN=TCM_029784 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.7e-22
Identity = 59/87 (67.82%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKSRAKP PKKRMDKLDTVFSCPFCNHGTSV+CR+DMKNLIGEA             
Sbjct: 1  MGKRKSRAKPAPKKRMDKLDTVFSCPFCNHGTSVECRLDMKNLIGEASCRICQESFSTVI 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTM 88
                  +DIANG MNVSG TTLK M
Sbjct: 61 --------TDIANGLMNVSGLTTLKMM 79

[Close]

BLAST of Carg13178 vs. TrEMBL
Match: tr|A0A2I0WAG5|A0A2I0WAG5_9ASPA (Transcription elongation factor 1 homolog OS=Dendrobium catenatum OX=906689 GN=MA16_Dca010214 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 57/89 (64.04%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKSRAKPPPKKRMDKLDTVF CPFCNHG+SV+CRID+KNLIGEA             
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGSSVECRIDIKNLIGEASCRICQENFSMTI 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTMVL 90
                  +DIANGSMN +GST  + MVL
Sbjct: 61 --------TDIANGSMNANGSTMSRMMVL 81

[Close]

BLAST of Carg13178 vs. TrEMBL
Match: tr|A0A2K1YHZ7|A0A2K1YHZ7_POPTR (Transcription elongation factor 1 homolog OS=Populus trichocarpa OX=3694 GN=POPTR_011G097300v3 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.7e-21
Identity = 58/89 (65.17%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHGTSV+CRIDMKNLIGEA             
Sbjct: 1  MGKRKSTAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCGICQESFSMTI 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTMVL 90
                  +DIANG MN  GST  K  VL
Sbjct: 61 --------TDIANGLMNAKGSTAWKMTVL 81

[Close]

BLAST of Carg13178 vs. TrEMBL
Match: tr|K3Y084|K3Y084_SETIT (Transcription elongation factor 1 homolog OS=Setaria italica OX=4555 GN=LOC101776201 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.5e-20
Identity = 56/90 (62.22%), Postives = 62/90 (68.89%), Query Frame = 0


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEAXXXXXXXXXXXXX 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SV+CRIDMKNLIGEA             
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 XXXXXFFRSDIANGSMNVSGSTTLKTMVLR 91
                  +DI NG M+VS ST  K M++R
Sbjct: 61 --------NDIVNGLMSVSVSTLWKVMMMR 82

The following BLAST results are available for this feature:

BLAST of Carg13178 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_018850113.1	3.0e-25	68.09	PREDICTED: transcription elongation factor 1 homolog isoform X1 [Juglans regia] ...	[more]
XP_012457852.1	1.1e-22	65.56	PREDICTED: transcription elongation factor 1 homolog isoform X1 [Gossypium raimo...	[more]
EOY28130.1	4.0e-22	67.82	Transcription elongation factor 1 isoform 2, partial [Theobroma cacao]	[more]
XP_022715816.1	1.5e-21	64.44	transcription elongation factor 1 homolog isoform X1 [Durio zibethinus] >XP_0227...	[more]
PKU72644.1	1.5e-21	64.04	Transcription elongation factor 1 like [Dendrobium catenatum]	[more]

BLAST of Carg13178 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	2.5e-18	82.98	unknown protein	[more]

BLAST of Carg13178 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LHP0\|ELOF1_ORYSJ	4.4e-20	93.62	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q8LEF3\|ELOF1_ARATH	4.5e-17	82.98	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
sp\|P36053\|ELF1_YEAST	1.5e-07	55.56	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
sp\|O13868\|ELOF1_SCHPO	2.5e-07	53.33	Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 9...	[more]
sp\|Q8MQI6\|ELOF1_DROME	8.0e-06	55.00	Transcription elongation factor 1 homolog OS=Drosophila melanogaster OX=7227 GN=...	[more]

BLAST of Carg13178 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2I4H1T1\|A0A2I4H1T1_9ROSI	2.0e-25	68.09	Transcription elongation factor 1 homolog OS=Juglans regia OX=51240 GN=LOC109012...	[more]
tr\|A0A061GE28\|A0A061GE28_THECC	2.7e-22	67.82	Transcription elongation factor 1 homolog (Fragment) OS=Theobroma cacao OX=3641 ...	[more]
tr\|A0A2I0WAG5\|A0A2I0WAG5_9ASPA	1.0e-21	64.04	Transcription elongation factor 1 homolog OS=Dendrobium catenatum OX=906689 GN=M...	[more]
tr\|A0A2K1YHZ7\|A0A2K1YHZ7_POPTR	1.7e-21	65.17	Transcription elongation factor 1 homolog OS=Populus trichocarpa OX=3694 GN=POPT...	[more]
tr\|K3Y084\|K3Y084_SETIT	1.5e-20	62.22	Transcription elongation factor 1 homolog OS=Setaria italica OX=4555 GN=LOC10177...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1
IPR038567	T_Elf1_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13178-RA	Carg13178-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	G3DSA:2.20.25.190		coord: 23..64 e-value: 4.7E-12 score: 47.6
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..61 e-value: 2.2E-19 score: 69.2
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 1..62
None	No IPR available	PANTHER	PTHR20934:SF2	SUBFAMILY NOT NAMED	coord: 1..62
None	No IPR available	SUPERFAMILY	SSF57783	Zinc beta-ribbon	coord: 1..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13178	Cla004282	Watermelon (97103) v1	carwmB0048
Carg13178	Csa3G236590	Cucumber (Chinese Long) v2	carcuB0043
Carg13178	MELO3C019389	Melon (DHL92) v3.5.1	carmeB0041
Carg13178	ClCG05G009180	Watermelon (Charleston Gray)	carwcgB0045
Carg13178	CSPI03G19550	Wild cucumber (PI 183967)	carcpiB0047
Carg13178	Cucsa.032410	Cucumber (Gy14) v1	carcgyB0048
Carg13178	CmaCh04G005580	Cucurbita maxima (Rimu)	carcmaB0055
Carg13178	CmaCh16G004120	Cucurbita maxima (Rimu)	carcmaB0053
Carg13178	CmoCh04G005940	Cucurbita moschata (Rifu)	carcmoB0058
Carg13178	CmoCh16G004440	Cucurbita moschata (Rifu)	carcmoB0055
Carg13178	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	carlsiB039
Carg13178	Cp4.1LG14g03660	Cucurbita pepo (Zucchini)	carcpeB0059
Carg13178	Cp4.1LG01g01450	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13178	CsGy3G019480	Cucumber (Gy14) v2	carcgybB0043
Carg13178	MELO3C019389.2	Melon (DHL92) v3.6.1	carmedB0042
Carg13178	CsaV3_3G019610	Cucumber (Chinese Long) v3	carcucB0048
Carg13178	Cla97C05G091500	Watermelon (97103) v2	carwmbB0042
Carg13178	Bhi01G001144	Wax gourd	carwgoB0050

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13178	Carg11343	Silver-seed gourd	carcarB051

The following block(s) are covering this gene:

None