Cp4.1LG01g01450 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g01450
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription elongation factor 1 homolog
Location	Cp4.1LG01 : 2894966 .. 2898029 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTATTCTTCAATTTGACCCGCGAGACGACTACAACACCGAAAGATAATCCATCCCAATTCGATCAACAATCAGGTACGACGACTTTGGTCTCTCTTCTCTTAGGGTTCATAGTTCTAGGGTTTTCACTATGCTTTCAATTTGCTGATTATGTTCTCTGTTCTTACTTCCTGCCACCTAGGGTTCTATTCTATCTGTGACAAGAATGGGATTTTCCTGAGCTTTTAGTTATTGTTTGCTTTTGATTCTTTCCGTAGTCGATGAACTTATTTTTTTGAGTAATGGAACTTGCATCTTTTATACTGGTTTTATTTTGGTCGTTCATGAGTTGAACACGAATGTTTTGGGATTATAAGGATGGACGGTGAACTTGAGTTCTGATGTACGAGAATTAGTGGCTTATTGAATGATTGATATGTTCGAAGATTTAGTGTTTATAACCTTTTAAGTTTCATTGTATCCTCGTTTTGAAGACTGATTAGTAGTGATGTTGTTTATGGATGTGGACAGCCTCAATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCGCATGTATGTTTGCATTTGGTTCATTTTTAGTATCTAGAGGCACAATGAAAAAGCTGGTTATGATATGTTTTATCATTAGCTTGTCTCATGGATTAGTCTCTCTGTTTATGTGCCTCATTTGTTTTGTATTGTGATGAGGGTGTTTGTGTGGTTTTAGTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGGTATTCTCTTCAAGCCTCTAATTCTACGAGTGTTCTTGCCTTTCCCATCTGTTTTGTTTGTTTCAATTTATGCTTTATATTATGATGCGAATGAACATTTTAGGATTCTTTATGTTTTACTTGAGTAGTTTGAGTTTGGTCTGAACTCGGCCCATGGGAGTATTCTAGCGAACCCCATTTTATATCTGTCACAAAATAGATGGATTATGGAAGATTTCTTTTGCAGTTGTCCCTTCCATTCACGACTATATTTTCGTTCCTGTTGTAGGGAAGTTTATAAATGCTAGGGGTGTTCATCCAACCCGGCAACCCAATAACCCAGACCAACCCAACCCGAATGATAAGGGTTGGGTTATTTTTCCTGAACCTGAATCGGTTTCGGTTTCGGGTTCATAGGACAAAAATCTTGGGTGGACCCGAACCAAACAAAACTTATATAATACATACACTAAGAAATCAAGCATATTCACGGGTTTGGTATTGTGGTAATTCTGGCGTGATTACTCTACGCCCGCAGGTTCGACTTTGGTCAAATTTATTTATTTTTTATATTTTTTATTACTCTATTTTTTTTTTAATAATTTTTATTTAATTTCTTTTATATATTTTAAATTTCTCTTCATTTACTTTATACTATTTTTAAATACATTATTTATATTTTTTGTTGTGGAAAGTTCCTTTAAATTAATGGTTTTTATTGTTTTTTAATTTCTCTCTTCATCTACTTTATACTATTTTTAAATACATTATTTTTATTTTTGTTGGGTAGAGTTTTTTTATATTTTTTTATTTAATTTCTTTTATATATTTTAAATTTCTCTTCATTGCTTTATACTATTTTTAAATACATCATTTTTATTTTTGTTGGGTAGGGTTTTCTTTATATTTTTTATTTGATTTCTTTTATATATTTTAAATTTTTCTTCATCTACTTTATACTATTTTTAAATACATTATTTTTATTTTTGTTGTGGGAAGTTTGTTTAAATTATTGATTTTGATTGTTTTTTAAATACATTATTTTTATTTTTGTTGTGGAAAGTTTGTTTAAATTAATGATTTTGATTTTTTTTTTAATTTTTCTCTTCATTTCCTTTATACTATTTTTAAATACATTATTTTTATTTTTGTTGCGTAGAGTTTATTTAAATTAATGATTTTTATTATTTTTTAATTTCATGTATCTTATATTTTCCTTATTTCTAGAGTAATCAATTCCAAAGAAGTGTTGGTATTTAGTTGTTGATGGATTTTTTTTTTTAATGATTATGGATTGATTTGTGTTGTTTGTGAATTTTTAATATCTTTTATCTAAGATTCTATCAAATTATCAATATCAATGGTAGATAAATAAATAAAATTTAATTTTTCTTTTAAAAAAAGGTTAACAGCAACCCAACCAATAATAGGAATTGGGTTGTAAAAATTTTTGGGTTGGGTTGGGTTATCCAACCAACCTGAACTTCTGGGTTGAGTCAAAAAAAGCCCTCAACCCAACCCGGACCATTTACCCCCTAATGAATGCAATGCATCTAAGTCTAGGTCATTATCTATGATTTAGTTTAACCCATGTCTAATACGGGGCTTACAGATTGTTGTCATTAGTCTGTCTTGGGATAATTAAGCTGCACTAATATTTCTTCTCTTTTATTTTGCAGCCTTAAGCGAGCCAATAGACATGTAAGTAAAAACTAAATGCCGTTGGTTTTTGTCAATATTAATGTTCTATAGTGCTTCGGTTGACATGATGTTCTTTTGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAATCCTGAAGACGATGGTGCGTAGGGGGGGATCAATTGGGGCGTTTCTGTATGAAAAGAAGCTGGCTAGTTCGAAGTTCCTTTGATGAATCTAAATTAAGAGGAGGGGGTCTTATTGGTAGGTATGACAACACTCCTACTCTCGTAGCGTGTATGTACAGTAGTATGTTGTAATAGACAAGCGTGTATGTACAGTAATATGTTGTGATGTCTTGCATGTGGACTTAAATCTTGAAATTTAAGCACCTGTAACTTTCTTTCCTTATTTTGAGTCACGAGTCTTGTGGACACAAAAAGTAAATGTTACTGCGAATTTTCTATGTCCAGATGGAAAGTGGATTCTGAAACCTCATTTTGTTAATGAAATGTTGAAGTGTGTTCTATTTTATTTTGCTTTGTGTCAAT

mRNA sequence

CCTTATTCTTCAATTTGACCCGCGAGACGACTACAACACCGAAAGATAATCCATCCCAATTCGATCAACAATCAGCCTCAATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGCCTTAAGCGAGCCAATAGACATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAATCCTGAAGACGATGGTGCGTAGGGGGGGATCAATTGGGGCGTTTCTGTATGAAAAGAAGCTGGCTAGTTCGAAGTTCCTTTGATGAATCTAAATTAAGAGGAGGGGGTCTTATTGGTAGGTATGACAACACTCCTACTCTCGTAGCGTGTATGTACAGTAGTATGTTGTAATAGACAAGCGTGTATGTACAGTAATATGTTGTGATGTCTTGCATGTGGACTTAAATCTTGAAATTTAAGCACCTGTAACTTTCTTTCCTTATTTTGAGTCACGAGTCTTGTGGACACAAAAAGTAAATGTTACTGCGAATTTTCTATGTCCAGATGGAAAGTGGATTCTGAAACCTCATTTTGTTAATGAAATGTTGAAGTGTGTTCTATTTTATTTTGCTTTGTGTCAAT

Coding sequence (CDS)

ATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGCCTTAAGCGAGCCAATAGACATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAATCCTGAAGACGATGGTGCGTAG

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSITALSEPIDIYSEWIDECERVNNPEDDGA

Homology

[Close]

BLAST of Cp4.1LG01g01450 vs. Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.7e-41
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
           AL+EPIDIYSEWIDECERVNN EDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Cp4.1LG01g01450 vs. Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-36
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FST+I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TAL+E IDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Cp4.1LG01g01450 vs. Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTS 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEPIDIYSEWIDECERVN 82
          IT LSEP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Cp4.1LG01g01450 vs. Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTS 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEPIDIYSEWIDECERVN 82
          IT LSEP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Cp4.1LG01g01450 vs. Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.3e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTS 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEPIDIYSEWIDECERVN 82
          IT LSEP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Cp4.1LG01g01450 vs. TrEMBL
Match: W9R774_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST+I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TAL+EPIDIYSEWIDECERVNN EDDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. TrEMBL
Match: B9S937_RICCO (Transcription elongation factor, putative OS=Ricinus communis GN=RCOM_1012190 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.6e-41
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA C ICQE FST+I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCAICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TAL+EPID+YSEWIDECERVNN +DDGA
Sbjct: 61 TALTEPIDVYSEWIDECERVNNVDDDGA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. TrEMBL
Match: A0A068UCP0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021303001 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-41
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA C ICQE FSTS+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTSV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TAL+EPIDIYSEWIDECERVNN ED+GA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDEGA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. TrEMBL
Match: A0A067GDH8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034538mg PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-41
Identity = 81/88 (92.05%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKR+DKLDTVFSCPFCNHGTSVECRIDMKNLIGEA C ICQE FST+I
Sbjct: 1  MGKRKSRAKPPPKKRVDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TAL+EPIDIYSEWIDECERVNN EDDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. TrEMBL
Match: I3S2E0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.4e-41
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRK++AKP PKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCGICQE FST+I
Sbjct: 1  MGKRKAKAKPAPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCGICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TALSE IDIYSEWIDECERVNNP+DDGA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNPDDDGA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. TAIR10
Match: AT5G46030.1 (AT5G46030.1 unknown protein)

HSP 1 Score: 153.3 bits (386), Expect = 7.0e-38
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FST+I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TAL+E IDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Cp4.1LG01g01450 vs. NCBI nr
Match: gi|1012097418|ref|XP_015956405.1| (PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis])

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSSAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TALSEPIDIYSEWIDECERVNNPEDDGA
Sbjct: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. NCBI nr
Match: gi|1012097410|ref|XP_015956403.1| (PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranensis])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRK+++KPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKAKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TALSEPIDIYSEWIDECERVNNPEDDGA
Sbjct: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. NCBI nr
Match: gi|1012097402|ref|XP_015956401.1| (PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranensis])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 81/88 (92.05%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
           MGKRK+++KPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 13  MGKRKAKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 72

Query: 61  TALSEPIDIYSEWIDECERVNNPEDDGA 89
           TALSEPIDIYSEWIDECERVNNPEDDGA
Sbjct: 73  TALSEPIDIYSEWIDECERVNNPEDDGA 100

[Close]

BLAST of Cp4.1LG01g01450 vs. NCBI nr
Match: gi|747071672|ref|XP_011082718.1| (PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum])

HSP 1 Score: 179.1 bits (453), Expect = 3.4e-42
Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TAL+EPIDIYSEWIDECERVNNPEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEDDDA 88

[Close]

BLAST of Cp4.1LG01g01450 vs. NCBI nr
Match: gi|703076897|ref|XP_010090451.1| (hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 178.3 bits (451), Expect = 5.7e-42
Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST+I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDGA 89
          TAL+EPIDIYSEWIDECERVNN EDDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g01450 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELOF1_ORYSJ	3.7e-41	89.53	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os0...	[more]
ELOF1_ARATH	1.2e-36	81.40	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 P...	[more]
ELOF1_BOVIN	7.3e-21	54.88	Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1	[more]
ELOF1_HUMAN	7.3e-21	54.88	Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1	[more]
ELOF1_MOUSE	7.3e-21	54.88	Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1	[more]

BLAST of Cp4.1LG01g01450 vs. TrEMBL


Match Name	E-value	Identity	Description
W9R774_9ROSA	4.0e-42	94.32	Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1	[more]
B9S937_RICCO	2.6e-41	90.91	Transcription elongation factor, putative OS=Ricinus communis GN=RCOM_1012190 PE...	[more]
A0A068UCP0_COFCA	3.4e-41	92.05	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00021303001 PE=4 SV=1	[more]
A0A067GDH8_CITSI	3.4e-41	92.05	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034538mg PE=4 SV=1	[more]
I3S2E0_LOTJA	3.4e-41	90.91	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Cp4.1LG01g01450 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	7.0e-38	81.40	unknown protein	[more]

BLAST of Cp4.1LG01g01450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012097418\|ref\|XP_015956405.1\|	1.2e-42	94.32	PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis]	[more]
gi\|1012097410\|ref\|XP_015956403.1\|	2.6e-42	92.05	PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranen...	[more]
gi\|1012097402\|ref\|XP_015956401.1\|	2.6e-42	92.05	PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranen...	[more]
gi\|747071672\|ref\|XP_011082718.1\|	3.4e-42	93.18	PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum]	[more]
gi\|703076897\|ref\|XP_010090451.1\|	5.7e-42	94.32	hypothetical protein L484_011426 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048096	chromatin-mediated maintenance of transcription
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0008023	transcription elongation factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g01450.1	Cp4.1LG01g01450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 2..87 score: 2.6
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..78 score: 1.8
None	No IPR available	unknown	SSF57783	Zinc beta-ribbon	coord: 1..81 score: 3.91

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g01450	Cucsa.032410	Cucumber (Gy14) v1	cgycpeB0007
Cp4.1LG01g01450	CmaCh16G004120	Cucurbita maxima (Rimu)	cmacpeB351
Cp4.1LG01g01450	CmoCh16G004440	Cucurbita moschata (Rifu)	cmocpeB311
Cp4.1LG01g01450	CmoCh04G005940	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g01450	Cla004282	Watermelon (97103) v1	cpewmB433
Cp4.1LG01g01450	Csa3G236590	Cucumber (Chinese Long) v2	cpecuB389
Cp4.1LG01g01450	MELO3C019389	Melon (DHL92) v3.5.1	cpemeB412
Cp4.1LG01g01450	ClCG05G009180	Watermelon (Charleston Gray)	cpewcgB394
Cp4.1LG01g01450	CSPI03G19550	Wild cucumber (PI 183967)	cpecpiB388
Cp4.1LG01g01450	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	cpelsiB369
Cp4.1LG01g01450	MELO3C019389.2	Melon (DHL92) v3.6.1	cpemedB481
Cp4.1LG01g01450	CsaV3_3G019610	Cucumber (Chinese Long) v3	cpecucB0484
Cp4.1LG01g01450	Bhi01G001144	Wax gourd	cpewgoB0517
Cp4.1LG01g01450	CsGy3G019480	Cucumber (Gy14) v2	cgybcpeB362
Cp4.1LG01g01450	Carg11343	Silver-seed gourd	carcpeB0927
Cp4.1LG01g01450	Carg13178	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG01g01450	Cp4.1LG14g03660	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g01450	Bottle gourd (USVL1VR-Ls)	cpelsiB380
Cp4.1LG01g01450	Watermelon (Charleston Gray)	cpewcgB406
Cp4.1LG01g01450	Watermelon (97103) v1	cpewmB410
Cp4.1LG01g01450	Cucurbita maxima (Rimu)	cmacpeB720