Cp4.1LG14g03660 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG14g03660
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transcription elongation factor 1 homolog
Location	Cp4.1LG14 : 2114076 .. 2116227 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTTTAAATCTCAGATGTCTATAAATACCACCCCCTCCCTCAATGCCTTGTACCATTCTTCAATTCGGCCAGCGACTCGTTTGCGGAAGAGAACGATAATTCCTCGCAATTCGATCAGCGATCTGGTATGGCTTCTTTATTCTCTCCTCTCTTAGGGTTTGTAGTTCTAGGGTTTTATTAAGCCTTCGTTTGGCAGATTATTGTGCTTTTTTCGTAATGCCTGCAATCTAGGGTTCTACTTGTTGTCGTATATTATGGTTTTCTTCCCGTTCTTTTGTAATGTCGACGTTTTTTTGCGTTTTTCGTTGCGTTTGGTTATTCTTATTGAATTTGGTTGGTGGCGTGGTGTTGCTCTTATTGAAGATGGGAGACATTGTTTGAGTAACTTGTAACTATGCTATCTGTTGCGAAAATGGAAATTTTAGTTATTGTTTGCTTTTGGTTCATAGACGGTGAGTTTCTATGATTCTTTAGGGTGGTGTAACTTGCATCTCTCGTACGATTTTACTTGATTGCGGCAGTTCAGGGATTGGGTATGAATTTTTCGGATCAAGAGGACGGGTGGTGAATATGAGTTTTTCTGTAGGAGGATTGGTAGCTTATTGACTGTGCTTGATATGCTTGAAAGATCTAGGCTTGATATCCTTTAAAGTTTGATTACAACGCTCATTTTGAAGACTGATTGATGGTGATATTGTCTATGGATGTGAACAGTCTCACGCCACAAAGAATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATGTAAGTTCGCAATTTGCATTTGGTTCCTCTTGGGTTATTGTAACACGTGAGGGAGCGATTTGTTTGAAGGACTTTTATATTTTGTGGCATATGAAAACGCCGGAATAGTGAATATGCATAGTACCAATAACTTGTGTCCTGGATTAGTCTCTCAGTCTAGGTGCCTTATTTGTTTGGCATTGTAACGAGGGTGTTTGTATGGTTTTAGTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGGTATTCTCTTCGAATCTTTTATTCCACGAGCGTTAGTTCTGTTTTCATTATCTGTTGTGTGTGTTTTACTTTACGCTTCATATCATGTTGTGGCCTGTAATTCAAGCAATTTAGGATTTTTTTAAAGAATATGTTTAATGGGTATTTTTCTGTTCTACTGGAGCAATTTTTGTTTGATCCGAACCTTAAATAGTGCACGGGACTGTGGGATTATTCTAGGGAACCCCATTTTCTCTATGCTCGAAATAGATGGATGAATGGAAGTTTTGTTATGCAGTTGTCCCACCTTCCATCATCATTAGACTTTTATTCCTGTTGTAGGGAAGTCTATCAGATGAAAATATGTACCAAGTGTAAGGCATCATGTATGATTTAGGTGGATTTAATCGTTTTCGTGTCGAAGTCTCGACTTCCAACTTGTTATACTTATGCACTAATATTTCATTTGGTTTGTTTGCAGCCTTGACTGAGCCAATAGATATGTAAGTAAAAACTAAAACGCAACTGGTATATGTCGATATTGATGTTCTACAGGGCTTTGGTTGACATGATGTTGTTTTGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAGAGGGAATCATCGACAATGCTGCTTAGAGGGAATCATTGGGGAAGGTTGAAGTTTGCCATTTTTCTACGAGAACGAAGCTTGCTCGTTCGAACGTTCCTTTTACGAATCTTAATTAATAGGGTGACTTACCGGTAGGTATAACAACACTCTTACCCTCGTAGCAGTATAGACAAGCATGTATGTATAATAGTATCATATTTTTCCTAGTTTGTGTGAATTTTCATCTATGTGCAAATGAAGAGTGGGTTTGTGAACCATCCTTTATTATTACTAATAATTCAACCTTCTTGTAGATGAAATATTAACGGACGTATGTTCCTTCCTGTTCGATTATATGGCGTTTTATCATTGCTAGTTAATGTTATCGATAATTATAAATAATTTAGAGCTCGTTT

mRNA sequence

ATGAACATGTCTATAAATACCACCCCCTCCCTCAATGCCTTGTACCATTCTTCAATTCGGCCAGCGACTCGTTTGCGGAAGAGAACGATAATTCCTCGCAATTCGATCAGCGATCTGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAGAGGGAATCATCGACAATGCTGCTTAGAGGGAATCATTGGGGAAGGTTGAAGTTTGCCATTTTTCTACGAGAACGAAGCTTGCTCGTTCGAACGTTCCTTTTACGAATCTTAATTAATAGGGTGACTTACCGGTAGGTATAACAACACTCTTACCCTCGTAGCAGTATAGACAAGCATGTATGTATAATAGTATCATATTTTTCCTAGTTTGTGTGAATTTTCATCTATGTGCAAATGAAGAGTGGGTTTGTGAACCATCCTTTATTATTACTAATAATTCAACCTTCTTGTAGATGAAATATTAACGGACGTATGTTCCTTCCTGTTCGATTATATGGCGTTTTATCATTGCTAGTTAATGTTATCGATAATTATAAATAATTTAGAGCTCGTTT

Coding sequence (CDS)

ATGAACATGTCTATAAATACCACCCCCTCCCTCAATGCCTTGTACCATTCTTCAATTCGGCCAGCGACTCGTTTGCGGAAGAGAACGATAATTCCTCGCAATTCGATCAGCGATCTGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAG

Protein sequence

MNMSINTTPSLNALYHSSIRPATRLRKRTIIPRNSISDLSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA

Homology

[Close]

BLAST of Cp4.1LG14g03660 vs. Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.5e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTE
Sbjct: 6   SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNN E+DDGA
Sbjct: 66  PIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Cp4.1LG14g03660 vs. Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.0e-33
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+TALTE
Sbjct: 6   SRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTE 65

Query: 100 PIDIYSEWIDECERVNNPEED 121
            IDIYSEWIDECERVN  E+D
Sbjct: 66  AIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Cp4.1LG14g03660 vs. Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.2e-18
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 41  SAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEP 100
           S + P ++ + KLDT F+C FCNH  SV C +D KN IG  SC IC +SF T + +L++P
Sbjct: 7   STRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQP 66

Query: 101 IDIYSEWIDECERVNN---PEEDDG 123
           +D+YS+W D  E VN+    + DDG
Sbjct: 67  VDVYSDWFDAVEEVNSGRGSDTDDG 91

[Close]

BLAST of Cp4.1LG14g03660 vs. Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-17
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 40  SSAKPPPRKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALT 99
           S  KPPP+K+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T +T L+
Sbjct: 6   SKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65

Query: 100 EPIDIYSEWIDECERVN 116
           EP+D+YS+WID CE  N
Sbjct: 66  EPVDVYSDWIDACEAAN 82

[Close]

BLAST of Cp4.1LG14g03660 vs. Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-17
Identity = 38/77 (49.35%), Postives = 51/77 (66.23%), Query Frame = 1


Query: 40  SSAKPPPRKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALT 99
           S  KPPP+K+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T +T L+
Sbjct: 6   SKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65

Query: 100 EPIDIYSEWIDECERVN 116
           EP+D+YS+WID CE  N
Sbjct: 66  EPVDVYSDWIDACEAAN 82

[Close]

BLAST of Cp4.1LG14g03660 vs. TrEMBL
Match: A0A0E0AN24_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTE
Sbjct: 6   SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNN E+DDGA
Sbjct: 66  PIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Cp4.1LG14g03660 vs. TrEMBL
Match: A2X2X2_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06540 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTE
Sbjct: 6   SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNN E+DDGA
Sbjct: 66  PIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Cp4.1LG14g03660 vs. TrEMBL
Match: I1QCH2_ORYGL (Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTE
Sbjct: 6   SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNN E+DDGA
Sbjct: 66  PIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Cp4.1LG14g03660 vs. TrEMBL
Match: A0A0E0EET3_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTE
Sbjct: 6   SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNN E+DDGA
Sbjct: 66  PIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Cp4.1LG14g03660 vs. TrEMBL
Match: A0A0E0I4H6_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-38
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTE
Sbjct: 6   SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNN E+DDGA
Sbjct: 66  PIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Cp4.1LG14g03660 vs. TAIR10
Match: AT5G46030.1 (AT5G46030.1 unknown protein)

HSP 1 Score: 144.1 bits (362), Expect = 5.9e-35
Identity = 65/81 (80.25%), Postives = 73/81 (90.12%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+TALTE
Sbjct: 6   SRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTE 65

Query: 100 PIDIYSEWIDECERVNNPEED 121
            IDIYSEWIDECERVN  E+D
Sbjct: 66  AIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Cp4.1LG14g03660 vs. NCBI nr
Match: gi|1012097418|ref|XP_015956405.1| (PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis])

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-39
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           SSAKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTVTAL+E
Sbjct: 6   SSAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTVTALSE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNNP EDDGA
Sbjct: 66  PIDIYSEWIDECERVNNP-EDDGA 88

[Close]

BLAST of Cp4.1LG14g03660 vs. NCBI nr
Match: gi|747071672|ref|XP_011082718.1| (PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum])

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFST VTALTE
Sbjct: 6   SRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNVTALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDD 122
           PIDIYSEWIDECERVNNPE+DD
Sbjct: 66  PIDIYSEWIDECERVNNPEDDD 87

[Close]

BLAST of Cp4.1LG14g03660 vs. NCBI nr
Match: gi|1002287339|ref|XP_015647978.1| (PREDICTED: transcription elongation factor 1 homolog [Oryza sativa Japonica Group])

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-38
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           S+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV ALTE
Sbjct: 6   SAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNN E+DDGA
Sbjct: 66  PIDIYSEWIDECERVNNVEDDDGA 89

[Close]

BLAST of Cp4.1LG14g03660 vs. NCBI nr
Match: gi|1012097410|ref|XP_015956403.1| (PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranensis])

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-38
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           + +KPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTVTAL+E
Sbjct: 6   AKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTVTALSE 65

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNNP EDDGA
Sbjct: 66  PIDIYSEWIDECERVNNP-EDDGA 88

[Close]

BLAST of Cp4.1LG14g03660 vs. NCBI nr
Match: gi|1012097402|ref|XP_015956401.1| (PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranensis])

HSP 1 Score: 165.6 bits (418), Expect = 5.4e-38
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 1


Query: 40  SSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTE 99
           + +KPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTVTAL+E
Sbjct: 18  AKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTVTALSE 77

Query: 100 PIDIYSEWIDECERVNNPEEDDGA 124
           PIDIYSEWIDECERVNNP EDDGA
Sbjct: 78  PIDIYSEWIDECERVNNP-EDDGA 100

The following BLAST results are available for this feature:

BLAST of Cp4.1LG14g03660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELOF1_ORYSJ	1.5e-40	90.48	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os0...	[more]
ELOF1_ARATH	1.0e-33	80.25	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 P...	[more]
ELF1_YEAST	6.2e-18	47.06	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
ELOF1_BOVIN	1.8e-17	49.35	Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1	[more]
ELOF1_HUMAN	1.8e-17	49.35	Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1	[more]

BLAST of Cp4.1LG14g03660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0E0AN24_9ORYZ	1.7e-38	90.48	Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1	[more]
A2X2X2_ORYSI	1.7e-38	90.48	Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06540 PE=4...	[more]
I1QCH2_ORYGL	1.7e-38	90.48	Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1	[more]
A0A0E0EET3_9ORYZ	1.7e-38	90.48	Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1	[more]
A0A0E0I4H6_ORYNI	1.7e-38	90.48	Uncharacterized protein OS=Oryza nivara PE=4 SV=1	[more]

BLAST of Cp4.1LG14g03660 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	5.9e-35	80.25	unknown protein	[more]

BLAST of Cp4.1LG14g03660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012097418\|ref\|XP_015956405.1\|	3.7e-39	95.24	PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis]	[more]
gi\|747071672\|ref\|XP_011082718.1\|	1.1e-38	93.90	PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum]	[more]
gi\|1002287339\|ref\|XP_015647978.1\|	2.4e-38	90.48	PREDICTED: transcription elongation factor 1 homolog [Oryza sativa Japonica Grou...	[more]
gi\|1012097410\|ref\|XP_015956403.1\|	5.4e-38	91.67	PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranen...	[more]
gi\|1012097402\|ref\|XP_015956401.1\|	5.4e-38	91.67	PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranen...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0048096	chromatin-mediated maintenance of transcription
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0008023	transcription elongation factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG14g03660.1	Cp4.1LG14g03660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 40..121 score: 3.4
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 41..112 score: 4.7
None	No IPR available	unknown	SSF57783	Zinc beta-ribbon	coord: 41..115 score: 3.74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG14g03660	Cucsa.032410	Cucumber (Gy14) v1	cgycpeB0005
Cp4.1LG14g03660	CmaCh16G004120	Cucurbita maxima (Rimu)	cmacpeB344
Cp4.1LG14g03660	CmoCh16G004440	Cucurbita moschata (Rifu)	cmocpeB307
Cp4.1LG14g03660	CmoCh04G005940	Cucurbita moschata (Rifu)	cmocpeB668
Cp4.1LG14g03660	Cla004282	Watermelon (97103) v1	cpewmB228
Cp4.1LG14g03660	Csa3G236590	Cucumber (Chinese Long) v2	cpecuB205
Cp4.1LG14g03660	MELO3C019389	Melon (DHL92) v3.5.1	cpemeB192
Cp4.1LG14g03660	ClCG05G009180	Watermelon (Charleston Gray)	cpewcgB208
Cp4.1LG14g03660	CSPI03G19550	Wild cucumber (PI 183967)	cpecpiB208
Cp4.1LG14g03660	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	cpelsiB177
Cp4.1LG14g03660	MELO3C019389.2	Melon (DHL92) v3.6.1	cpemedB234
Cp4.1LG14g03660	CsaV3_3G019610	Cucumber (Chinese Long) v3	cpecucB0247
Cp4.1LG14g03660	Bhi01G001144	Wax gourd	cpewgoB0295
Cp4.1LG14g03660	CsGy3G019480	Cucumber (Gy14) v2	cgybcpeB317
Cp4.1LG14g03660	Carg11343	Silver-seed gourd	carcpeB0926
Cp4.1LG14g03660	Carg13178	Silver-seed gourd	carcpeB0059

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG14g03660	Cp4.1LG01g01450	Cucurbita pepo (Zucchini)	cpecpeB234

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG14g03660	Cucumber (Chinese Long) v3	cpecucB0270
Cp4.1LG14g03660	Wax gourd	cpewgoB0309
Cp4.1LG14g03660	Cucurbita maxima (Rimu)	cmacpeB715
Cp4.1LG14g03660	Bottle gourd (USVL1VR-Ls)	cpelsiB188
Cp4.1LG14g03660	Cucumber (Gy14) v2	cgybcpeB490