Carg11343 (gene) Silver-seed gourd

Overview
NameCarg11343
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTranscription elongation factor 1 homolog
LocationCucurbita_argyrosperma_scaffold_025 : 390309 .. 392529 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTTTTCAATTCCGCCAGCGACTCGTCTGCGGAAGAGAACGTTAATTCCTCGCAATTCGATCAGCGATCTGGTATGACTTTTTGTTCTCTTCTCTCTTAGGGTTTGTAGTTCTAGGGTTTTATTAAGCCTTCGTTTGGCAGATTAGTGTGCCTTTTTCGTAATGCCTGCAATCTAGGGTTCTACTTGTTGTCGTATATTATGGTTTTCTTCCCGTTCTTTTGTAATGTCGACGTTTTTTTTGCGTTTTTCGTTGCGGTTGGTTATTCTTATTGAATTTGGTTGGTGGCGTGGTGTTGCTCTTATTGAAGATGGGAGACATTGTTTGAGTAACTTGTAGGTATGCTATCTGTGGCGAAAATGGAAATTTTAGTTATTGTTTGCTTTAGGTTATTTTCATAGACGGTGAGTTTCTATGATTCTTTAGGGAAGTGAAACTTGCATCTCTTGTACGATTTTACTTAATTGCGGCCGTCCATGGATTGGGGATGAATTTTTCGGATCAAGAGGTTGGGTGGTGAATATGAGTTTTTTCTGTAGGAGGATTGGTAGCTTATTGACTGTGCTTGATATGCTTGAAAGATCTAGGCCTGATATCCTTTAAAGTTTGATTACAACGCTCATTTTGAAGACTGATTGATGGTGATATTGTTTATGGTGTGAACAGACTCACGCCACAAGAAATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATGTAAGTTCGCAATTTGCATTTGGTTCCTCTTGGGTTCTTGCAACACGTGAGGGAGCGATTTGTTTGAAGGATTTTTATATTTTGTGGCATATGAAAACGCTGGAATAGTGAATATGTATAATACCAATAACTTGTGTCCTGGATTAGTCTCTCAGTCTAGGTGCCTTATTTGTTTGGCATTGTAACGAGGGTGTTTGTATGGTTTTAGTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGGTATTCTCTTTGAATCTCTTATTCCACGAGCGTTTGTTTTGTTTTCATTATCTGTTGTGTGTATTTTACTTTACGCTTCATATTATGTTGTGGCCTGTAATTCAAGCAATTTAGGATTTTTTTTAAAGAATATGTTTAATGGGTATTTTTCTATTCTACTGGAGCAATTTTTGTTTGATCCGAACCTTAAATAGTGCACGGGACTGTGGGATTATTCTAGGGAACCCCATTTTCTCTATGCCCGAAATAGATGGATGAATGGAAGATTTGTTATGCAGTTGTCCCACCTTCCATCATCAATAGACTTTTATTCCTGATCAGATGAAAATGTGTACCAAGTGTAAGGCATCATGCATGATTTAGGTGGATTTAATTGTTTTCGTGTCGAAGTCTCGGCTTACAACTTGATACTTATGCACTAATATTTCATTTGTTTTGTTTTGCAGCCTTGACTGAGCCAATAGATATGTAAGTAAAAATTAAACGCAACTGGTATATGTTGATATTGATGTTCTATAGGGCTTTGGTTGACATGATGTTGTTTTGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAGAGGGAATCATCGACAATGCTGCTTAGAGGGAATCATTGGGGAAGGTTGAAGTTTGCCATTTTTCTACGAGAATGAAGCTTGCTCGTTCGAACGTTCCTTTCACGAATCTTAATTAATAGGGTGACTTACCGGTAGGTATAACAACACTCTTACCCTCGTAGCAGTATAGACAAGCATGTATGTATAATAGTATCATATTTTTCCTAGTTTGTGTGAATTTTCATCTATGTGCAAATGAAGAGTGGGTTTGTGAACCATCCTTTATTATTACTAATAATTCAACCTTCTTGTAGATGAAATATTAACCGACGTTCGTTCCTTCCTGTTCGAGTATATGGCGTTTTATCATTGCTAGTTAATGTTATCGATATGGATTACCTTTTAAACGCTTTAAAATATTTTTATGTTCGTTTGTTGAGTCTTTCAAGTATCTTTGATTTGATTTGATTTACTCTCCTGAAAAGCAGCTAATTCATTTATTCTCCTTGTCCGTCCCTGAATCTTTTCTTTACTCTCCTGTAAAGGTTCCTGAG

mRNA sequence

ATTTTTCAATTCCGCCAGCGACTCGTCTGCGGAAGAGAACGTTAATTCCTCGCAATTCGATCAGCGATCTGACTCACGCCACAAGAAATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAGAGGGAATCATCGACAATGCTGCTTAGAGGGAATCATTGGGGAAGGTTGAAGTTTGCCATTTTTCTACGAGAATGAAGCTTGCTCGTTCGAACGTTCCTTTCACGAATCTTAATTAATAGGGTGACTTACCGGTAGGTATAACAACACTCTTACCCTCGTAGCAGTATAGACAAGCATGTATGTATAATAGTATCATATTTTTCCTAGTTTGTGTGAATTTTCATCTATGTGCAAATGAAGAGTGGGTTTGTGAACCATCCTTTATTATTACTAATAATTCAACCTTCTTGTAGATGAAATATTAACCGACGTTCGTTCCTTCCTGTTCGAGTATATGGCGTTTTATCATTGCTAGTTAATGTTATCGATATGGATTACCTTTTAAACGCTTTAAAATATTTTTATGTTCGTTTGTTGAGTCTTTCAAGTATCTTTGATTTGATTTGATTTACTCTCCTGAAAAGCAGCTAATTCATTTATTCTCCTTGTCCGTCCCTGAATCTTTTCTTTACTCTCCTGTAAAGGTTCCTGAG

Coding sequence (CDS)

ATGGGGAAACGAAAGTCAAGTGCAAAGCCCCCACCTAGGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGAACCAGTGTTGAATGTCGCATTGACATGAAGAACCTGATTGGGGAAGCCTCCTGTGGGATTTGCCAAGAAAGCTTTAGCACAACTGTTACAGCCTTGACTGAGCCAATAGATATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGAAGACGATGGTGCTTAG

Protein sequence

MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTVTALTEPIDIYSEWIDECERVNNPEEDDGA
Homology
[Close]
BLAST of Carg11343 vs. NCBI nr
Match: XP_022922476.1 (transcription elongation factor 1 homolog [Cucurbita moschata] >XP_022985169.1 transcription elongation factor 1 homolog [Cucurbita maxima] >XP_023551973.1 transcription elongation factor 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 190.7 bits (483), Expect = 2.2e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV
Sbjct: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TALTEPIDIYSEWIDECERVNNPEEDDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 89

[Close]
BLAST of Carg11343 vs. NCBI nr
Match: XP_020100434.1 (transcription elongation factor 1 homolog [Ananas comosus] >XP_020100436.1 transcription elongation factor 1 homolog [Ananas comosus] >XP_020100437.1 transcription elongation factor 1 homolog [Ananas comosus] >OAY67665.1 Transcription elongation factor [Ananas comosus] >OAY67675.1 Transcription elongation factor [Ananas comosus])

HSP 1 Score: 179.1 bits (453), Expect = 6.6e-42
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKPPPRKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA+C ICQESFSTTV
Sbjct: 1  MGKRKSRAKPPPRKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEATCRICQESFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TALTEPIDIYSEWIDECERVNN EEDDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDDGA 89

[Close]
BLAST of Carg11343 vs. NCBI nr
Match: XP_015956405.1 (transcription elongation factor 1 homolog isoform X9 [Arachis duranensis] >XP_016190029.1 transcription elongation factor 1 homolog [Arachis ipaensis] >XP_025690169.1 transcription elongation factor 1 homolog [Arachis hypogaea] >XP_025638337.1 transcription elongation factor 1 homolog [Arachis hypogaea])

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-42
Identity = 85/89 (95.51%), Postives = 87/89 (97.75%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKSSAKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFSTTV
Sbjct: 1  MGKRKSSAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TAL+EPIDIYSEWIDECERVNNP EDDGA
Sbjct: 61 TALSEPIDIYSEWIDECERVNNP-EDDGA 88

[Close]
BLAST of Carg11343 vs. NCBI nr
Match: XP_011082718.1 (transcription elongation factor 1 homolog [Sesamum indicum] >XP_011082720.1 transcription elongation factor 1 homolog [Sesamum indicum])

HSP 1 Score: 177.2 bits (448), Expect = 2.5e-41
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQESFST V
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDD 88
          TALTEPIDIYSEWIDECERVNNPE+DD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEDDD 87

[Close]
BLAST of Carg11343 vs. NCBI nr
Match: XP_022142747.1 (transcription elongation factor 1 homolog [Momordica charantia])

HSP 1 Score: 176.4 bits (446), Expect = 4.3e-41
Identity = 82/89 (92.13%), Postives = 84/89 (94.38%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FSTT+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQEGFSTTI 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TALTEPIDIYSEWIDECERVNN EEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDDAA 89

[Close]
BLAST of Carg11343 vs. TAIR10
Match: AT5G46030.1 (unknown protein)

HSP 1 Score: 151.0 bits (380), Expect = 3.5e-37
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALTEPIDIYSEWIDECERVNNPE 85
          TALTE IDIYSEWIDECERVN  E
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAE 84

[Close]
BLAST of Carg11343 vs. Swiss-Prot
Match: sp|Q8LHP0|ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.8e-43
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of Carg11343 vs. Swiss-Prot
Match: sp|Q8LEF3|ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 6.3e-36
Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+ESFSTT+
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALTEPIDIYSEWIDECERVNNPE 85
          TALTE IDIYSEWIDECERVN  E
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAE 84

[Close]
BLAST of Carg11343 vs. Swiss-Prot
Match: sp|P36053|ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-20
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRK S + P ++ + KLDT F+C FCNH  SV C +D KN IG  SC IC +SF T +
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDD 88
           +L++P+D+YS+W D  E VN+    D
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNSGRGSD 87

[Close]
BLAST of Carg11343 vs. Swiss-Prot
Match: sp|Q9XVZ8|ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans OX=6239 GN=Y54G11A.11 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.4e-19
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPR-KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTT 60
          MGKRKS  K P + K +  LDT F+CPFCNH    E ++D +  +G  SC +C E F T 
Sbjct: 1  MGKRKSKRKAPTKAKAVMPLDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTN 60

Query: 61 VTALTEPIDIYSEWIDECERVNN 83
          +  L+EPID+YS+W+D CE+ NN
Sbjct: 61 INYLSEPIDVYSDWVDACEQANN 83

[Close]
BLAST of Carg11343 vs. Swiss-Prot
Match: sp|O13868|ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.4e-19
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRK+ AK  P++R   LDT F+C FCNH  SV C +D ++ +G   C IC +S    +
Sbjct: 1  MGKRKAKAKVKPKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLI 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEED 87
          TAL+ PID+YS+WID C+ V N  ++
Sbjct: 61 TALSAPIDVYSDWIDACDAVANQAKE 86

[Close]
BLAST of Carg11343 vs. TrEMBL
Match: tr|A0A199USR0|A0A199USR0_ANACO (Transcription elongation factor 1 homolog OS=Ananas comosus OX=4615 GN=ACMD2_12051 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.4e-42
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKPPPRKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEA+C ICQESFSTTV
Sbjct: 1  MGKRKSRAKPPPRKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEATCRICQESFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TALTEPIDIYSEWIDECERVNN EEDDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEEDDGA 89

[Close]
BLAST of Carg11343 vs. TrEMBL
Match: tr|A0A2I4H1V5|A0A2I4H1V5_9ROSI (Transcription elongation factor 1 homolog OS=Juglans regia OX=51240 GN=LOC109012765 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-41
Identity = 84/89 (94.38%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS AKPPP+KRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQE+FSTTV
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
          TALTEPIDIYSEWIDECERVNN  EDDGA
Sbjct: 61 TALTEPIDIYSEWIDECERVNN-LEDDGA 88

[Close]
BLAST of Carg11343 vs. TrEMBL
Match: tr|A0A0E0AN24|A0A0E0AN24_9ORYZ (Transcription elongation factor 1 homolog OS=Oryza glumipatula OX=40148 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of Carg11343 vs. TrEMBL
Match: tr|I1QCH2|I1QCH2_ORYGL (Transcription elongation factor 1 homolog OS=Oryza glaberrima OX=4538 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

[Close]
BLAST of Carg11343 vs. TrEMBL
Match: tr|A0A0E0EET3|A0A0E0EET3_9ORYZ (Transcription elongation factor 1 homolog OS=Oryza meridionalis OX=40149 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-41
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0 

Query: 1  MGKRKSSAKPPPRKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQESFSTTV 60
          MGKRKS+AKPPP+KRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE+FSTTV
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALTEPIDIYSEWIDECERVNNPEEDDGA 90
           ALTEPIDIYSEWIDECERVNN E+DDGA
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDDGA 89

The following BLAST results are available for this feature:
BLAST of Carg11343 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022922476.12.2e-45100.00transcription elongation factor 1 homolog [Cucurbita moschata] >XP_022985169.1 t... [more]
XP_020100434.16.6e-4294.38transcription elongation factor 1 homolog [Ananas comosus] >XP_020100436.1 trans... [more]
XP_015956405.18.6e-4295.51transcription elongation factor 1 homolog isoform X9 [Arachis duranensis] >XP_01... [more]
XP_011082718.12.5e-4194.25transcription elongation factor 1 homolog [Sesamum indicum] >XP_011082720.1 tran... [more]
XP_022142747.14.3e-4192.13transcription elongation factor 1 homolog [Momordica charantia][more]
BLAST of Carg11343 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G46030.13.5e-3782.14unknown protein[more]
BLAST of Carg11343 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8LHP0|ELOF1_ORYSJ1.8e-4391.01Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399... [more]
sp|Q8LEF3|ELOF1_ARATH6.3e-3682.14Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5... [more]
sp|P36053|ELF1_YEAST1.7e-2049.43Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450... [more]
sp|Q9XVZ8|ELOF1_CAEEL5.4e-1949.40Transcription elongation factor 1 homolog OS=Caenorhabditis elegans OX=6239 GN=Y... [more]
sp|O13868|ELOF1_SCHPO5.4e-1947.67Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 9... [more]
BLAST of Carg11343 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A199USR0|A0A199USR0_ANACO4.4e-4294.38Transcription elongation factor 1 homolog OS=Ananas comosus OX=4615 GN=ACMD2_120... [more]
tr|A0A2I4H1V5|A0A2I4H1V5_9ROSI3.7e-4194.38Transcription elongation factor 1 homolog OS=Juglans regia OX=51240 GN=LOC109012... [more]
tr|A0A0E0AN24|A0A0E0AN24_9ORYZ3.7e-4191.01Transcription elongation factor 1 homolog OS=Oryza glumipatula OX=40148 PE=3 SV=... [more]
tr|I1QCH2|I1QCH2_ORYGL3.7e-4191.01Transcription elongation factor 1 homolog OS=Oryza glaberrima OX=4538 PE=3 SV=1[more]
tr|A0A0E0EET3|A0A0E0EET3_9ORYZ3.7e-4191.01Transcription elongation factor 1 homolog OS=Oryza meridionalis OX=40149 PE=3 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007808Elf1
IPR038567T_Elf1_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11343-RACarg11343-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038567Transcription elongation factor 1 superfamilyGENE3DG3DSA:2.20.25.190coord: 23..83
e-value: 3.1E-27
score: 96.2
IPR007808Transcription elongation factor 1PFAMPF05129Elf1coord: 2..78
e-value: 4.6E-31
score: 106.6
IPR007808Transcription elongation factor 1PANTHERPTHR20934UNCHARACTERIZEDcoord: 1..87
NoneNo IPR availablePANTHERPTHR20934:SF2SUBFAMILY NOT NAMEDcoord: 1..87
NoneNo IPR availableSUPERFAMILYSSF57783Zinc beta-ribboncoord: 1..81

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11343Cla004282Watermelon (97103) v1carwmB0655
Carg11343Csa3G236590Cucumber (Chinese Long) v2carcuB0675
Carg11343MELO3C019389Melon (DHL92) v3.5.1carmeB0651
Carg11343ClCG05G009180Watermelon (Charleston Gray)carwcgB0636
Carg11343CSPI03G19550Wild cucumber (PI 183967)carcpiB0685
Carg11343Cucsa.032410Cucumber (Gy14) v1carcgyB0730
Carg11343CmaCh16G004120Cucurbita maxima (Rimu)carcmaB0924
Carg11343CmoCh16G004440Cucurbita moschata (Rifu)carcmoB0898
Carg11343CmoCh04G005940Cucurbita moschata (Rifu)carcmoB0899
Carg11343Lsi05G001270Bottle gourd (USVL1VR-Ls)carlsiB595
Carg11343Cp4.1LG01g01450Cucurbita pepo (Zucchini)carcpeB0927
Carg11343Cp4.1LG14g03660Cucurbita pepo (Zucchini)carcpeB0926
Carg11343CsGy3G019480Cucumber (Gy14) v2carcgybB0650
Carg11343MELO3C019389.2Melon (DHL92) v3.6.1carmedB0661
Carg11343CsaV3_3G019610Cucumber (Chinese Long) v3carcucB0687
Carg11343Cla97C05G091500Watermelon (97103) v2carwmbB0681
Carg11343Bhi01G001144Wax gourdcarwgoB0771
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11343Carg13178Silver-seed gourdcarcarB051
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11343Cucumber (Gy14) v2carcgybB0653
Carg11343Cucurbita maxima (Rimu)carcmaB0925
Carg11343Wild cucumber (PI 183967)carcpiB0688
Carg11343Cucumber (Chinese Long) v3carcucB0690
Carg11343Watermelon (Charleston Gray)carwcgB0635
Carg11343Watermelon (97103) v2carwmbB0680
Carg11343Wax gourdcarwgoB0772