Cucsa.032410 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.032410
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Transcription elongation factor 1 homolog
Location	scaffold00429 : 1715527 .. 1718049 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATAATCTCTCCCAACTCTATCACCGATCAGGTTCCTCTTCTTTCTTCTCTTTTCTTTTTAGCCTTCCTAGTTCTACCCTTTTTATTAAGCTTTTCACTGGAATATTGTTATGCCTTTTTCGTTACGGCCCCTAACCTAGGGTTCTACTTGTTTTTTGTATCTTGTGGCGTGCTTCCGTTTGAACCTTCTTTACGTTTTTCGTTGCGATTGTTATTTTTTtCATCTTCCTGTTTCTTTCCTTGCGATTGCTGGAAATTCATATCTAGTTTTTTtCTGAATAACTTTAAGTTATGTTATCCGTAGCGGCAGCTGAAATTTCCGGAAGTTTTGGTTATTATTTGTTTTTTATTCTTTTCATGGTCGATGGATGTCTATGATTTTGTAGGGAAGTGATCCTTGCACCTCTAGTACTGTTTTACCTAAGTGCGGTGTTTCATGAATTGGGTATGAACGTTTTGGGATGATGTGTACGGATTATGGATATGAGTTTTACTTTGTGAGATTTCGTAGCTTATCGATTGTGCTTTTTATATGCTAGAAAGATCTATTATTTATATCCTTTTAAGTTTGATTACGGCTCTCATTTTGAAGACTTATTGATATTGTTATTGTTATTGGATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATGTAAGTTTGCATTTTGTTCCTCTTAGGTTCTTGTAACATGCGAGTTTGGGAGGGATATGTTATAAGGACTTAAGTATTTTCGTGGCCTTGTGGAAAAGCTGGACTGATGAATGTGTATAATAATAAGTAACTTGGCTCATGGGCTAGTCTCTGTCTAGGTGTGCCTTGTTTGTTTTGCAATCTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGGTATTCTCTTTAATTCTCTTGTTTGCTATCTGTTGTCTGTGTTTTACACTGCGCTTTGTACTATGTTTCAAATGGAAGCACAAACAGTCTATGGTTCTTTTTtAGGTCTCTTCTTTTAAAGTATTTTTtATGAATAATTTTGTCCTTGTGGAGCAGTGTTAGTTTGATCTGAACTATAATTTGGGCACAGGACTATATGATTATTCTAGTGAACTCATTTTCTCTGTGCTCAAATACACATGTGCTCAAATAGACAGATGAATGGAAGCTTTGTCATGCAGTTGTTCTACGTTCCATCATCACTAGTTTTTCGTTCCGGTTATTGATAGTCTATCAGATGAAAATTCGTCCAATTATGTTTAGGGCATCGTTGTATAATTCAGGTGAATTGAGTTCTGTGTCTAATCCAGGGCTTACTGTGTGTTTTCATTTGTCTGTTGTAAGACCCCTAGTTAAGGAAATTTAGGATTATTCGTGTGGTTATTAGAAGGGGCATATTTGTAAAGCTAAAAAGGTTCGTTAGGCCTTTTTGTTATGTAGAGAGAGGGAGTGCTGTTGGGAGAAAGGGGTGAAGAATTTTGTGGGATTTCCTTTGTGGAAGTTGGAAGAGACTCCTCTCGAAAGGCTAGATTATCTTGTTACTTATCTTGTTATATTTCAATGTTCTTGAGTTTTTGTGTGTGTGCACGTGTTTCTTTGTTTGGTGATATCCTAACATCACATATAAATTTTTGTTGCACTAACATTTCAATTCTTTTACTTTGCAGCCTTGAGTGAGGCAATAGACATGTAAGTAAAATTTTAAAGCTACTGGTTTTTGTCAACATTTGTTGTTGCTCAATAGTGCTTCAGTTAACGTGATGTTtTTTTTTTTttGCTTTTGACCAGATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAGAGGGATCAATTGGAGAAGTATGAAGCTTGATGCTTTCTATGGAAACGAAGCTGGCTATTTGGAAGTTCCTTTTATGAAACTAAATTAAGAGAGGGGGTCTTATTGGTTGGTATAACAACACTTCCACCCTCCACGGTCGTAGCAGTATAGACTAGACAAGTATGTATGTACAGTAGTAATGTTGTAACGGCTTGCACTTGACTTTATTACGGATTTTCTCACGGATGTGTAACTTTCTTTTATGATTTTTAAATCAAGAATCTTGGAGTTGGTAAGTTGTGTTGGATGGAGAGTTGGGGGGGTCCTGAACCATCCTTTATTATTGAATAATTCAATGCTTAATGTAAATGAAATGTTTAAGCATGTTACGAAGTACTAATGGTTGTTATTTCATGCCCATAAGACTCTTCTGAAATTGTTATACACTGATACTTTTGAATTGAGGATGTGGAGTTCGCGTCGAACCAAAACCTTCCTCACTTGGCTGTTT

mRNA sequence

GCATTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATAATCTCTCCCAACTCTATCACCGATCAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAGAGGGATCAATTGGAGAAGTATGAAGCTTGATGCTTTCTATGGAAACGAAGCTGGCTATTTGGAAGTTCCTTTTATGAAACTAAATTAAGAGAGGGGGTCTTATTGGTTGGTATAACAACACTTCCACCCTCCACGGTCGTAGCAGTATAGACTAGACAAGTATGTATGTACAGTAGTAATGTTGTAACGGCTTGCACTTGACTTTATTACGGATTTTCTCACGGATGTGTAACTTTCTTTTATGATTTTTAAATCAAGAATCTTGGAGTTGGTAAGTTGTGTTGGATGGAGAGTTGGGGGGGTCCTGAACCATCCTTTATTATTGAATAATTCAATGCTTAATGTAAATGAAATGTTTAAGCATGTTACGAAGTACTAATGGTTGTTATTTCATGCCCATAAGACTCTTCTGAAATTGTTATACACTGATACTTTTGAATTGAGGATGTGGAGTTCGCGTCGAACCAAAACCTTCCTCACTTGGCTGTTT

Coding sequence (CDS)

ATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

Protein sequence

MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA*

Homology

[Close]

BLAST of Cucsa.032410 vs. Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-42
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
           AL+E IDIYSEWIDECERVNN+EDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of Cucsa.032410 vs. Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.5e-39
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
          TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Cucsa.032410 vs. Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1  MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 61 TALSEAIDIYSEWIDECERVNN 83
           +LS+ +D+YS+W D  E VN+
Sbjct: 61 NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of Cucsa.032410 vs. Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEAIDIYSEWIDECERVN 82
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Cucsa.032410 vs. Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEAIDIYSEWIDECERVN 82
          IT LSE +D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of Cucsa.032410 vs. TrEMBL
Match: A0A0A0LAG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.5e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Cucsa.032410 vs. TrEMBL
Match: W9R774_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.7e-43
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Cucsa.032410 vs. TrEMBL
Match: F6HM52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.0e-42
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMKNLIGEASCRICQESFSTT+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
          TAL+E IDIYSEWIDECERVNNLEDD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDD 86

[Close]

BLAST of Cucsa.032410 vs. TrEMBL
Match: A0A151QZ60_CAJCA (Transcription elongation factor 1 isogeny OS=Cajanus cajan GN=KK1_043332 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.0e-42
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRK+++KP PKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKAKSKPAPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+EAIDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEAIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Cucsa.032410 vs. TrEMBL
Match: M5WI77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014035mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-41
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFC+HGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSSAKPPPKKRMDKLDTVFSCPFCSHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
          TALSE ID+YSEWIDECERVNNLEDD
Sbjct: 61 TALSEPIDVYSEWIDECERVNNLEDD 86

[Close]

BLAST of Cucsa.032410 vs. TAIR10
Match: AT5G46030.1 (AT5G46030.1 unknown protein)

HSP 1 Score: 161.8 bits (408), Expect = 2.0e-40
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
          TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of Cucsa.032410 vs. NCBI nr
Match: gi|449457009|ref|XP_004146241.1| (PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 2.1e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Cucsa.032410 vs. NCBI nr
Match: gi|703076897|ref|XP_010090451.1| (hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 181.8 bits (460), Expect = 5.3e-43
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of Cucsa.032410 vs. NCBI nr
Match: gi|1009161897|ref|XP_015899142.1| (PREDICTED: transcription elongation factor 1 homolog [Ziziphus jujuba])

HSP 1 Score: 179.1 bits (453), Expect = 3.4e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+EAIDIYSEWIDECERVN LEDD A
Sbjct: 61 TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of Cucsa.032410 vs. NCBI nr
Match: gi|743799764|ref|XP_010925579.1| (PREDICTED: transcription elongation factor 1 homolog [Elaeis guineensis])

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-42
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVF CPFCNHG+SVECRIDMKNLIGEA+CRICQESFSTTI
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGSSVECRIDMKNLIGEAACRICQESFSTTI 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDDAA 89
          TAL+E IDIYSEWIDECERVNNLEDDAA
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of Cucsa.032410 vs. NCBI nr
Match: gi|225443562|ref|XP_002277951.1| (PREDICTED: transcription elongation factor 1 homolog isoform X1 [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 5.8e-42
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMKNLIGEASCRICQESFSTT+
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEAIDIYSEWIDECERVNNLEDD 87
          TAL+E IDIYSEWIDECERVNNLEDD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDD 86

The following BLAST results are available for this feature:

BLAST of Cucsa.032410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELOF1_ORYSJ	3.4e-42	90.70	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os0...	[more]
ELOF1_ARATH	3.5e-39	86.05	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 P...	[more]
ELF1_YEAST	1.6e-20	52.44	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
ELOF1_BOVIN	2.8e-20	53.66	Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1	[more]
ELOF1_HUMAN	2.8e-20	53.66	Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1	[more]

BLAST of Cucsa.032410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAG5_CUCSA	1.5e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1	[more]
W9R774_9ROSA	3.7e-43	96.59	Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1	[more]
F6HM52_VITVI	4.0e-42	95.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=...	[more]
A0A151QZ60_CAJCA	9.0e-42	93.18	Transcription elongation factor 1 isogeny OS=Cajanus cajan GN=KK1_043332 PE=4 SV...	[more]
M5WI77_PRUPE	1.2e-41	95.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014035mg PE=4 SV=1	[more]

BLAST of Cucsa.032410 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	2.0e-40	86.05	unknown protein	[more]

BLAST of Cucsa.032410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457009\|ref\|XP_004146241.1\|	2.1e-44	100.00	PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus]	[more]
gi\|703076897\|ref\|XP_010090451.1\|	5.3e-43	96.59	hypothetical protein L484_011426 [Morus notabilis]	[more]
gi\|1009161897\|ref\|XP_015899142.1\|	3.4e-42	95.45	PREDICTED: transcription elongation factor 1 homolog [Ziziphus jujuba]	[more]
gi\|743799764\|ref\|XP_010925579.1\|	4.4e-42	94.32	PREDICTED: transcription elongation factor 1 homolog [Elaeis guineensis]	[more]
gi\|225443562\|ref\|XP_002277951.1\|	5.8e-42	95.35	PREDICTED: transcription elongation factor 1 homolog isoform X1 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.032410.1	Cucsa.032410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 2..86 score: 4.6
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..78 score: 2.3
None	No IPR available	unknown	SSF57783	Zinc beta-ribbon	coord: 1..81 score: 5.95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.032410	Cla004282	Watermelon (97103) v1	cgywmB002
Cucsa.032410	Csa3G236590	Cucumber (Chinese Long) v2	cgycuB003
Cucsa.032410	MELO3C019389	Melon (DHL92) v3.5.1	cgymeB002
Cucsa.032410	ClCG05G009180	Watermelon (Charleston Gray)	cgywcgB003
Cucsa.032410	CSPI03G19550	Wild cucumber (PI 183967)	cgycpiB003
Cucsa.032410	CmaCh16G004120	Cucurbita maxima (Rimu)	cgycmaB0007
Cucsa.032410	CmaCh04G005580	Cucurbita maxima (Rimu)	cgycmaB0012
Cucsa.032410	CmoCh04G005940	Cucurbita moschata (Rifu)	cgycmoB0012
Cucsa.032410	CmoCh16G004440	Cucurbita moschata (Rifu)	cgycmoB0006
Cucsa.032410	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	cgylsiB003
Cucsa.032410	Cp4.1LG14g03660	Cucurbita pepo (Zucchini)	cgycpeB0005
Cucsa.032410	Cp4.1LG01g01450	Cucurbita pepo (Zucchini)	cgycpeB0007
Cucsa.032410	MELO3C019389.2	Melon (DHL92) v3.6.1	cgymedB002
Cucsa.032410	CsaV3_3G019610	Cucumber (Chinese Long) v3	cgycucB006
Cucsa.032410	Cla97C05G091500	Watermelon (97103) v2	cgywmbB003
Cucsa.032410	Bhi01G001144	Wax gourd	cgywgoB003
Cucsa.032410	Carg13178	Silver-seed gourd	carcgyB0048
Cucsa.032410	Carg11343	Silver-seed gourd	carcgyB0730

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None