CSPI03G19550 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G19550
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transcription elongation factor 1 homolog
Location	Chr3 : 15335327 .. 15339317 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACTTTTATCCCTTCAATGTATGCTTATATCCATGTTGCCTTTGAGGTTCAACTGGAGTCGACAACTTCATGAGTTTTCCTTCAAAGAAGTTTATCTAGACTATCAAAATACAATGACTAGCATGGTTCAAGCAACAAATAATATTTTCAGAGATGAAGGCTTACTGGTTGGTTGATTATGCTTGTGCAAAAAATAATGTTATATGTATTCTGATGGTATTTACACGGGTTTTGATTAAGAGATGGAATTCCATACTTATAAAGTGTTCAAAATTGATTGGAAATGTACGAATATTACTAAGTGTATTATAGCATATAATATTAAAGTGTTGTCTATTTGTTTCTATATGAGTGTCATATATTATGACATTATTATCATTCAAATGATTCGTGTAATGGCGGAGCGACAAGAAGAACAGAGAAAAAATGTAGTAATTAAGGAATTTGCAACAGAAAAAAAGTCATAATGTATGAATTTGTGACATTTCTTAATTGTCACGATTGACCTATATATCTTTGATAAGAAAAAAATACCATCAATAGCGAAACAATGACATTTGATTTTATAAAAAAAACTGTCACGATTGACATATCGACATATCCTTGATATTTAAAAAATGTCATAATAAATAAATTTGCGACACTTTTTTAACTGTCGTTAATACGCAAATGATGACAGTTATTTGTTGTCATAATATAAAATATGACAATTATTTGTTGTCATTAAATAGTAATTAATGACATTCATTTTTTGCCATGAAAAAACTTATTACGATAGTTTTTGAAAACTGACATGGAAGGACTTTCTATGACTCCCGATACTATGACTACAAATAACGGTAACATATTTTATTCGTGACAGAAAATAACTGTCGTCGTATACCATTTTTGTTGTAGTGAATACTAACAAAATCAACGTATAAAAATAAACAAAATCATTTAAAATCAAATTTAATTCAAAATACACATCGAAGAAATTAGAAAAAAATCACAGACAAAGTTAAATTACTTCGATTAACAACAATTATATTTCATATTGGAAATAATGCACCATTGATATCCTAAAATCAAGATTAAGATAGGAAGAACAAATTGTTTTCCCCGCATAAGAAATGATGATTGAGATCTTAAAAATGGGAGAAGAATATGCATGTTATTGAAGAAACAAATTGTTTTTCCTGTAAGAGAAAGAATGATAAGTGGAGACTAAATAAGTGATGATTATGCAATAAAAGAGAGAAAAGAAATAAAGTTATTGAACCATAATTTGAGAATAACAACAAATTAAAAGATGGAGATCATTTTAAGAAATGAGAATTTTACAATAACATGTTCTTAAAAGGCTATTCACTACCATTTTTCTTTCAAAATATAACATAATTTTAGATTCGATGACACTATAAACACCTCTAGAAAATGATAGAAGTCTATTTGTGTCTATAATCGAAAAAATTATATTTACTCTCTCCTCCGTTTGGATGTATTTGGAGATTGTGAGCGTTGGTTGAATGGAAATGTGAAAGCCATATACAAGGTTTTATTCAAAGAACCAAAAGAAGATTTATTTCAAAGAAAATAAAGAGTTTATATATTGGAAAATACAAAATGGTCCTCCAAGCCATATACAAGGATGGGTGGGGAGATAAGATTTGGCATTTTATTAGCTGCTTTTCCGTAGTTGTAGATTTAACTTAGGGGGATTTTAATCAAATCTAATCTCACACGTATTTTAATACAATTTTTTGAGGCCTTTCCGTAGTTTTAGAATTAACTTAGGGGGATTTTAATCAAATCTAATCTCACATAATTTTAATACAATTTTTTGAGGCTTTTCCGTAGTTTTAGATTCTACGATTAATTCAGGGGTATTTTCGTCAAATTGATTCCTACAGCTCTATAAATACCACCCCTCCTCCTCCTTTTTGGTTGCATTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATTATCTCTCCCAACTCTATCACCGATCAGGTTCCTCTTCTTTCTTCTCTTTTCTTTTTAGCCTTCCTAGTTCTACCCTTTTTATTAAGCTTTTCACTGGAATATTGTTATGCCTTTTTCGTTACGGCCCCTAACCTAGGGTTCTACTTGTTTTTTGTATCTTGTGGCGTGCTTCCGTTTGAACCTTCTTTACGTTTTTCGTTGCGATTGTTATTTTTTTCATCTTCCTGTTTCTTTCCTTGCGATTGCTGGAAATTCATATCTAGTTTTTTTCTGAATAACTTGAAGTTATGTTATCCGTAGCGGCAGCTGAAATTTCCGGAAGTTTTGGTTATTATTTGTTTTTTATTCTTTTCATGGTCGATGGATGTCTATGATTTTGGAGGGAAGTGATCCTTGCACCTCTAGTACTGTTTTACCTAAGTGCGGTGTTTCATGAATTGGGTATGAACGTTTTGGGATGATGTGTACGGATTATGGACATGAGTTTTACTTTGTGAGATTTCGTAGCTTATCGATTGTGCTTTTTATATGCTAGAAAGATCTATTATTTATATCCTTTTAAGTTTGATTACGGCTCTCATTTTGAAGACTTATTGATATTGTTATTGTTATTGGATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATGTAAGTTTGCATTTTGTTCCTCTTAGGTTCTTGTAACATGCGAGTTTGGGAGGGATATGTTATAAGGACTTAAGTATTTTCGTGGCCTTGTGGAAAAGCTGGACTGATGAATGTTGTATAATAATAAGTAACTTGGCTCATGGGCTAGTCTCTGTCTAGGTGTGCCTTGTTTGTTTTGCAATCTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGGTATTCTCTTTGATTCTCTTGTTTGCTATCTGTTGTCTGTGTTTTACACTGCGCTTTGTACTATGTTTCAAATGGAAGCACAAACAGTCTATGGTTCTTTTTTAGGTCTCTTCTTTTAAAGTATTTTTTATGAATATTTTTGTCCTTGTGGAGCAGTGTTAGTTTGATCTGAACTATAATTTGGGCACAGGACTATATGATTATTCTAGTAAACTCATTTTCTCTGTGCTCAAATAGACATGTGCTCAAATAGACAGATGAATGGAAGCTTTGTCATGCAGTTGTTCTACGTTCCATCATCACTAGTTTTTTGTTCCGGTTATAGATAGTCTATCAGATGAAAATTCGTCCAATTATGTTTAGGGCATCGTTGTATAATTCAGGTGAATTGAGTTCTGTGTCTAATCCAGGGCTTACTGTGTGTTTTCATTTGTCTGTTGTAAGACCCCTAGTTAAGGAAATTTAGGATTATTCGTGTGGTTATTAGAAGGGGCATATTTGTAAAGCTAAAAAGGTTCGTTAGGCCTTTTTGTTATATAGAGAGAGGGAGTGCTGTTGGGAGAAAGGGGTGAAGAATTTTGTGGGATTTCCTTTGTGGAAGTTGGAAGAGACTGTCCTCTCGAAAGGCTAGATTATCTTGTTACTTATCTTGTTATATTTCAATGTATTTTTATATTTGAATGTTCTTGAGTTTTTGTGTGTGTGCACGTGTTTCTTTGTTTGGTGATATCCTAACATCACATATAAGTTTTTGTTGCACTAACATTTCAATTCTTTTACTTTGCAGCCTTGAGTGAGGCAATAGACATGTAAGTAAAATTTTAAAGCTACTGGTTTTTGTCAACATTTGTTGTTGCTCAATAGTGCTTCAGTTAACGTGATGTTTTTTTTTTGTTTTTTTGCTTTTGACCAGATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGATGATGCGGCCTAG

mRNA sequence

ATGAGACTTTTATCCCTTCAATGTATGCTTATATCCATGTTGCCTTTGAGGTTCAACTGGAGTCGACAACTTCATGAGTTTTCCTTCAAAGAAGTTTATCTAGACTATCAAAATACAATGACTAGCATGGTTCAAGCAACAAATAATATTTTCAGAGATGAAGGCTTACTGCTCTATAAATACCACCCCTCCTCCTCCTTTTTGGTTGCATTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATTATCTCTCCCAACTCTATCACCGATCAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGATGATGCGGCCTAG

Coding sequence (CDS)

ATGAGACTTTTATCCCTTCAATGTATGCTTATATCCATGTTGCCTTTGAGGTTCAACTGGAGTCGACAACTTCATGAGTTTTCCTTCAAAGAAGTTTATCTAGACTATCAAAATACAATGACTAGCATGGTTCAAGCAACAAATAATATTTTCAGAGATGAAGGCTTACTGCTCTATAAATACCACCCCTCCTCCTCCTTTTTGGTTGCATTCTTCAATCCGACCTGCGCTACCATTTCAACTGCGAACGATTATCTCTCCCAACTCTATCACCGATCAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGATGATGCGGCCTAG

Homology

[Close]

BLAST of CSPI03G19550 vs. Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-41
Identity = 78/86 (90.70%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1   MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDD 187
            AL+E IDIYSEWIDECERVNN+EDD
Sbjct: 61  NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of CSPI03G19550 vs. Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-38
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDD 187
           TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of CSPI03G19550 vs. Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.6e-20
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1   MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 161 TALSEAIDIYSEWIDECERVNN 183
            +LS+ +D+YS+W D  E VN+
Sbjct: 61  NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of CSPI03G19550 vs. Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.8e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 160
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 161 ITALSEAIDIYSEWIDECERVN 182
           IT LSE +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of CSPI03G19550 vs. Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.8e-20
Identity = 44/82 (53.66%), Postives = 56/82 (68.29%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 160
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 161 ITALSEAIDIYSEWIDECERVN 182
           IT LSE +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of CSPI03G19550 vs. TrEMBL
Match: A0A0A0LAG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.1e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDDAA 189
           TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of CSPI03G19550 vs. TrEMBL
Match: W9R774_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDDAA 189
           TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of CSPI03G19550 vs. TrEMBL
Match: F6HM52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMKNLIGEASCRICQESFSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDD 187
           TAL+E IDIYSEWIDECERVNNLEDD
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDD 86

[Close]

BLAST of CSPI03G19550 vs. TrEMBL
Match: A0A151QZ60_CAJCA (Transcription elongation factor 1 isogeny OS=Cajanus cajan GN=KK1_043332 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.5e-41
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRK+++KP PKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKAKSKPAPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDDAA 189
           TAL+EAIDIYSEWIDECERVNNLEDD A
Sbjct: 61  TALTEAIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of CSPI03G19550 vs. TrEMBL
Match: M5WI77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014035mg PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.3e-41
Identity = 82/86 (95.35%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKS AKPPPKKRMDKLDTVFSCPFC+HGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSSAKPPPKKRMDKLDTVFSCPFCSHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDD 187
           TALSE ID+YSEWIDECERVNNLEDD
Sbjct: 61  TALSEPIDVYSEWIDECERVNNLEDD 86

[Close]

BLAST of CSPI03G19550 vs. TAIR10
Match: AT5G46030.1 (AT5G46030.1 unknown protein)

HSP 1 Score: 161.0 bits (406), Expect = 7.2e-40
Identity = 74/86 (86.05%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDD 187
           TAL+EAIDIYSEWIDECERVN  EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of CSPI03G19550 vs. NCBI nr
Match: gi|449457009|ref|XP_004146241.1| (PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 5.9e-44
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDDAA 189
           TALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of CSPI03G19550 vs. NCBI nr
Match: gi|703076897|ref|XP_010090451.1| (hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDDAA 189
           TAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of CSPI03G19550 vs. NCBI nr
Match: gi|297740448|emb|CBI30630.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 178.7 bits (452), Expect = 9.4e-42
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 1


Query: 85  YLSQLYHRSASLTTQD---MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMK 144
           Y + ++ +S +   +D   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMK
Sbjct: 15  YKAWVFSKSEAFAEKDLSYMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMK 74

Query: 145 NLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD 187
           NLIGEASCRICQESFSTT+TAL+E IDIYSEWIDECERVNNLEDD
Sbjct: 75  NLIGEASCRICQESFSTTVTALTEPIDIYSEWIDECERVNNLEDD 119

[Close]

BLAST of CSPI03G19550 vs. NCBI nr
Match: gi|1009161897|ref|XP_015899142.1| (PREDICTED: transcription elongation factor 1 homolog [Ziziphus jujuba])

HSP 1 Score: 178.7 bits (452), Expect = 9.4e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDDAA 189
           TAL+EAIDIYSEWIDECERVN LEDD A
Sbjct: 61  TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of CSPI03G19550 vs. NCBI nr
Match: gi|743799764|ref|XP_010925579.1| (PREDICTED: transcription elongation factor 1 homolog [Elaeis guineensis])

HSP 1 Score: 178.3 bits (451), Expect = 1.2e-41
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 101 MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 160
           MGKRKSRAKPPPKKRMDKLDTVF CPFCNHG+SVECRIDMKNLIGEA+CRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFCCPFCNHGSSVECRIDMKNLIGEAACRICQESFSTTI 60

Query: 161 TALSEAIDIYSEWIDECERVNNLEDDAA 189
           TAL+E IDIYSEWIDECERVNNLEDDAA
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDAA 88

The following BLAST results are available for this feature:

BLAST of CSPI03G19550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELOF1_ORYSJ	1.2e-41	90.70	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os0...	[more]
ELOF1_ARATH	1.3e-38	86.05	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 P...	[more]
ELF1_YEAST	4.6e-20	52.44	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
ELOF1_BOVIN	7.8e-20	53.66	Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1	[more]
ELOF1_HUMAN	7.8e-20	53.66	Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1	[more]

BLAST of CSPI03G19550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAG5_CUCSA	4.1e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1	[more]
W9R774_9ROSA	1.0e-42	96.59	Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1	[more]
F6HM52_VITVI	1.5e-41	95.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=...	[more]
A0A151QZ60_CAJCA	2.5e-41	93.18	Transcription elongation factor 1 isogeny OS=Cajanus cajan GN=KK1_043332 PE=4 SV...	[more]
M5WI77_PRUPE	4.3e-41	95.35	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014035mg PE=4 SV=1	[more]

BLAST of CSPI03G19550 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	7.2e-40	86.05	unknown protein	[more]

BLAST of CSPI03G19550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457009\|ref\|XP_004146241.1\|	5.9e-44	100.00	PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus]	[more]
gi\|703076897\|ref\|XP_010090451.1\|	1.5e-42	96.59	hypothetical protein L484_011426 [Morus notabilis]	[more]
gi\|297740448\|emb\|CBI30630.3\|	9.4e-42	80.95	unnamed protein product [Vitis vinifera]	[more]
gi\|1009161897\|ref\|XP_015899142.1\|	9.4e-42	95.45	PREDICTED: transcription elongation factor 1 homolog [Ziziphus jujuba]	[more]
gi\|743799764\|ref\|XP_010925579.1\|	1.2e-41	94.32	PREDICTED: transcription elongation factor 1 homolog [Elaeis guineensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048096	chromatin-mediated maintenance of transcription
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0008023	transcription elongation factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G19550.1	CSPI03G19550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 102..186 score: 4.6
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 102..178 score: 2.1
None	No IPR available	unknown	SSF57783	Zinc beta-ribbon	coord: 101..181 score: 5.95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G19550	Cla004282	Watermelon (97103) v1	cpiwmB242
CSPI03G19550	Csa3G236590	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G19550	MELO3C019389	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G19550	ClCG05G009180	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G19550	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G19550	MELO3C019389.2	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G19550	CsaV3_3G019610	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G19550	Cla97C05G091500	Watermelon (97103) v2	cpiwmbB221
CSPI03G19550	Bhi01G001144	Wax gourd	cpiwgoB283
CSPI03G19550	Cucsa.032410	Cucumber (Gy14) v1	cgycpiB003
CSPI03G19550	CmaCh16G004120	Cucurbita maxima (Rimu)	cmacpiB326
CSPI03G19550	CmoCh16G004440	Cucurbita moschata (Rifu)	cmocpiB315
CSPI03G19550	CmoCh04G005940	Cucurbita moschata (Rifu)	cmocpiB698
CSPI03G19550	Cp4.1LG01g01450	Cucurbita pepo (Zucchini)	cpecpiB388
CSPI03G19550	Cp4.1LG14g03660	Cucurbita pepo (Zucchini)	cpecpiB208
CSPI03G19550	CsGy3G019480	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G19550	Carg11343	Silver-seed gourd	carcpiB0685
CSPI03G19550	Carg13178	Silver-seed gourd	carcpiB0047

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None