CsGy3G019480 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G019480
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Transcription elongation factor 1 homolog
Location	Chr3 : 15709638 .. 15711616 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATGTAAGTTTGCATTTTGTTCCTCTTAGGTTCTTGTAACATGCGAGTTTGGGAGGGATATGTTATAAGGACTTAAGTATTTTCGTGGCCTTGTGGAAAAGCTGGACTGATGAATGTGTATAATAATAAGTAACTTGGCTCATGGGCTAGTCTCTGTCTAGGTGTGCCTTGTTTGTTTTGCAATCTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGGTATTCTCTTTAATTCTCTTGTTTGCTATCTGTTGTCTGTGTTTTACACTGCGCTTTGTACTATGTTTCAAATGGAAGCACAAACAGTCTATGGTTCTTTTTTAGGTCTCTTCTTTTAAAGTATTTTTTATGAATAATTTTGTCCTTGTGGAGCAGTGTTAGTTTGATCTGAACTATAATTTGGGCACAGGACTATATGATTATTCTAGTGAACTCATTTTCTCTGTGCTCAAATACACATGTGCTCAAATAGACAGATGAATGGAAGCTTTGTCATGCAGTTGTTCTACGTTCCATCATCACTAGTTTTTCGTTCCGGTTATTGATAGTCTATCAGATGAAAATTCGTCCAATTATGTTTAGGGCATCGTTGTATAATTCAGGTGAATTGAGTTCTGTGTCTAATCCAGGGCTTACTGTGTGTTTTCATTTGTCTGTTGTAAGACCCCTAGTTAAGGAAATTTAGGATTATTCGTGTGGTTATTAGAAGGGGCATATTTGTAAAGCTAAAAAGGTTCGTTAGGCCTTTTTGTTATGTAGAGAGAGGGAGTGCTGTTGGGAGAAAGGGGTGAAGAATTTTGTGGGATTTCCTTTGTGGAAGTTGGAAGAGACTCCTCTCGAAAGGCTAGATTATCTTGTTACTTATCTTGTTATATTTCAATGTTCTTGAGTTTTTGTGTGTGTGCACGTGTTTCTTTGTTTGGTGATATCCTAACATCACATATAAATTTTTGTTGCACTAACATTTCAATTCTTTTACTTTGCAGCCTTGAGTGAGGCAATAGACATGTAAGTAAAATTTTAAAGCTACTGGTTTTTGTCAACATTTGTTGTTGCTCAATAGTGCTTCAGTTAACGTGATGTTTTTTTTTTTTTTGCTTTTGACCAGATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAGAGGGATCAATTGGAGAAGTATGAAGCTTGATGCTTTCTATGGAAACGAAGCTGGCTATTTGGAAGTTCCTTTTATGAAACTAAATTAAGAGAGGGGGTCTTATTGGTTGGTATAACAACACTTCCACCCTCCACGGTCGTAGCAGTATAGACTAGACAAGTATGTATGTACAGTAGTAATGTTGTAACGGCTTGCACTTGACTTTATTACGGATTTTCTCACGGATGTGTAACTTTCTTTTATGATTTTTAAATCAAGAATCTTGGAGTTGGTAAGTTGTGTTGGATGGAGAGTTGGGGGGGTCCTGAACCATCCTTTATTATTGAATAATTCAATGCTTAATGTAAATGAAATGTTTAAGCATGTTACGAAGTACTAATGGTTGTTATTTCATGCCCATAAGACTCTTCTGAAATTGTTATACACTGATACTTTTGAATTGAGGATGTGGAGTTCGCGTCGAACCAAAACCTTCCTCACTTGGCTGTTTAGACCTGACTTTTCTTAAAGCGCTTTTAAGCTTGTTCTTTTTAAACCATTTGCTAATTAATGTGGATGTATAATTCCTTTTGTGTTTCAATAAATCATCTCCAGCTGACATTTGGG

mRNA sequence

ATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATGTGTGCCTTGTTTGTTTTGCAATCTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAGAGGGATCAATTGGAGAAGTATGAAGCTTGATGCTTTCTATGGAAACGAAGCTGGCTATTTGGAAGTTCCTTTTATGAAACTAAATTAAGAGAGGGGGTCTTATTGGTTGGTATAACAACACTTCCACCCTCCACGGTCGTAGCAGTATAGACTAGACAAGTATGTATGTACAGTAGTAATGTTGTAACGGCTTGCACTTGACTTTATTACGGATTTTCTCACGGATGTGTAACTTTCTTTTATGATTTTTAAATCAAGAATCTTGGAGTTGGTAAGTTGTGTTGGATGGAGAGTTGGGGGGGTCCTGAACCATCCTTTATTATTGAATAATTCAATGCTTAATGTAAATGAAATGTTTAAGCATGTTACGAAGTACTAATGGTTGTTATTTCATGCCCATAAGACTCTTCTGAAATTGTTATACACTGATACTTTTGAATTGAGGATGTGGAGTTCGCGTCGAACCAAAACCTTCCTCACTTGGCTGTTTAGACCTGACTTTTCTTAAAGCGCTTTTAAGCTTGTTCTTTTTAAACCATTTGCTAATTAATGTGGATGTATAATTCCTTTTGTGTTTCAATAAATCATCTCCAGCTGACATTTGGG

Coding sequence (CDS)

ATGCGAACAGCCAGCCTTACGACACAGGATATGGGGAAACGTAAGTCAAGAGCAAAGCCCCCACCTAAGAAAAGAATGGACAAGCTCGATACTGTTTTTAGCTGTCCCTTCTGCAATCATGGGACCAGCGTTGAATGTCGCATGTGTGCCTTGTTTGTTTTGCAATCTGACGAGGGTGTTTGTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTCGGATTTGCCAAGAAAGCTTTAGCACAACTATTACAGCCTTGAGTGAGGCAATAGACATATATAGTGAGTGGATCGACGAATGTGAGCGGGTCAACAACCTTGAAGACGATGCTGCCTAG

Protein sequence

MRTASLTTQDMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA

Homology

[Close]

BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_004146241.1 (PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus] >XP_008456008.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis melo] >XP_011651301.1 PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus] >KGN57642.1 hypothetical protein Csa_3G236590 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 8.0e-40
Identity = 87/105 (82.86%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_010090451.1 (transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509.1 hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 167.9 bits (424), Expect = 2.0e-38
Identity = 84/105 (80.00%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEASCRICQESFSTTITAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61  IGEASCRICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of CsGy3G019480 vs. NCBI nr
Match: PON57115.1 (Transcription elongation factor [Trema orientalis] >PON77937.1 Transcription elongation factor [Parasponia andersonii])

HSP 1 Score: 166.4 bits (420), Expect = 5.7e-38
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEA+CRICQESFSTT+TAL+E IDIYSEWIDECERVNNLE+DAA
Sbjct: 61  IGEAACRICQESFSTTVTALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_015899142.1 (transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 transcription elongation factor 1 homolog [Ziziphus jujuba])

HSP 1 Score: 165.2 bits (417), Expect = 1.3e-37
Identity = 83/105 (79.05%), Postives = 85/105 (80.95%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEA CRICQESFSTTITAL+EAIDIYSEWIDECERVN LEDD A
Sbjct: 61  IGEAVCRICQESFSTTITALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of CsGy3G019480 vs. NCBI nr
Match: XP_010242461.1 (PREDICTED: transcription elongation factor 1 homolog [Nelumbo nucifera] >XP_019051463.1 PREDICTED: transcription elongation factor 1 homolog [Nelumbo nucifera])

HSP 1 Score: 164.9 bits (416), Expect = 1.7e-37
Identity = 82/105 (78.10%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHG+SVECR+                 DMKN 
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGSSVECRL-----------------DMKNS 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEA+CRICQE+FSTTITALSE IDIYSEWIDECERVNNLEDDAA
Sbjct: 61  IGEATCRICQETFSTTITALSEPIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of CsGy3G019480 vs. TAIR10
Match: AT5G46030.1 (unknown protein)

HSP 1 Score: 143.3 bits (360), Expect = 9.4e-35
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC                   DMK+L
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVEC-----------------IIDMKHL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLE 112
           IG+A+CRIC+ESFSTTITAL+EAIDIYSEWIDECERVN  E
Sbjct: 61  IGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAE 84

[Close]

BLAST of CsGy3G019480 vs. Swiss-Prot
Match: sp|Q8LHP0|ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.1e-37
Identity = 77/103 (74.76%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECR+                 DMKNL
Sbjct: 1   MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDD 114
           IGEASCRICQE+FSTT+ AL+E IDIYSEWIDECERVNN+EDD
Sbjct: 61  IGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of CsGy3G019480 vs. Swiss-Prot
Match: sp|Q8LEF3|ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-33
Identity = 71/101 (70.30%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC                   DMK+L
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVEC-----------------IIDMKHL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLE 112
           IG+A+CRIC+ESFSTTITAL+EAIDIYSEWIDECERVN  E
Sbjct: 61  IGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAE 84

[Close]

BLAST of CsGy3G019480 vs. Swiss-Prot
Match: sp|Q9XVZ8|ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans OX=6239 GN=Y54G11A.11 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-17
Identity = 47/100 (47.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 11  MGKRKSRAKPPPK-KRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKN 70
           MGKRKS+ K P K K +  LDT F+CPFCNH                 E VC V  D + 
Sbjct: 1   MGKRKSKRKAPTKAKAVMPLDTQFNCPFCNH-----------------ERVCEVKMDREK 60

Query: 71  LIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNN 110
            +G  SCR+C E F T I  LSE ID+YS+W+D CE+ NN
Sbjct: 61  NVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83

[Close]

BLAST of CsGy3G019480 vs. Swiss-Prot
Match: sp|P36053|ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=ELF1 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.1e-16
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRK   + P K+ + KLDT F+C FCNH  SV C +                 D KN 
Sbjct: 1   MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTL-----------------DKKNS 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNN 110
           IG  SC+IC +SF T I +LS+ +D+YS+W D  E VN+
Sbjct: 61  IGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of CsGy3G019480 vs. Swiss-Prot
Match: sp|O13868|ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.5e-16
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRK++AK  PK+R   LDT F+C FCNH  SV C +                 D ++ 
Sbjct: 1   MGKRKAKAKVKPKRRAPPLDTTFTCLFCNHEKSVSCSL-----------------DKQSG 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNN 110
           +G   C+IC +S    ITALS  ID+YS+WID C+ V N
Sbjct: 61  VGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVAN 82

[Close]

BLAST of CsGy3G019480 vs. TrEMBL
Match: tr|A0A1S3C2B7|A0A1S3C2B7_CUCME (Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC103496063 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.3e-40
Identity = 87/105 (82.86%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of CsGy3G019480 vs. TrEMBL
Match: tr|A0A0A0LAG5|A0A0A0LAG5_CUCSA (Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G236590 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.3e-40
Identity = 87/105 (82.86%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA
Sbjct: 61  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of CsGy3G019480 vs. TrEMBL
Match: tr|W9R774|W9R774_9ROSA (Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_011426 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 84/105 (80.00%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEASCRICQESFSTTITAL+E IDIYSEWIDECERVNNLEDD A
Sbjct: 61  IGEASCRICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of CsGy3G019480 vs. TrEMBL
Match: tr|A0A2P5C7Z2|A0A2P5C7Z2_9ROSA (Transcription elongation factor 1 homolog OS=Trema orientalis OX=63057 GN=TorRG33x02_294290 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.8e-38
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEA+CRICQESFSTT+TAL+E IDIYSEWIDECERVNNLE+DAA
Sbjct: 61  IGEAACRICQESFSTTVTALTEPIDIYSEWIDECERVNNLEEDAA 88

[Close]

BLAST of CsGy3G019480 vs. TrEMBL
Match: tr|A0A2P5DXC0|A0A2P5DXC0_PARAD (Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=PanWU01x14_022910 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 3.8e-38
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 11  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRMCALFVLQSDEGVCMVFSDMKNL 70
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECR+                 DMKNL
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRI-----------------DMKNL 60

Query: 71  IGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNNLEDDAA 116
           IGEA+CRICQESFSTT+TAL+E IDIYSEWIDECERVNNLE+DAA
Sbjct: 61  IGEAACRICQESFSTTVTALTEPIDIYSEWIDECERVNNLEEDAA 88

The following BLAST results are available for this feature:

BLAST of CsGy3G019480 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146241.1	8.0e-40	82.86	PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus] >XP_00845...	[more]
XP_010090451.1	2.0e-38	80.00	transcription elongation factor 1 homolog isoform X1 [Morus notabilis] >EXB39509...	[more]
PON57115.1	5.7e-38	78.10	Transcription elongation factor [Trema orientalis] >PON77937.1 Transcription elo...	[more]
XP_015899142.1	1.3e-37	79.05	transcription elongation factor 1 homolog [Ziziphus jujuba] >XP_015899143.1 tran...	[more]
XP_010242461.1	1.7e-37	78.10	PREDICTED: transcription elongation factor 1 homolog [Nelumbo nucifera] >XP_0190...	[more]

BLAST of CsGy3G019480 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	9.4e-35	70.30	unknown protein	[more]

BLAST of CsGy3G019480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8LHP0\|ELOF1_ORYSJ	1.1e-37	74.76	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica OX=399...	[more]
sp\|Q8LEF3\|ELOF1_ARATH	1.7e-33	70.30	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana OX=3702 GN=At5...	[more]
sp\|Q9XVZ8\|ELOF1_CAEEL	2.2e-17	47.00	Transcription elongation factor 1 homolog OS=Caenorhabditis elegans OX=6239 GN=Y...	[more]
sp\|P36053\|ELF1_YEAST	1.1e-16	43.43	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
sp\|O13868\|ELOF1_SCHPO	5.5e-16	43.43	Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe (strain 9...	[more]

BLAST of CsGy3G019480 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2B7\|A0A1S3C2B7_CUCME	5.3e-40	82.86	Transcription elongation factor 1 homolog OS=Cucumis melo OX=3656 GN=LOC10349606...	[more]
tr\|A0A0A0LAG5\|A0A0A0LAG5_CUCSA	5.3e-40	82.86	Transcription elongation factor 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_3G23...	[more]
tr\|W9R774\|W9R774_9ROSA	1.3e-38	80.00	Transcription elongation factor 1 homolog OS=Morus notabilis OX=981085 GN=L484_0...	[more]
tr\|A0A2P5C7Z2\|A0A2P5C7Z2_9ROSA	3.8e-38	78.10	Transcription elongation factor 1 homolog OS=Trema orientalis OX=63057 GN=TorRG3...	[more]
tr\|A0A2P5DXC0\|A0A2P5DXC0_PARAD	3.8e-38	78.10	Transcription elongation factor 1 homolog OS=Parasponia andersonii OX=3476 GN=Pa...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038567	T_Elf1_sf
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048096	chromatin-mediated maintenance of transcription
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0008023	transcription elongation factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019480.1	CsGy3G019480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 12..48 e-value: 2.4E-10 score: 40.2 coord: 60..105 e-value: 1.0E-13 score: 51.0
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 66..115 coord: 6..50
IPR038567	Transcription elongation factor 1 superfamily	GENE3D	G3DSA:2.20.25.190		coord: 54..109 e-value: 9.6E-19 score: 69.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR20934:SF2	SUBFAMILY NOT NAMED	coord: 66..115 coord: 6..50
None	No IPR available	SUPERFAMILY	SSF57783	Zinc beta-ribbon	coord: 11..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G019480	Cla004282	Watermelon (97103) v1	cgybwmB229
CsGy3G019480	Csa3G236590	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G019480	MELO3C019389	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G019480	ClCG05G009180	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G019480	CSPI03G19550	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G019480	CmaCh16G004120	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G019480	CmoCh04G005940	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G019480	CmoCh16G004440	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G019480	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G019480	Cp4.1LG01g01450	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G019480	Cp4.1LG14g03660	Cucurbita pepo (Zucchini)	cgybcpeB317
CsGy3G019480	MELO3C019389.2	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G019480	CsaV3_3G019610	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G019480	Cla97C05G091500	Watermelon (97103) v2	cgybwmbB206
CsGy3G019480	Bhi01G001144	Wax gourd	cgybwgoB271
CsGy3G019480	Carg13178	Silver-seed gourd	carcgybB0043
CsGy3G019480	Carg11343	Silver-seed gourd	carcgybB0650

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None