ClCG05G009180 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G009180
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Transcription elongation factor, putative
Location	CG_Chr05 : 9976633 .. 9979343 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTATAAATACCACGGCCTCTTTCAATTCCTTCTTCCATTCTTCAATTCGACGAGCGATACGATTGCAACTGCGAACGACAATCCCTCCCAATTCGATCAGCGATCAGGTGCGTCCTCTTTATTCTCTCTTTTCGTAGGGTTCGTAGTTCTAGGGTTTTATCAAGCTTTTGACTGGCAAATTATTGTGCTTTTGTCCTTACTGCCTGCAACTTAGGGTTTTACTTGTTGTTGTATCTTGTGGTGTGCTTACCGTTCTGTGTAATTTTGAACGTTCTTTGCGTTTTTCGTTTCGATTGGTTATTCTTTCATGTAGTTTCAATTTTTTTTGGTGGGGGTGGAGAATAGAATTTGCGAGACGGCGATTGAGTAACTTTTAGTTATGTTATCCGTGGCGAGAATAGAATTTTCCGGAACTTTAGTTATTATTTGCGTTTGGTTCTTTCCATAGTCGATGGATTTCTACGATTTTGTAGGGAGTGAAATTTGCATCTCTAGTATCGTTTTACTTAATTTCGGTATTTCATCAATTGGGTATGAACGTTTTGGGATAATGAGGATGGGTGGTGAATATGAGTTTCACTGTATGATGATTGGTAGCTTATTGACTGTTCTTGACCCGTTCCTACTCCACCCGTCTCTCCTCATCTTCATCTTTTTATGAGCCTTATGAGTCACATTGGTATGACATCGGAGGCAATGGCATCTGTTCTCTTAGGACAAGGAAAAACAGCAAACGAAAGTGAAACAAGAGGAGAATGCTCGACCTCATATGGGAAAAAGCTACATCTCTGCTTCAGGAGGGGTCATTGACGGCATGAATACTAGCCCTTCGATCTCCCTTACTCTTTTTGGCCTTTTTCTCCACATCGGTTTCTTGTGACATTGTTATGGATCACCGGAGTATGCTTTCGGCTTTGTTTTTGGCCTGCTTTTGGGGTGCTTAGGTTTGATGTTCAATGGATTGTTGTTTTGTTTAGTTTTCCCTTTTTTTGTGGGCATCTTGCATCGTCAGTCCATTGGTTTTTCTTTCCTTTTTGTTGCCCCCCTCCCCTATGGACTAAATTGTATATTTTTCTTTCGATTGGATTTCCCTTGGTTCATTTTTATCTCTTTTGGATATTTCATTTGTAATCTGTTTCTTATCCAATAATAATTATAATAATAATAAAAAAGCTGTGTTTGAAAGATCTATGCTTTATACCCTTTTAAGTTTGATTACAACCCTCATTTTGAAGACTGATTGATATTGATGCTGTTATGGATGTGAACAGCCTTACGCTACAAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATGTAAGTTTGCATGTGGTTCCTTTTGGGTTTTGGGTTCTTGTAACACGTGAGGGTTGGAAGAGGGACATGTTATAAGGATTTTAGTATTTTCGTGGCATAGTGAAAAGGCTGGAACAGTGAATATGTATAATATTCAATTACTTGGCTAATGGACTAGTCTCTCTGTTTATTGCCTCATTTGTTTTGCATTTTGACAAGGGTGTTTCTATGGTTTTTAGTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGGTATTCTCTTCGAATCTCTTATTTGCTATCTGTTGGGTGTGTCTTACTTTGTGCTTTATATTATGACGCGATAGAAGCAATTCATGAATTCTTTTTTTTAGGATTTTTCTTTTAGAATATCTTTTAATGGATATTTTTGTCCTTCTGGAGCAGTTTTGTTTGATCTGTACTATAAATGGTGCACAGGGCTATAGGATTATTTTAGTGAACCCGATTTTCTCTGTGCTCAAATAGATGGATGAGTGGAAGCTTTGTCATGGAGTTGTCCCACCTTCCATCATCACTATAATTTTGTTCCTGTTGTAGAGAAGTCTATCAGATGAAAATACGTCCAAGTGCGTGTAGATCATCATGTATAATTTAGGTTGATCAAATATATCTCCGTGTCTAATCTAGAGCTTACATTTTGTTTTCATTGTTCTGCCTGTGTGAGAAATTTAGTTGCACTAACATTTCAATTCTTTTATTTTGCAGCCTTGAGTGAGGCAATTGACATGTAAGTAAATTAAAAGCAACTGGGTTTTGTCAATATTGTTGCTTTATAGTGTGCTTCAATTGACGTAATATCGTCTTGCTTTCGATCAGATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAGAGGGATTAATTGGGGAAGGTTGAAGTTCGAAGTTCCTTTATGAACCTAAATTAAGAGGGGGGTCTTACTGGTAGGTATAACAACACTTTTACCCTCGTAGCAGTATCGTCTAGACAAACATGTATGTATAGTAGCGTGTTGTAACGGCTTGCACTTTGACTTTATTCCGAATTTTACGTATTTGTAACTTGCTTTCATGATTTTTGAATTACGAATCTTGGAGTTGGTATGTGCGGATGGAAAGTGGGGTCCTGAACCAACCATCCTTTATTATTACGAATAATTGAAGCTTCTTGTAAATGTAATGTTTAAGTATGTTCTTTTTCTTTAATGGTTGTTCTTTTATGTCATAGAACTTTTGAAATTGTTAAAAT

mRNA sequence

GTCTATAAATACCACGGCCTCTTTCAATTCCTTCTTCCATTCTTCAATTCGACGAGCGATACGATTGCAACTGCGAACGACAATCCCTCCCAATTCGATCAGCGATCAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAGTGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAGAGGGATTAATTGGGGAAGGTTGAAGTTCGAAGTTCCTTTATGAACCTAAATTAAGAGGGGGGTCTTACTGGTAGGTATAACAACACTTTTACCCTCGTAGCAGTATCGTCTAGACAAACATGTATGTATAGTAGCGTGTTGTAACGGCTTGCACTTTGACTTTATTCCGAATTTTACGTATTTGTAACTTGCTTTCATGATTTTTGAATTACGAATCTTGGAGTTGGTATGTGCGGATGGAAAGTGGGGTCCTGAACCAACCATCCTTTATTATTACGAATAATTGAAGCTTCTTGTAAATGTAATGTTTAAGTATGTTCTTTTTCTTTAATGGTTGTTCTTTTATGTCATAGAACTTTTGAAATTGTTAAAAT

Coding sequence (CDS)

GTCTATAAATACCACGGCCTCTTTCAATTCCTTCTTCCATTCTTCAATTCGACGAGCGATACGATTGCAACTGCGAACGACAATCCCTCCCAATTCGATCAGCGATCAGAAATGGGGAAACGCAAGTCAAGAGCAAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGTCCTTTCTGCAATCATGGGACCAGTGTCGAATGTCGCATTGATATGAAGAACCTGATTGGGGAAGCCTCCTGTAGGATTTGCCAAGAAAGCTTTAGCACGACTATTACAGCCTTGAGTGAGGCAATTGACATATATAGTGAATGGATCGATGAATGTGAGCGGGTCAACACCCTTGAAGATGATGCTGCATAG

Protein sequence

VYKYHGLFQFLLPFFNSTSDTIATANDNPSQFDQRSEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTITALSEAIDIYSEWIDECERVNTLEDDAA

Homology

[Close]

BLAST of ClCG05G009180 vs. Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-41
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQE+FSTT+
Sbjct: 1   MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDD 124
            AL+E IDIYSEWIDECERVN +EDD
Sbjct: 61  NALTEPIDIYSEWIDECERVNNVEDD 86

[Close]

BLAST of ClCG05G009180 vs. Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-39
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDD 124
           TAL+EAIDIYSEWIDECERVNT EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of ClCG05G009180 vs. Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ELF1 PE=1 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.3e-20
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC+IC +SF T I
Sbjct: 1   MGKRKKSTRKPTKRLVQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRI 60

Query: 98  TALSEAIDIYSEWIDECERVNT 120
            +LS+ +D+YS+W D  E VN+
Sbjct: 61  NSLSQPVDVYSDWFDAVEEVNS 82

[Close]

BLAST of ClCG05G009180 vs. Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-20
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 97
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 98  ITALSEAIDIYSEWIDECERVN 119
           IT LSE +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of ClCG05G009180 vs. Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.9e-20
Identity = 44/82 (53.66%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTT 97
           MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1   MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 98  ITALSEAIDIYSEWIDECERVN 119
           IT LSE +D+YS+WID CE  N
Sbjct: 61  ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of ClCG05G009180 vs. TrEMBL
Match: A0A0A0LAG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.0e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDDAA 126
           TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of ClCG05G009180 vs. TrEMBL
Match: W9R774_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDDAA 126
           TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of ClCG05G009180 vs. TrEMBL
Match: F6H1Z3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01870 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-41
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 1


Query: 35  RSEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFS 94
           R +MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFS
Sbjct: 19  RKKMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFS 78

Query: 95  TTITALSEAIDIYSEWIDECERVNTLEDDAA 126
            T+ ALSE ID+YSEWIDECERVNTL++DAA
Sbjct: 79  MTVNALSEPIDVYSEWIDECERVNTLDEDAA 109

[Close]

BLAST of ClCG05G009180 vs. TrEMBL
Match: F6HM52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.8e-41
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMKNLIGEASCRICQESFSTT+
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDD 124
           TAL+E IDIYSEWIDECERVN LEDD
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDD 86

[Close]

BLAST of ClCG05G009180 vs. TrEMBL
Match: A0A118JYE8_CYNCS (Transcription elongation factor 1 OS=Cynara cardunculus var. scolymus GN=Ccrd_000924 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.7e-41
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQE+FSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQENFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDD 124
           TAL+E IDIYSEWIDECERVN L+DD
Sbjct: 61  TALTEPIDIYSEWIDECERVNALDDD 86

[Close]

BLAST of ClCG05G009180 vs. TAIR10
Match: AT5G46030.1 (AT5G46030.1 unknown protein)

HSP 1 Score: 163.7 bits (413), Expect = 7.3e-41
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+CRIC+ESFSTTI
Sbjct: 1   MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDD 124
           TAL+EAIDIYSEWIDECERVNT EDD
Sbjct: 61  TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of ClCG05G009180 vs. NCBI nr
Match: gi|449457009|ref|XP_004146241.1| (PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 1.5e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDDAA 126
           TALSEAIDIYSEWIDECERVN LEDDAA
Sbjct: 61  TALSEAIDIYSEWIDECERVNNLEDDAA 88

[Close]

BLAST of ClCG05G009180 vs. NCBI nr
Match: gi|1009161897|ref|XP_015899142.1| (PREDICTED: transcription elongation factor 1 homolog [Ziziphus jujuba])

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEA CRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDDAA 126
           TAL+EAIDIYSEWIDECERVNTLEDD A
Sbjct: 61  TALTEAIDIYSEWIDECERVNTLEDDGA 88

[Close]

BLAST of ClCG05G009180 vs. NCBI nr
Match: gi|703076897|ref|XP_010090451.1| (hypothetical protein L484_011426 [Morus notabilis])

HSP 1 Score: 179.5 bits (454), Expect = 3.7e-42
Identity = 84/88 (95.45%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDDAA 126
           TAL+E IDIYSEWIDECERVN LEDD A
Sbjct: 61  TALTEPIDIYSEWIDECERVNNLEDDGA 88

[Close]

BLAST of ClCG05G009180 vs. NCBI nr
Match: gi|502142804|ref|XP_004505112.1| (PREDICTED: transcription elongation factor 1 homolog [Cicer arietinum])

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 38  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 97
           MGKRK++ KPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASCRICQESFSTTI
Sbjct: 1   MGKRKAKTKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 98  TALSEAIDIYSEWIDECERVNTLEDDAA 126
           TALSEAIDIYSEWIDECERVNT+EDD A
Sbjct: 61  TALSEAIDIYSEWIDECERVNTVEDDGA 88

[Close]

BLAST of ClCG05G009180 vs. NCBI nr
Match: gi|297740448|emb|CBI30630.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 176.8 bits (447), Expect = 2.4e-41
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 1


Query: 36  SEMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFST 95
           S MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMKNLIGEASCRICQESFST
Sbjct: 32  SYMGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFST 91

Query: 96  TITALSEAIDIYSEWIDECERVNTLEDD 124
           T+TAL+E IDIYSEWIDECERVN LEDD
Sbjct: 92  TVTALTEPIDIYSEWIDECERVNNLEDD 119

The following BLAST results are available for this feature:

BLAST of ClCG05G009180 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELOF1_ORYSJ	2.4e-41	89.53	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os0...	[more]
ELOF1_ARATH	1.3e-39	87.21	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 P...	[more]
ELF1_YEAST	2.3e-20	52.44	Transcription elongation factor 1 OS=Saccharomyces cerevisiae (strain ATCC 20450...	[more]
ELOF1_BOVIN	3.9e-20	53.66	Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1	[more]
ELOF1_HUMAN	3.9e-20	53.66	Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1	[more]

BLAST of ClCG05G009180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAG5_CUCSA	1.0e-43	98.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1	[more]
W9R774_9ROSA	2.6e-42	95.45	Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1	[more]
F6H1Z3_VITVI	2.2e-41	89.01	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g01870 PE=4 SV=...	[more]
F6HM52_VITVI	2.8e-41	94.19	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=...	[more]
A0A118JYE8_CYNCS	3.7e-41	94.19	Transcription elongation factor 1 OS=Cynara cardunculus var. scolymus GN=Ccrd_00...	[more]

BLAST of ClCG05G009180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	7.3e-41	87.21	unknown protein	[more]

BLAST of ClCG05G009180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457009\|ref\|XP_004146241.1\|	1.5e-43	98.86	PREDICTED: transcription elongation factor 1 homolog [Cucumis sativus]	[more]
gi\|1009161897\|ref\|XP_015899142.1\|	1.3e-42	96.59	PREDICTED: transcription elongation factor 1 homolog [Ziziphus jujuba]	[more]
gi\|703076897\|ref\|XP_010090451.1\|	3.7e-42	95.45	hypothetical protein L484_011426 [Morus notabilis]	[more]
gi\|502142804\|ref\|XP_004505112.1\|	1.1e-41	93.18	PREDICTED: transcription elongation factor 1 homolog [Cicer arietinum]	[more]
gi\|297740448\|emb\|CBI30630.3\|	2.4e-41	93.18	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0048096	chromatin-mediated maintenance of transcription
biological_process	GO:0006414	translational elongation
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0008023	transcription elongation factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G009180.1	ClCG05G009180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 39..118 score: 6.6
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 39..115 score: 7.2
None	No IPR available	unknown	SSF57783	Zinc beta-ribbon	coord: 38..118 score: 1.87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G009180	Csa3G236590	Cucumber (Chinese Long) v2	cuwcgB230
ClCG05G009180	MELO3C019389	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G009180	Cla004282	Watermelon (97103) v1	wcgwmB286
ClCG05G009180	Cla97C05G091500	Watermelon (97103) v2	wcgwmbB229
ClCG05G009180	Bhi01G001144	Wax gourd	wcgwgoB427
ClCG05G009180	CSPI03G19550	Wild cucumber (PI 183967)	cpiwcgB237
ClCG05G009180	Cucsa.032410	Cucumber (Gy14) v1	cgywcgB003
ClCG05G009180	CmaCh16G004120	Cucurbita maxima (Rimu)	cmawcgB297
ClCG05G009180	CmaCh04G005580	Cucurbita maxima (Rimu)	cmawcgB659
ClCG05G009180	CmoCh04G005940	Cucurbita moschata (Rifu)	cmowcgB660
ClCG05G009180	CmoCh16G004440	Cucurbita moschata (Rifu)	cmowcgB291
ClCG05G009180	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G009180	Cp4.1LG14g03660	Cucurbita pepo (Zucchini)	cpewcgB208
ClCG05G009180	Cp4.1LG01g01450	Cucurbita pepo (Zucchini)	cpewcgB394
ClCG05G009180	CsGy3G019480	Cucumber (Gy14) v2	cgybwcgB214
ClCG05G009180	MELO3C019389.2	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G009180	Carg11343	Silver-seed gourd	carwcgB0636
ClCG05G009180	Carg13178	Silver-seed gourd	carwcgB0045
ClCG05G009180	CsaV3_3G019610	Cucumber (Chinese Long) v3	cucwcgB238

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None