CmoCh04G005940 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005940
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription elongation factor-like protein
Location	Cmo_Chr04 : 2962686 .. 2966319 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCGAGACGACTACAACTGCGAAAGATAATCCATCCCAATTCGATCAGCAATCAGGTACGACGACTTTGGTCTCTCTTCTCTTAGGGTTCATAGTTCTAGGGTTTTTACTATGCTTTCAATTTGCAGATTATGTGCTCTATTCTTACTTCCTGTCACCTAGGGCTCTATTCTATCTGTGACAAGAATGGGATTTTCCTGAGCTTTTAGTTATTGTTTGCTTTTGATTCTTTCCGTAGTCGATGAACTGATTTTTTTGAGTAATGGAACTTGCATCTTTTATACTGGTTTTATTTTGGTCGTTCATGAGTTGAACACGAATGTTTTGGGATTATAAGGATGGACGGTGAACTTGAGTTCTGATGTACGAGAATTAGTGGCTTATTGAATGATTGATATGTTCGATGATTTAGTGTTTATAACCTTTTAAGTTTCATTGCATCCTCGTTTTGAAGACTGATTAGTAGTGATGTTGTTTATGGATGTGGACAGCCTCACGCCATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCGCATGTATGTTTGCATTTGGTTCATTTTTAGTATCTCGAGGCACAATGAAAAAGCTGGTTATGATATGTATTATCATTAGCTTGTCTCATGGATTAGTCTCTCTGTTTATGTGCCTCATTTGTTTTGTATTGTGATGAGGGTGTTTGTGTGGTTTTAGTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGGTATTCTCTTCAAGCCTCTAATTCTACGAGTGTTCTTGCCTTTTCCCATCTGTTTTGTATGTTTCAATTTATGCTTTATATTATGATGCGATTGAAGCATTTTAGGATTCTTTATGTTTGAATAGTTTGAGTTTGGTCTGAACTCTACCTAGGCTCATGGGAGTATTCTAATGAACCCCATTTTATCTGTCACAAAATAGATGGATTATGGAAGATTTCTTTTGCAGTTGTCCCTTCCATTCACGACTATATTTTCGTTCCTGTGGTAGGGAAGTTTATAAATGCTAGGGGTTGGATTAGTATTTCTGATTGGTTTGGGTTGGGTTGGATTAGTATGTCTGGTTGGGTTGGGTTGGGTTGGATTGGGTTGGATTAGCATGTCTGGTTGGGTTGGATTGGGTTGGGTTGGATTAGTATTTCTGGTTGGGTTGGGTTGGGTTGGGTTATTTTTCCTGAACCCGAATCGGTTTTAGTTTCGGGTTCGTAGGACAAAAATCTTGGGTTGACCTAAACCAAACAAAACTTATATAATACATACGCTAAGAAATCAAGCATATTTGCGGGTTTGGCAGAGTGGCGTACTAGAATTACTCTATGCGCGCAGGTTGGTCAAATTTATTTTTTTATTACTTTATTATTTTTAATTTATTTTATTACTTTACTATTTTTAATTTATTTTTTTATTACTTTACTATTTTTAATATTTTTTATTTAAGATTATTTGAATAATTAAGAAGGGTGGATAAATAAATAAAATTTATTTAAAAAAAAAAAAGAAAAGTTAACAAACTGACAACCCAACCAGAGAATAGAAATTGGGTTGTGAAAATTTTTTAGTTGGGTTGGGTTATCAATCCAACCAAGAACTTTTGGGTTGGGTCAAAAAAAGCCCTCAACCCAACTGGACCATTTACACCCCTAATAAATGCAATGCAGATTCTATGAATAATTATGAATGGCTGATAAATAAATAAAATTTAATTTTTTTTTTTAAAAGTTAACGGACAACCCAACCAGAAAATAGAAGTTGGGTTGTGAAATTTTTTTGGTTGGGTTGGGTTATCAATCCAACCAACCGAACTTCTGGGTTGGGTCAAAAAAAGCACTCAACCCAACCGGGACCATTTACACTCCTAATAAATGCAATGCCTCTAAGTCTAGGTCATTATCTATGATTTAGTTTAACCCATGTCTAATACGGGGCTTACAGATTGTTGTCATTAGTCTGTCTTGGGATAATTAAGCTGCACTAATATTTCTTCTCTCTTATTTTTCAGCCTTAAGCGAGCCAATAGACATGTAAGTAAAAACTAAATGCCGTTGGTTTTTGTCAATATTAATGTTCTATAGTGCTTCGGTTGACATGATGTTCTTTTGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGGTGCTTAGGGGGGGATCAATTGGGACGTTTTCTGTATGAAAAGAAGCTGGCTAGTTCGAAGTTCCTTTGATGAATCTAAATTAAGAGGAGGGGATCTTATTGGTAGGTATGACAACACTCCTACTCTCGTAGCGTGTATGTACAGTAGTATGTTGTGATAGACAAGTGTGTGTACGGTAATATGTTGTGATGTCTTGCATGTTGACTTAATCTTGAATTTTAAGCACCTGTAACTTCGTTTCCTTATTTTGAGTCACGAGTCTTGTGGACACAAATAGTAAATGTCACTGCGAATTTTCGTGGGATCCTGAAACCTCATTTTGTTAATGAAATATTGAAGGGTGTTGTTCTACTTTGTTTTGCTTTGTGTCAATGGTTGTGCTTTCAGCATAGACTCTTTGAAAGTTCTTTAGACATTTTTAATTCTTCTACACTGAATTGCTTGAAAGGATGTTAAGTCCCTTTTATAAACGAAGGCGATGAGATGTACTGTGGTATTGTTAGCCGGGAGGAGAGATTTCTCTCCCATTAGCTAAACAGGGCTTGGAAATGAGATTATATTTTCGGTTTCCAACTCTCCTCCACCCCCACATGCATACATTTACAGGCGTACATAATACATACATTTACCTGCGTCGTTTGGGATCTGGGCTCTTCTACGTCGGTTTTATTTACTTATTATTTTTGTTTTTGTTTCCTTCGATCATTACTTTAAGTCTCATAGGTTTGATCCGGTAGATTCTAACCCATTTTTTCATTGAGTGAAAGGTACGAAATAAATTAGATTGATTTTTCAATCAAAAGTACTATGTGGAATCTTCGTTTTTTTTCTAATTTTTATCGGCAATTCTCTAATTAAATTATGTAGGATCACACAGTTATGAAAACTTTTTCCTTGTTTTTGTTTATATTCTTTTTCTAGTCTCCTTCGGCAATGACTTAGACGACATTACAAGTTATAATATGGATATTGTGAGGAAGATTATTTTATCTTTTTTATTTCGTTGTTTTTTTTTACCACGCAAATAGCACATATTTATACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACTATACACATACATGTAGAAACTCGATCCTCGTAAATTTTAATCTTCGGAACATGGAAGAATTTTAAAAGATGAAAATAGAAATAAGAAATAAGAATGTTTTTTTCGCTCGAAAAATTAATTAATTAATTACTGATGTTTTTACAAAGCAAAAGATATGGGCAATCCTCATATTGATTAATTTTTTTTTTTAACTTTATGGTTAATCTTTTTTTAATAATGTTATGAAGATTCAAAATAA

mRNA sequence

CCCGCGAGACGACTACAACTGCGAAAGATAATCCATCCCAATTCGATCAGCAATCAGCCTCACGCCATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGCCTTAAGCGAGCCAATAGACATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGATTCAAAATAA

Coding sequence (CDS)

ATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGAGTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGCCTTAAGCGAGCCAATAGACATATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGATTCAAAATAA

Homology

[Close]

BLAST of CmoCh04G005940 vs. Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.2e-41
Identity = 78/87 (89.66%), Postives = 82/87 (94.25%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSAAKPPPKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDD 88
           AL+EPIDIYSEWIDECERVNN EDDD
Sbjct: 61 NALTEPIDIYSEWIDECERVNNVEDDD 87

[Close]

BLAST of CmoCh04G005940 vs. Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.8e-36
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FST+I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TAL+E IDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of CmoCh04G005940 vs. Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.4e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTS 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEPIDIYSEWIDECERVN 82
          IT LSEP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of CmoCh04G005940 vs. Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.4e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTS 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEPIDIYSEWIDECERVN 82
          IT LSEP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of CmoCh04G005940 vs. Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 7.4e-21
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMD-KLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTS 60
          MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S + ++D     G  SC +C E F T 
Sbjct: 1  MGRRKSKRKPPPKKKMTGTLETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTP 60

Query: 61 ITALSEPIDIYSEWIDECERVN 82
          IT LSEP+D+YS+WID CE  N
Sbjct: 61 ITYLSEPVDVYSDWIDACEAAN 82

[Close]

BLAST of CmoCh04G005940 vs. TrEMBL
Match: W9R774_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-40
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST+I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TAL+EPIDIYSEWIDECERVNN EDD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDD 86

[Close]

BLAST of CmoCh04G005940 vs. TrEMBL
Match: A0A061F703_THECC (Transcription elongation factor 1 isoform 1 OS=Theobroma cacao GN=TCM_031661 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.9e-40
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMKNLIGEA C ICQE FST+I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEAVCRICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDDS 89
          TAL+EPIDIYSEWIDECERVNN EDDD+
Sbjct: 61 TALTEPIDIYSEWIDECERVNNYEDDDA 88

[Close]

BLAST of CmoCh04G005940 vs. TrEMBL
Match: A0A0A0LAG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.5e-40
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST+I
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TALSE IDIYSEWIDECERVNN EDD
Sbjct: 61 TALSEAIDIYSEWIDECERVNNLEDD 86

[Close]

BLAST of CmoCh04G005940 vs. TrEMBL
Match: F6HM52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.5e-40
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT VECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTGVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TAL+EPIDIYSEWIDECERVNN EDD
Sbjct: 61 TALTEPIDIYSEWIDECERVNNLEDD 86

[Close]

BLAST of CmoCh04G005940 vs. TrEMBL
Match: A0A059C9A0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03207 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-39
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMD+LDTVFSCPFCNHGTSVECR+DMKNLIGEA CGICQE FSTSI
Sbjct: 1  MGKRKSRAKPPPKKRMDRLDTVFSCPFCNHGTSVECRLDMKNLIGEAVCGICQERFSTSI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TAL+EPIDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEPIDIYSEWIDECERVNTVEDD 86

[Close]

BLAST of CmoCh04G005940 vs. TAIR10
Match: AT5G46030.1 (AT5G46030.1 unknown protein)

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-37
Identity = 70/86 (81.40%), Postives = 78/86 (90.70%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SVEC IDMK+LIG+A+C IC+E FST+I
Sbjct: 1  MGKRKSRAKPAPTKRMDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTI 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TAL+E IDIYSEWIDECERVN  EDD
Sbjct: 61 TALTEAIDIYSEWIDECERVNTAEDD 86

[Close]

BLAST of CmoCh04G005940 vs. NCBI nr
Match: gi|747071672|ref|XP_011082718.1| (PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum])

HSP 1 Score: 178.7 bits (452), Expect = 4.4e-42
Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDDS 89
          TAL+EPIDIYSEWIDECERVNNPEDDD+
Sbjct: 61 TALTEPIDIYSEWIDECERVNNPEDDDA 88

[Close]

BLAST of CmoCh04G005940 vs. NCBI nr
Match: gi|747100348|ref|XP_011098262.1| (PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum])

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-41
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTNV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDDDS 89
          TAL+EPIDIY EWIDECERVNNP+DDD+
Sbjct: 61 TALTEPIDIYCEWIDECERVNNPDDDDA 88

[Close]

BLAST of CmoCh04G005940 vs. NCBI nr
Match: gi|1012097418|ref|XP_015956405.1| (PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis])

HSP 1 Score: 175.3 bits (443), Expect = 4.9e-41
Identity = 81/86 (94.19%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRKS AKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKSSAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TALSEPIDIYSEWIDECERVNNPEDD
Sbjct: 61 TALSEPIDIYSEWIDECERVNNPEDD 86

[Close]

BLAST of CmoCh04G005940 vs. NCBI nr
Match: gi|1012097410|ref|XP_015956403.1| (PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranensis])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRK+++KPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 1  MGKRKAKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 60

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TALSEPIDIYSEWIDECERVNNPEDD
Sbjct: 61 TALSEPIDIYSEWIDECERVNNPEDD 86

[Close]

BLAST of CmoCh04G005940 vs. NCBI nr
Match: gi|1012097402|ref|XP_015956401.1| (PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranensis])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 79/86 (91.86%), Postives = 84/86 (97.67%), Query Frame = 1


Query: 1  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCGICQEGFSTSI 60
          MGKRK+++KPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASC ICQE FST++
Sbjct: 13 MGKRKAKSKPPPKKRMDKLDTVFSCPFCNHGTSVECRIDMKNLIGEASCRICQESFSTTV 72

Query: 61 TALSEPIDIYSEWIDECERVNNPEDD 87
          TALSEPIDIYSEWIDECERVNNPEDD
Sbjct: 73 TALSEPIDIYSEWIDECERVNNPEDD 98

The following BLAST results are available for this feature:

BLAST of CmoCh04G005940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ELOF1_ORYSJ	2.2e-41	89.66	Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os0...	[more]
ELOF1_ARATH	2.8e-36	81.40	Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 P...	[more]
ELOF1_BOVIN	7.4e-21	54.88	Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1	[more]
ELOF1_HUMAN	7.4e-21	54.88	Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=3 SV=1	[more]
ELOF1_MOUSE	7.4e-21	54.88	Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1	[more]

BLAST of CmoCh04G005940 vs. TrEMBL


Match Name	E-value	Identity	Description
W9R774_9ROSA	1.7e-40	94.19	Uncharacterized protein OS=Morus notabilis GN=L484_011426 PE=4 SV=1	[more]
A0A061F703_THECC	4.9e-40	90.91	Transcription elongation factor 1 isoform 1 OS=Theobroma cacao GN=TCM_031661 PE=...	[more]
A0A0A0LAG5_CUCSA	6.5e-40	94.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G236590 PE=4 SV=1	[more]
F6HM52_VITVI	6.5e-40	91.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00510 PE=4 SV=...	[more]
A0A059C9A0_EUCGR	1.1e-39	91.86	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03207 PE=4 SV=1	[more]

BLAST of CmoCh04G005940 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G46030.1	1.6e-37	81.40	unknown protein	[more]

BLAST of CmoCh04G005940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|747071672\|ref\|XP_011082718.1\|	4.4e-42	93.18	PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum]	[more]
gi\|747100348\|ref\|XP_011098262.1\|	3.8e-41	90.91	PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum]	[more]
gi\|1012097418\|ref\|XP_015956405.1\|	4.9e-41	94.19	PREDICTED: transcription elongation factor 1 homolog [Arachis duranensis]	[more]
gi\|1012097410\|ref\|XP_015956403.1\|	1.1e-40	91.86	PREDICTED: transcription elongation factor 1 homolog isoform X4 [Arachis duranen...	[more]
gi\|1012097402\|ref\|XP_015956401.1\|	1.1e-40	91.86	PREDICTED: transcription elongation factor 1 homolog isoform X2 [Arachis duranen...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007808	Elf1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0048096	chromatin-mediated maintenance of transcription
biological_process	GO:0006368	transcription elongation from RNA polymerase II promoter
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
cellular_component	GO:0008023	transcription elongation factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0000993	RNA polymerase II core binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005940.1	CmoCh04G005940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007808	Transcription elongation factor 1	PANTHER	PTHR20934	UNCHARACTERIZED	coord: 2..87 score: 3.3
IPR007808	Transcription elongation factor 1	PFAM	PF05129	Elf1	coord: 2..78 score: 1.9
None	No IPR available	unknown	SSF57783	Zinc beta-ribbon	coord: 1..81 score: 4.08

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005940	Cucsa.032410	Cucumber (Gy14) v1	cgycmoB0012
CmoCh04G005940	CmaCh16G004120	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005940	Cla004282	Watermelon (97103) v1	cmowmB699
CmoCh04G005940	Csa3G236590	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005940	MELO3C019389	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005940	ClCG05G009180	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005940	CSPI03G19550	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005940	Lsi05G001270	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005940	Cp4.1LG14g03660	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005940	Cp4.1LG01g01450	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005940	MELO3C019389.2	Melon (DHL92) v3.6.1	cmomedB774
CmoCh04G005940	CsaV3_3G019610	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005940	Cla97C05G091500	Watermelon (97103) v2	cmowmbB735
CmoCh04G005940	Bhi01G001144	Wax gourd	cmowgoB0849
CmoCh04G005940	CsGy3G019480	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005940	Carg11343	Silver-seed gourd	carcmoB0899
CmoCh04G005940	Carg13178	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G005940	CmoCh16G004440	Cucurbita moschata (Rifu)	cmocmoB286

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005940	Cucurbita maxima (Rimu)	cmacmoB728