CmoCh16G004370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G004370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L33
Location	Cmo_Chr16 : 2080975 .. 2082376 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACAATTCGAAGGCATTGTTTGGACTCGGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGGTAACTGCGAACATTTCATCCTAAATCATCATCGCGAATCCATTCTCTTATCGTCACTTCTTATGAAGAATTTGAAAATCACAATCAAAAGATCAGAAAGAATGGGAACTAAGTATCATAATCGAGAATTTTGTTCGGAGGGGTTTATTTATAGTTTTTTCTTACAAGCCAAACAGAGGGCGGGGAAATTTAACATTTGGGGGATCTGTTGAAATTTTCAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCTGTAATTTGCATGGCCAGAAGATATGCTCCTAACAATACGAAGAGAAAGGTATGGTTATTTTAGCTTCGACAGCGTGTGAATCATGGTAGAATTTTGCAAATCGAGAGGCCGGGGATGCGTATCATATGTTTGTGTATTTGTCTATGTTAGGGCTCTAACCATATTTCTTCTTGTGAGATCAATCCATAGATATCGATAGAAAATAAATTCAGTTATAAGAAGTACATGTAAGAGCATGATTGATCAAGTCCTTATCAATTTTGATTAATTTCTATATGAACAAGTGTAATATATGAAATCATCTTCAAACAGAATTGACCCCCTTTATGTTAGTTTGTATGACGTCCTTCAAAAGTCCCGCGTTCTGATTGCTATCACTTCCATATAGTACATGTAATAGCTCAAGCCCACTGCTAGCTGAGTCCTCTTTGGGCTTTCCCTTCAAGAGTTTCAAAATGCGTCTGCTAGAGAGAAGTTTTCACACCCTTACAAAGGTTATTTCGTTCTCCTCTCCGACGTGGGATCTCACAGTATAGAATGTATATTTATCTAATTTGATTTCGTATCTTTGAAACGAGGTGATAGAGAAAATCTGATTAACATTCTGCTGGGATTATTCTACACCGAAGTTTGGATTATTCTACTATAGTGATGCAAAAGTCATTGGGAATAATATTGTGTAATTTGTTCATTATGTTAATTTCACTGATGATTTGATCATGAAATAACTTGTCGATTGCATTCAAATGCAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAAGATTTCAAAATAATCCGACTCTCCTCAACTGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCTTGCAAAACGACATGTTCTGTTCACTGAAGTCAAGTAA

mRNA sequence

ATGGCGGCAACAATTCGAAGGCATTGTTTGGACTCGGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCTGTAATTTGCATGGCCAGAAGATATGCTCCTAACAATACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAAGATTTCAAAATAATCCGACTCTCCTCAACTGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCTTGCAAAACGACATGTTCTGTTCACTGAAGTCAAGTAA

Coding sequence (CDS)

ATGGCGGCAACAATTCGAAGGCATTGTTTGGACTCGGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCTGTAATTTGCATGGCCAGAAGATATGCTCCTAACAATACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAAGAAGACAAGGAGGAAAGGGGGAAGGAAAGATTTCAAAATAATCCGACTCTCCTCAACTGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCTTGCAAAACGACATGTTCTGTTCACTGAAGTCAAGTAA

Homology

[Close]

BLAST of CmoCh16G004370 vs. Swiss-Prot
Match: RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 SV=2)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 23/46 (50.00%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK 159
           +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CmoCh16G004370 vs. Swiss-Prot
Match: RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 23/46 (50.00%), Postives = 40/46 (86.96%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK 159
           +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CmoCh16G004370 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEVK 159
           +I+L STAGTGFFY AKK  RK  +K+E +K+DP+ ++HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of CmoCh16G004370 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.8e-07
Identity = 25/46 (54.35%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK 159
           +I+L S+A TGFFY KKK+ RK  +K+E +K+DP+A++HV+F E K
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of CmoCh16G004370 vs. Swiss-Prot
Match: RL33_PSEHT (50S ribosomal protein L33 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.2e-07
Identity = 27/45 (60.00%), Postives = 34/45 (75.56%), Query Frame = 1


Query: 115 IRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEVK 159
           IRL STAGTGFFY   K+ R M +K+E++KFDP  ++HVLF E K
Sbjct: 5   IRLVSTAGTGFFYTTDKNKRNMPEKMEIKKFDPKIRKHVLFKEAK 49

[Close]

BLAST of CmoCh16G004370 vs. TrEMBL
Match: A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-50
Identity = 119/173 (68.79%), Postives = 135/173 (78.03%), Query Frame = 1


Query: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVK--- 60
           M  TI+R CLD  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+K   
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  ------ES----LSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRR 120
                 ES    LSQ A ERSIR+ SVICMA+RYAP  TKRKRLSRKRGGDP KKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 159
           KGG KDFKI+RLSSTA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CmoCh16G004370 vs. TrEMBL
Match: A0A061F8Q7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.5e-19
Identity = 75/170 (44.12%), Postives = 100/170 (58.82%), Query Frame = 1


Query: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQ 60
           MA +      D A +C  RN  L ++  S        +  SF+A LS S     K  LS 
Sbjct: 1   MATSAISSLFDLAYACQPRNLQL-NNFPSCHLKLAPSRSPSFTANLSHSFFS--KGCLSM 60

Query: 61  SARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGG------------ 120
           +  +RS  H +V+ MARRYA N++ RK+LSRK+GGD  KK K RRK              
Sbjct: 61  TTFQRSY-HYTVVGMARRYASNSSLRKKLSRKKGGDRGKKNKRRRKRTNKRKGREGKKKK 120

Query: 121 RKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 159
           RK+FK++RL S AGTG FYAKKKSR++ +K++ +K+DP  K+HVLF EVK
Sbjct: 121 RKEFKVVRLVSAAGTGVFYAKKKSRQIKEKLKFRKYDPQVKQHVLFEEVK 166

[Close]

BLAST of CmoCh16G004370 vs. TrEMBL
Match: A0A059BNX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 59/121 (48.76%), Postives = 79/121 (65.29%), Query Frame = 1


Query: 38  KCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDP 97
           K L FS  L  S       SLS    ++   H S++CM+ RYAP++T RK+ +RKRGGDP
Sbjct: 30  KSLCFSRNLLPSTFSPGCISLSARDAKKPPCH-SLVCMSYRYAPDSTLRKKKARKRGGDP 89

Query: 98  EKKKKTRRKGGR--KDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFT 157
            KK+K RRK  R  K  K+I L STAGTGF YAK +S +  DK++ +K+DP+ ++HVLF 
Sbjct: 90  GKKRKARRKSKRSKKSVKVINLLSTAGTGFSYAKTRSVQSKDKLKCRKYDPVLRQHVLFQ 149

[Close]

BLAST of CmoCh16G004370 vs. TrEMBL
Match: U5GTB0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-11
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1


Query: 90  SRKRGGDPEKKKKTRRKGGRKD---FKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDP 149
           SR++GGD EKKKK RRK  RK+   FKIIRL S AGTG+ YAK+K  K ++K+E++K+DP
Sbjct: 3   SRRKGGDREKKKKRRRKAARKNKDSFKIIRLVSAAGTGYVYAKRKG-KRSEKLEIKKYDP 62

Query: 150 LAKRHVLFTEVK 159
           + K HV F E K
Sbjct: 63  VVKHHVFFKESK 73

[Close]

BLAST of CmoCh16G004370 vs. TrEMBL
Match: A0A0B2RXC0_GLYSO (50S ribosomal protein L33 OS=Glycine soja GN=glysoja_001580 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-08
Identity = 35/59 (59.32%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 100 KKKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 159
           ++K  R   ++  KIIR+ STAGTGFFYA +KSRKM DK+EL+K+DP  KRHV+F E K
Sbjct: 25  QRKASRSSSKEKNKIIRVVSTAGTGFFYAMRKSRKM-DKLELKKYDPKVKRHVVFRESK 82

[Close]

BLAST of CmoCh16G004370 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 109 RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK 159
           +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of CmoCh16G004370 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 109 RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTEVK 159
           +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of CmoCh16G004370 vs. NCBI nr
Match: gi|659112008|ref|XP_008456021.1| (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 224.2 bits (570), Expect = 1.6e-55
Identity = 121/160 (75.62%), Postives = 136/160 (85.00%), Query Frame = 1


Query: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALS--LSVVPNVKESL 60
           MA TI+R CLD  LSCG+RN+FL +S+SS P +F++F   SF A LS  LS VPNVK  L
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLS 120
            Q A ERSIR+GSVICMA+RYAP+ TKRKRLSRKRGGDP KKKKTRRKGGRKDFKI+RLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 159
           STA TGFFYAKKKSRKMADKIE+QK+DP+A RHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CmoCh16G004370 vs. NCBI nr
Match: gi|778680352|ref|XP_011651295.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 5.8e-53
Identity = 117/160 (73.12%), Postives = 133/160 (83.12%), Query Frame = 1


Query: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVKESL 60
           M  TI+R CLD  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+K  L
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60

Query: 61  SQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKDFKIIRLS 120
           SQ A ERSIR+ SVICMA+RYAP  TKRKRLSRKRGGDP KKKKTRRKGG KDFKI+RLS
Sbjct: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120

Query: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 159
           STA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CmoCh16G004370 vs. NCBI nr
Match: gi|778680349|ref|XP_011651294.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 2.1e-50
Identity = 119/173 (68.79%), Postives = 135/173 (78.03%), Query Frame = 1


Query: 1   MAATIRRHCLDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVK--- 60
           M  TI+R CLD  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+K   
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  ------ES----LSQSARERSIRHGSVICMARRYAPNNTKRKRLSRKRGGDPEKKKKTRR 120
                 ES    LSQ A ERSIR+ SVICMA+RYAP  TKRKRLSRKRGGDP KKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 159
           KGG KDFKI+RLSSTA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CmoCh16G004370 vs. NCBI nr
Match: gi|1021556407|ref|XP_016169566.1| (PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis])

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 81/146 (55.48%), Postives = 94/146 (64.38%), Query Frame = 1


Query: 14  LSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVI 73
           LSC +RNRF                 L FS+  SLS     +  LS     R   H  +I
Sbjct: 18  LSCYKRNRF-------------HLHHLHFSST-SLSHAVFSRGYLSTEMFTRPKVH-PII 77

Query: 74  CMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKD-FKIIRLSSTAGTGFFYAKKKS 133
           CMA+RYAPN TKRKRLSRKRGGDP+KK+  RRKG +K  FKIIRL S AGTGFFYAKKKS
Sbjct: 78  CMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVSAAGTGFFYAKKKS 137

Query: 134 RKMADKIELQKFDPLAKRHVLFTEVK 159
           R++  KI+L+K+DP  K HVLFTE K
Sbjct: 138 RRI-HKIDLKKYDPKVKLHVLFTEAK 147

[Close]

BLAST of CmoCh16G004370 vs. NCBI nr
Match: gi|1012224651|ref|XP_015936678.1| (PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis])

HSP 1 Score: 117.5 bits (293), Expect = 2.2e-23
Identity = 81/146 (55.48%), Postives = 94/146 (64.38%), Query Frame = 1


Query: 14  LSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKESLSQSARERSIRHGSVI 73
           LSC +RNRF                 L FS+  SLS     +  LS     R   H  +I
Sbjct: 18  LSCYKRNRF-------------HLHHLRFSST-SLSHAVFSRGYLSTEMFTRPKVH-PII 77

Query: 74  CMARRYAPNNTKRKRLSRKRGGDPEKKKKTRRKGGRKD-FKIIRLSSTAGTGFFYAKKKS 133
           CMA+RYAPN TKRKRLSRKRGGDP+KK+  RRKG +K  FKIIRL S AGTGFFYAKKKS
Sbjct: 78  CMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVSAAGTGFFYAKKKS 137

Query: 134 RKMADKIELQKFDPLAKRHVLFTEVK 159
           R++  KI+L+K+DP  K HVLFTE K
Sbjct: 138 RRI-HKIDLKKYDPKVKLHVLFTEAK 147

The following BLAST results are available for this feature:

BLAST of CmoCh16G004370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_EHRRG	2.2e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 ...	[more]
RL33_EHRRW	2.2e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG ...	[more]
RL33_MAGSA	3.7e-07	56.52	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
RL33_RHOCS	4.8e-07	54.35	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_PSEHT	8.2e-07	60.00	50S ribosomal protein L33 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=...	[more]

BLAST of CmoCh16G004370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF8_CUCSA	1.4e-50	68.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1	[more]
A0A061F8Q7_THECC	8.5e-19	44.12	Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1	[more]
A0A059BNX9_EUCGR	1.2e-15	48.76	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1	[more]
U5GTB0_POPTR	6.6e-11	58.33	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g P...	[more]
A0A0B2RXC0_GLYSO	5.2e-08	59.32	50S ribosomal protein L33 OS=Glycine soja GN=glysoja_001580 PE=4 SV=1	[more]

BLAST of CmoCh16G004370 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.1e-09	58.82	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.1e-09	58.82	Ribosomal protein L33 family protein	[more]

BLAST of CmoCh16G004370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112008\|ref\|XP_008456021.1\|	1.6e-55	75.63	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
gi\|778680352\|ref\|XP_011651295.1\|	5.8e-53	73.13	PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus]	[more]
gi\|778680349\|ref\|XP_011651294.1\|	2.1e-50	68.79	PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus]	[more]
gi\|1021556407\|ref\|XP_016169566.1\|	2.2e-23	55.48	PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis]	[more]
gi\|1012224651\|ref\|XP_015936678.1\|	2.2e-23	55.48	PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001705	Ribosomal_L33
IPR011332	Ribosomal_zn-bd
IPR018264	Ribosomal_L33_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G004370.1	CmoCh16G004370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 114..158 score: 3.
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 109..158 score: 2.0
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 113..158 score: 7.32
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 127..145 scor
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 114..158 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G004370	CmaCh16G004030	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G004370	Cla004291	Watermelon (97103) v1	cmowmB311
CmoCh16G004370	Csa3G234020	Cucumber (Chinese Long) v2	cmocuB307
CmoCh16G004370	MELO3C019403	Melon (DHL92) v3.5.1	cmomeB290
CmoCh16G004370	ClCG05G009260	Watermelon (Charleston Gray)	cmowcgB291
CmoCh16G004370	CSPI03G19460	Wild cucumber (PI 183967)	cmocpiB315
CmoCh16G004370	Lsi05G001360	Bottle gourd (USVL1VR-Ls)	cmolsiB304
CmoCh16G004370	Cp4.1LG14g03720	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G004370	MELO3C019403.2	Melon (DHL92) v3.6.1	cmomedB332
CmoCh16G004370	CsaV3_3G019510	Cucumber (Chinese Long) v3	cmocucB0370
CmoCh16G004370	Cla97C05G091590	Watermelon (97103) v2	cmowmbB332
CmoCh16G004370	Bhi01G001155	Wax gourd	cmowgoB0434
CmoCh16G004370	CsGy3G019400	Cucumber (Gy14) v2	cgybcmoB301
CmoCh16G004370	Carg11336	Silver-seed gourd	carcmoB0898

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G004370	Cucurbita pepo (Zucchini)	cmocpeB311
CmoCh16G004370	Bottle gourd (USVL1VR-Ls)	cmolsiB299
CmoCh16G004370	Cucumber (Gy14) v2	cgybcmoB470
CmoCh16G004370	Silver-seed gourd	carcmoB0055
CmoCh16G004370	Cucumber (Chinese Long) v3	cmocucB0393
CmoCh16G004370	Wax gourd	cmowgoB0448
CmoCh16G004370	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh16G004370	Cucumber (Gy14) v1	cgycmoB0006
CmoCh16G004370	Cucurbita maxima (Rimu)	cmacmoB701