Csa3G234020 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa3G234020
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	50S ribosomal protein L33; contains IPR001705 (Ribosomal protein L33), IPR011332 (Ribosomal protein, zinc-binding domain)
Location	Chr3 : 15154779 .. 15155952 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGTTCCTTTTCATGGAAGAAGATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGTATTTCCCAACACGAGAAAGATCGGGAATCAAGAATGAGTGAGTATCATAATCGAGAATCTCTGTGGGGGAGAATTCTTTTGGTGGGGTTTGTTTAAAGTGTATTTTTTCTCCTAACAAACCAAACAGAATCCGGACAAATTTAACATTCGGCGGTCTGTTGGAATTTTCAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGGTATGACAATTGTTTCTTTTGGATTGATTGGTTCTTTATCTCGACTATGTGTGGATTATCATCGTAATTTGCTAATCAAGAGAAGAGTGATGGATGGTATATGTTTTCGTATGTGTCTGTACATGTTTACCCCATTTATGCTAACCTATATGATATCCTTCAAAATTCCCGCATTCTGACTGGTATCAGTTCCGTATGGTATACAAAACATATACTTATCTGATTGAGATTGTATCTTTGAAATGAGATGATGGTGAAAATCTGATACATCTTCTGTTGGGATTATTCTACATGGAAGTTTGGTACATTTTCTGTTTTAATTTTAATTTTTACAACAATACAAAAGTCATTGGGAATAATGTTTGTGTAATTTTTTCGTTATGTTAATGTGATTGTTGATTTGATCATGTAACTAATTTCGATTGCATTCAAATGCAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGAGTCAGATTGTTCTTTGTGATGGATATATACAAAAGATAGACAGATAGCTGGATGGA

mRNA sequence

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGTATTTCCCAACACGAGAAAGATCGGGAATCAAGAATGAGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Coding sequence (CDS)

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGTATTTCCCAACACGAGAAAGATCGGGAATCAAGAATGAGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Protein sequence

MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGISQHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK*

Homology

[Close]

BLAST of Csa3G234020 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-07
Identity = 25/46 (54.35%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 129 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 174
           +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A +HV+F E K
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of Csa3G234020 vs. Swiss-Prot
Match: RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-07
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 129 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 174
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Csa3G234020 vs. Swiss-Prot
Match: RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.9e-07
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 129 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 174
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Csa3G234020 vs. Swiss-Prot
Match: RL33_EHRCJ (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 9.1e-07
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 129 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 174
           +V+L+S+A+TGFFY KK++ +K+ +K+  +KYDP+  +HVLF+E K
Sbjct: 9   LVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]

BLAST of Csa3G234020 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.2e-06
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1


Query: 129 IVRLSSTARTGFFY-AKKKSRKVADKIEVQKYDPIANRHVLFTEVK 174
           +++L STA TGFFY AKK  RK  +K+E +KYDP+  +HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of Csa3G234020 vs. TrEMBL
Match: A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.4e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
           QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 174
           KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of Csa3G234020 vs. TrEMBL
Match: A0A061F8Q7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.1e-19
Identity = 74/185 (40.00%), Postives = 97/185 (52.43%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60
           M T+      DL  +C  RN  L++  S          SPSF+A LS +       KG  
Sbjct: 1   MATSAISSLFDLAYACQPRNLQLNNFPSCH-LKLAPSRSPSFTANLSHSFFS----KGC- 60

Query: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
                       LS    +RS  Y +V+ MA+RYA  ++ RK+LSRK+GGD  KK K RR
Sbjct: 61  ------------LSMTTFQRSYHY-TVVGMARRYASNSSLRKKLSRKKGGDRGKKNKRRR 120

Query: 121 KGGGK------------DFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVL 174
           K   K            +FK+VRL S A TG FYAKKKSR++ +K++ +KYDP   +HVL
Sbjct: 121 KRTNKRKGREGKKKKRKEFKVVRLVSAAGTGVFYAKKKSRQIKEKLKFRKYDPQVKQHVL 166

[Close]

BLAST of Csa3G234020 vs. TrEMBL
Match: A0A059BNX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.1e-18
Identity = 47/88 (53.41%), Postives = 64/88 (72.73%), Query Frame = 1


Query: 86  SVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKG--GGKDFKIVRLSSTARTGFFYA 145
           S++CM+ RYAP++T RK+ +RKRGGDP KK+K RRK     K  K++ L STA TGF YA
Sbjct: 62  SLVCMSYRYAPDSTLRKKKARKRGGDPGKKRKARRKSKRSKKSVKVINLLSTAGTGFSYA 121

Query: 146 KKKSRKVADKIEVQKYDPIANRHVLFTE 172
           K +S +  DK++ +KYDP+  +HVLF E
Sbjct: 122 KTRSVQSKDKLKCRKYDPVLRQHVLFQE 149

[Close]

BLAST of Csa3G234020 vs. TrEMBL
Match: U5GTB0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.4e-11
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 105 SRKRGGDPAKKKKTRRKGGGKD---FKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDP 164
           SR++GGD  KKKK RRK   K+   FKI+RL S A TG+ YAK+K ++ ++K+E++KYDP
Sbjct: 3   SRRKGGDREKKKKRRRKAARKNKDSFKIIRLVSAAGTGYVYAKRKGKR-SEKLEIKKYDP 62

Query: 165 IANRHVLFTEVK 174
           +   HV F E K
Sbjct: 63  VVKHHVFFKESK 73

[Close]

BLAST of Csa3G234020 vs. TrEMBL
Match: A0A0D2UUS5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256900 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 114 KKKKTRRKGGGKDFKIVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEV 173
           KKKKT        F  +RL S A TGFFY K+KS +KVA+K+E +KYDP  NRHVLFTE 
Sbjct: 4   KKKKT--------FMFIRLVSAAGTGFFYVKRKSAKKVAEKLEFRKYDPRVNRHVLFTEQ 56

[Close]

BLAST of Csa3G234020 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 125 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 174
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of Csa3G234020 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 125 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 174
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of Csa3G234020 vs. NCBI nr
Match: gi|778680349|ref|XP_011651294.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 3.5e-91
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
           QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 174
           KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of Csa3G234020 vs. NCBI nr
Match: gi|778680352|ref|XP_011651295.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 9.5e-81
Identity = 160/173 (92.49%), Postives = 160/173 (92.49%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG-- 60

Query: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
                      LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  -----------LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 174
           KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of Csa3G234020 vs. NCBI nr
Match: gi|659112008|ref|XP_008456021.1| (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.8e-72
Identity = 146/173 (84.39%), Postives = 152/173 (87.86%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KG  
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKG-- 60

Query: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
                      LL QRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  -----------LLPQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 174
           KGG KDFKIVRLSSTARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGRKDFKIVRLSSTARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of Csa3G234020 vs. NCBI nr
Match: gi|1021556407|ref|XP_016169566.1| (PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis])

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-24
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 87  VICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKD-FKIVRLSSTARTGFFYAKK 146
           +ICMAKRYAP TTKRKRLSRKRGGDP KK+  RRKG  K  FKI+RL S A TGFFYAKK
Sbjct: 61  IICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVSAAGTGFFYAKK 120

Query: 147 KSRKVADKIEVQKYDPIANRHVLFTEVK 174
           KSR++  KI+++KYDP    HVLFTE K
Sbjct: 121 KSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

[Close]

BLAST of Csa3G234020 vs. NCBI nr
Match: gi|1012224651|ref|XP_015936678.1| (PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis])

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-24
Identity = 62/88 (70.45%), Postives = 70/88 (79.55%), Query Frame = 1


Query: 87  VICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKD-FKIVRLSSTARTGFFYAKK 146
           +ICMAKRYAP TTKRKRLSRKRGGDP KK+  RRKG  K  FKI+RL S A TGFFYAKK
Sbjct: 61  IICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVSAAGTGFFYAKK 120

Query: 147 KSRKVADKIEVQKYDPIANRHVLFTEVK 174
           KSR++  KI+++KYDP    HVLFTE K
Sbjct: 121 KSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

The following BLAST results are available for this feature:

BLAST of Csa3G234020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_RHOCS	2.4e-07	54.35	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_EHRRW	6.9e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG ...	[more]
RL33_EHRRG	6.9e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 ...	[more]
RL33_EHRCJ	9.1e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2	[more]
RL33_MAGSA	1.2e-06	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]

BLAST of Csa3G234020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF8_CUCSA	2.4e-91	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1	[more]
A0A061F8Q7_THECC	1.1e-19	40.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1	[more]
A0A059BNX9_EUCGR	6.1e-18	53.41	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1	[more]
U5GTB0_POPTR	9.4e-11	51.39	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g P...	[more]
A0A0D2UUS5_GOSRA	7.5e-08	59.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256900 PE=3 SV=1	[more]

BLAST of Csa3G234020 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.2e-09	60.00	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.2e-09	60.00	Ribosomal protein L33 family protein	[more]

BLAST of Csa3G234020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680349\|ref\|XP_011651294.1\|	3.5e-91	100.00	PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus]	[more]
gi\|778680352\|ref\|XP_011651295.1\|	9.5e-81	92.49	PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus]	[more]
gi\|659112008\|ref\|XP_008456021.1\|	2.8e-72	84.39	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
gi\|1021556407\|ref\|XP_016169566.1\|	2.8e-24	70.45	PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis]	[more]
gi\|1012224651\|ref\|XP_015936678.1\|	2.8e-24	70.45	PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001705	Ribosomal_L33
IPR011332	Ribosomal_zn-bd
IPR018264	Ribosomal_L33_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU108561	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa3G234020.1	Csa3G234020.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU108561	CU108561	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 129..173 score: 2.
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 124..173 score: 5.4
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 128..173 score: 8.55
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 142..160 scor
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 129..173 score: 1.6
None	No IPR available	PANTHER	PTHR15238:SF1	39S RIBOSOMAL PROTEIN L33, MITOCHONDRIAL	coord: 129..173 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa3G234020	Cla004291	Watermelon (97103) v1	cuwmB243
Csa3G234020	MELO3C019403	Melon (DHL92) v3.5.1	cumeB166
Csa3G234020	ClCG05G009260	Watermelon (Charleston Gray)	cuwcgB230
Csa3G234020	Lsi05G001360	Bottle gourd (USVL1VR-Ls)	culsiB211
Csa3G234020	MELO3C019403.2	Melon (DHL92) v3.6.1	cumedB238
Csa3G234020	Cla97C05G091590	Watermelon (97103) v2	cuwmbB215
Csa3G234020	Bhi01G001155	Wax gourd	cuwgoB283
Csa3G234020	CSPI03G19460	Wild cucumber (PI 183967)	cpicuB120
Csa3G234020	CmoCh16G004370	Cucurbita moschata (Rifu)	cmocuB307
Csa3G234020	CsGy3G019400	Cucumber (Gy14) v2	cgybcuB109
Csa3G234020	Carg11336	Silver-seed gourd	carcuB0675

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa3G234020	Cucumber (Gy14) v1	cgycuB003
Csa3G234020	Cucurbita maxima (Rimu)	cmacuB320
Csa3G234020	Cucurbita maxima (Rimu)	cmacuB697
Csa3G234020	Cucurbita moschata (Rifu)	cmocuB687
Csa3G234020	Cucurbita pepo (Zucchini)	cpecuB205
Csa3G234020	Cucurbita pepo (Zucchini)	cpecuB389
Csa3G234020	Silver-seed gourd	carcuB0043