Lsi05G001360 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	50S ribosomal protein L33
Location	chr05 : 2034082 .. 2035309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCGACAACAATTCAAAGGTTTTGTTTGGATTTGGCGCTTTCTTGTGGAAAAAGGAATCGATTTCTCAGTGATTCTCCGTCTTCAGCTCCTTCAAACTTCGTCACTTTCAACTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCGTCGTTCCCAATGTCAAAGGTAATTGCGAACATTTCATCCAAAATCATCATCACAACTCCATTCATCATATCTCTCTTTAACCTTTCTTTGTTTTATATATATATATATATGAAAATCACAATCAAAAGACAAGAAATAACGGGAATCAAGAGTGAGTATCATAATCGAGGATCTCTGCTGGAGAGAATTTTGTTTGGTGGGGTTTGTTTAAAGTTTTTTTTTTTCTAACGAACCAAACAGAAGCCGGAGAAATTTAACATTTGGAGGTCTGTTGAAAATTTCAGGATCGTTGTCGCAGAGGGCTCTGGAGAGATCAATTCGTTATGGATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGACACTACAAAGAGAAAGGTACAAAAGTTTTATTAGTTAGTCGTTTCTATTGGATTGATTGGATCTATATCTTGTTTTAGCTTCGACTGTGTGTGAATTATGATAGAAATTTGCAAATCGAGAGGACAGTGATGGATATTATATGTTTGTGTATGTGTCTGTGTTTACCCCTTTTATGTTAGCCTGTATGATATCCTTCAAAATTCCCACATTCTGATTTCTGCCTGGTATCAGTTCCATATGGTATAGAAAACATATATTTATCTGAACATATATTTATCTGATTGAGTTTGTATCTTTGAAATGAGATGATGGCGAAAATCTGATAAATCTTCTGTTGGGATTATTCTGCATTGAAGTTTGGTACATTTTCTGTTCCAACTTTAGTTTTTACAATAATACAAAAATCATTGGGAATAATATTGTGTAATTTGTTCGTTATGTTAGTGTGACTGTTGATTTGATCATGTAACTAACTTGTCAATTGCATTCAAATGCAGAGGTTGAGTAGGAAGAGAGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGGAAAGGAGGAAAGAAAGATTTCAAAATAGTCCGACTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTCACTGAAGTCAAGTGA

mRNA sequence

ATGATGGCGACAACAATTCAAAGGTTTTGTTTGGATTTGGCGCTTTCTTGTGGAAAAAGGAATCGATTTCTCAGTGATTCTCCGTCTTCAGCTCCTTCAAACTTCGTCACTTTCAACTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCGTCGTTCCCAATGTCAAAGGATCGTTGTCGCAGAGGGCTCTGGAGAGATCAATTCGTTATGGATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGAGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGGAAAGGAGGAAAGAAAGATTTCAAAATAGTCCGACTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTCACTGAAGTCAAGTGA

Coding sequence (CDS)

ATGATGGCGACAACAATTCAAAGGTTTTGTTTGGATTTGGCGCTTTCTTGTGGAAAAAGGAATCGATTTCTCAGTGATTCTCCGTCTTCAGCTCCTTCAAACTTCGTCACTTTCAACTCTCTCTCCTTCTCTGCTTCCCTCTCGCTGAGCGTCGTTCCCAATGTCAAAGGATCGTTGTCGCAGAGGGCTCTGGAGAGATCAATTCGTTATGGATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGACACTACAAAGAGAAAGAGGTTGAGTAGGAAGAGAGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGGAAAGGAGGAAAGAAAGATTTCAAAATAGTCCGACTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTCACTGAAGTCAAGTGA

Protein sequence

MMATTIQRFCLDLALSCGKRNRFLSDSPSSAPSNFVTFNSLSFSASLSLSVVPNVKGSLSQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRRKGGKKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK

Homology

[Close]

BLAST of Lsi05G001360 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-07
Identity = 26/51 (50.98%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 110 KKDFKIVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           K++  +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A +HV+F E K
Sbjct: 3   KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of Lsi05G001360 vs. Swiss-Prot
Match: RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 115 IVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Lsi05G001360 vs. Swiss-Prot
Match: RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 115 IVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of Lsi05G001360 vs. Swiss-Prot
Match: RL33_EHRCJ (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.3e-07
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 115 IVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           +V+L+S+A+TGFFY KK++ +K+ +K+  +KYDP+  +HVLF+E K
Sbjct: 9   LVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]

BLAST of Lsi05G001360 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1


Query: 115 IVRLSSTARTGFFY-AKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           +++L STA TGFFY AKK  RK  +K+E +KYDP+  +HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of Lsi05G001360 vs. TrEMBL
Match: A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 7.4e-63
Identity = 138/173 (79.77%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSDSPSSAPSNFVTFNSLSFSASLSLSV--VPNVKGS- 61
           M TTIQRFCLDL LSCG RN FLSDS SS PSNF+TFNS SFSA+LSL++  +PN+KG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 62  ------------LSQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRR 121
                       LSQRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDP KKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 122 KGGKKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           KGG KDFKIVRLSSTARTGFFYAKKKSRK+ADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of Lsi05G001360 vs. TrEMBL
Match: A0A061F8Q7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-21
Identity = 80/174 (45.98%), Postives = 105/174 (60.34%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSDSPSS----APSNFVTFNSLSFSASLSLSVVPNVKG 61
           MAT+      DLA +C  RN  L++ PS     APS      S SF+A+LS S     KG
Sbjct: 1   MATSAISSLFDLAYACQPRNLQLNNFPSCHLKLAPSR-----SPSFTANLSHSFFS--KG 60

Query: 62  SLSQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRRKGG-------- 121
            LS    +RS  Y +V+ MA+RYA +++ RK+LSRK+GGD  KK K RRK          
Sbjct: 61  CLSMTTFQRSYHY-TVVGMARRYASNSSLRKKLSRKKGGDRGKKNKRRRKRTNKRKGREG 120

Query: 122 ----KKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
               +K+FK+VRL S A TG FYAKKKSR++ +K++ +KYDP   +HVLF EVK
Sbjct: 121 KKKKRKEFKVVRLVSAAGTGVFYAKKKSRQIKEKLKFRKYDPQVKQHVLFEEVK 166

[Close]

BLAST of Lsi05G001360 vs. TrEMBL
Match: A0A059BNX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-16
Identity = 64/139 (46.04%), Postives = 86/139 (61.87%), Query Frame = 1


Query: 21  NRFLSDSPSSAPSNFVTFNSLSFSASLSLSVVPNVKGSLSQRALERSIRYGSVICMAKRY 80
           +R   + P  APS      SL FS +L  S       SLS R  ++   + S++CM+ RY
Sbjct: 16  SRISGNRPLLAPSP----KSLCFSRNLLPSTFSPGCISLSARDAKKPPCH-SLVCMSYRY 75

Query: 81  APDTTKRKRLSRKRGGDPDKKKKTRRKG--GKKDFKIVRLSSTARTGFFYAKKKSRKMAD 140
           APD+T RK+ +RKRGGDP KK+K RRK    KK  K++ L STA TGF YAK +S +  D
Sbjct: 76  APDSTLRKKKARKRGGDPGKKRKARRKSKRSKKSVKVINLLSTAGTGFSYAKTRSVQSKD 135

Query: 141 KIELQKYDPIANRHVLFTE 158
           K++ +KYDP+  +HVLF E
Sbjct: 136 KLKCRKYDPVLRQHVLFQE 149

[Close]

BLAST of Lsi05G001360 vs. TrEMBL
Match: U5GTB0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.8e-09
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 91  SRKRGGDPDKKKKTRRKGGKKD---FKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDP 150
           SR++GGD +KKKK RRK  +K+   FKI+RL S A TG+ YAK+K  K ++K+E++KYDP
Sbjct: 3   SRRKGGDREKKKKRRRKAARKNKDSFKIIRLVSAAGTGYVYAKRKG-KRSEKLEIKKYDP 62

Query: 151 IANRHVLFTEVK 160
           +   HV F E K
Sbjct: 63  VVKHHVFFKESK 73

[Close]

BLAST of Lsi05G001360 vs. TrEMBL
Match: V7AGZ5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G128100g PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-09
Identity = 61/163 (37.42%), Postives = 76/163 (46.63%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRF--LSDSPSSA---PSNFVTFNSLSFSASLSLSVVPNVK 61
           MA+        L +SCGK N F   + SPSS+    SNF  FNS S +   S       +
Sbjct: 1   MASATTHVFSGLTVSCGKGNSFFNFNHSPSSSTLLSSNFRPFNSFSTNGLFS-------R 60

Query: 62  GSLSQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRRKGGKKDFKIV 121
             LS+    R  R   V+CMA                              G KK  K++
Sbjct: 61  DYLSKDMFCRPTR-SPVVCMA------------------------------GSKKKSKVI 120

Query: 122 RLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           RL STA TGFFYA KKS+K  +K+EL+KYDP   RHV+F E K
Sbjct: 121 RLVSTAGTGFFYAIKKSKK-NEKLELKKYDPKVKRHVVFKESK 124

[Close]

BLAST of Lsi05G001360 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-10
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 110 KKDFKIVRLSSTARTGFFYAKKKSRK-MADKIELQKYDPIANRHVLFTEVK 160
           KK F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of Lsi05G001360 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 61.6 bits (148), Expect = 5.0e-10
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 110 KKDFKIVRLSSTARTGFFYAKKKSRK-MADKIELQKYDPIANRHVLFTEVK 160
           KK F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of Lsi05G001360 vs. NCBI nr
Match: gi|659112008|ref|XP_008456021.1| (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 5.8e-69
Identity = 144/160 (90.00%), Postives = 150/160 (93.75%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSDSPSSAPSNFVTFNSLSFSA--SLSLSVVPNVKGSL 61
           MATTIQRFCLDL LSCGKRN+FLS+S SSAPSNF+TFNS SF A  SL+LS VPNVKG L
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 62  SQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRRKGGKKDFKIVRLS 121
            QRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDP KKKKTRRKGG+KDFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 122 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           STARTGFFYAKKKSRKMADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of Lsi05G001360 vs. NCBI nr
Match: gi|778680352|ref|XP_011651295.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 257.3 bits (656), Expect = 1.8e-65
Identity = 138/160 (86.25%), Postives = 147/160 (91.88%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSDSPSSAPSNFVTFNSLSFSASLSLSV--VPNVKGSL 61
           M TTIQRFCLDL LSCG RN FLSDS SS PSNF+TFNS SFSA+LSL++  +PN+KG L
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60

Query: 62  SQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRRKGGKKDFKIVRLS 121
           SQRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDP KKKKTRRKGG KDFKIVRLS
Sbjct: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120

Query: 122 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           STARTGFFYAKKKSRK+ADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of Lsi05G001360 vs. NCBI nr
Match: gi|778680349|ref|XP_011651294.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 1.1e-62
Identity = 138/173 (79.77%), Postives = 147/173 (84.97%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSDSPSSAPSNFVTFNSLSFSASLSLSV--VPNVKGS- 61
           M TTIQRFCLDL LSCG RN FLSDS SS PSNF+TFNS SFSA+LSL++  +PN+KG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 62  ------------LSQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRR 121
                       LSQRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDP KKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 122 KGGKKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           KGG KDFKIVRLSSTARTGFFYAKKKSRK+ADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of Lsi05G001360 vs. NCBI nr
Match: gi|1021556407|ref|XP_016169566.1| (PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis])

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-26
Identity = 89/160 (55.62%), Postives = 100/160 (62.50%), Query Frame = 1


Query: 3   ATTIQRFC--LDLALSCGKRNRFLSDSPSSAPSNFVTFNSLSFSASLSLSVVPNVKGSLS 62
           A  I  FC    L LSC KRNRF               + L FS S SLS     +G LS
Sbjct: 4   AIAIAHFCPGRGLTLSCYKRNRF-------------HLHHLHFS-STSLSHAVFSRGYLS 63

Query: 63  QRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRRKGGKKD-FKIVRLS 122
                R  +   +ICMAKRYAP+TTKRKRLSRKRGGDPDKK+  RRKG KK  FKI+RL 
Sbjct: 64  TEMFTRP-KVHPIICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLV 123

Query: 123 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           S A TGFFYAKKKSR++  KI+L+KYDP    HVLFTE K
Sbjct: 124 SAAGTGFFYAKKKSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

[Close]

BLAST of Lsi05G001360 vs. NCBI nr
Match: gi|1012224651|ref|XP_015936678.1| (PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis])

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-26
Identity = 89/160 (55.62%), Postives = 100/160 (62.50%), Query Frame = 1


Query: 3   ATTIQRFC--LDLALSCGKRNRFLSDSPSSAPSNFVTFNSLSFSASLSLSVVPNVKGSLS 62
           A  I  FC    L LSC KRNRF               + L FS S SLS     +G LS
Sbjct: 4   AIAIAHFCPGRGLTLSCYKRNRF-------------HLHHLRFS-STSLSHAVFSRGYLS 63

Query: 63  QRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPDKKKKTRRKGGKKD-FKIVRLS 122
                R  +   +ICMAKRYAP+TTKRKRLSRKRGGDPDKK+  RRKG KK  FKI+RL 
Sbjct: 64  TEMFTRP-KVHPIICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLV 123

Query: 123 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           S A TGFFYAKKKSR++  KI+L+KYDP    HVLFTE K
Sbjct: 124 SAAGTGFFYAKKKSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

The following BLAST results are available for this feature:

BLAST of Lsi05G001360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_RHOCS	2.8e-07	50.98	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_EHRRW	4.9e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG ...	[more]
RL33_EHRRG	4.9e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 ...	[more]
RL33_EHRCJ	6.3e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2	[more]
RL33_MAGSA	1.4e-06	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]

BLAST of Lsi05G001360 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF8_CUCSA	7.4e-63	79.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1	[more]
A0A061F8Q7_THECC	2.4e-21	45.98	Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1	[more]
A0A059BNX9_EUCGR	1.1e-16	46.04	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1	[more]
U5GTB0_POPTR	2.8e-09	52.78	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g P...	[more]
V7AGZ5_PHAVU	6.2e-09	37.42	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G128100g PE=3 SV=1	[more]

BLAST of Lsi05G001360 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	5.0e-10	60.78	Ribosomal protein L33 family protein	[more]
AT5G18790.1	5.0e-10	60.78	Ribosomal protein L33 family protein	[more]

BLAST of Lsi05G001360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112008\|ref\|XP_008456021.1\|	5.8e-69	90.00	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
gi\|778680352\|ref\|XP_011651295.1\|	1.8e-65	86.25	PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus]	[more]
gi\|778680349\|ref\|XP_011651294.1\|	1.1e-62	79.77	PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus]	[more]
gi\|1021556407\|ref\|XP_016169566.1\|	1.2e-26	55.63	PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis]	[more]
gi\|1012224651\|ref\|XP_015936678.1\|	1.2e-26	55.63	PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018264	Ribosomal_L33_CS
IPR011332	Ribosomal_zn-bd
IPR001705	Ribosomal_L33

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001360.1	Lsi05G001360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 115..159 score: 3.2
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 110..159 score: 1.7
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 111..159 score: 1.4
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 128..146 scor
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 110..159 score: 7.8
None	No IPR available	PANTHER	PTHR15238:SF1	39S RIBOSOMAL PROTEIN L33, MITOCHONDRIAL	coord: 110..159 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001360	Csa3G234020	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001360	CSPI03G19460	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001360	CmoCh16G004370	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001360	Cla004291	Watermelon (97103) v1	lsiwmB361
Lsi05G001360	MELO3C019403	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001360	ClCG05G009260	Watermelon (Charleston Gray)	lsiwcgB332
Lsi05G001360	MELO3C019403.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001360	Cla97C05G091590	Watermelon (97103) v2	lsiwmbB329
Lsi05G001360	Cp4.1LG14g03720	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001360	CsGy3G019400	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001360	Carg11336	Silver-seed gourd	carlsiB595

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001360	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001360	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001360	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001360	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001360	Silver-seed gourd	carlsiB039
Lsi05G001360	Cucumber (Chinese Long) v3	cuclsiB230
Lsi05G001360	Wax gourd	lsiwgoB431
Lsi05G001360	Cucumber (Gy14) v1	cgylsiB003