Cp4.1LG14g03720 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG14g03720
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 2067993 .. 2068504 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCAACAATTCGAAGGCTTTGTTTCGACTCCGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGGTAATTGCGAACATTTCATCCTAAATCATCATCGCGAATCCATTCTCTTATCGTCACTTCTTGTGAAGAATTTGAAAATCATAATCAAAAGACCAGAAAGAATGGGAAGTAAGTATCATAATCGCGAATTTCTGATCGGAGAATTTCGTTTGGTGGGGTTTATTTATAGTTTTTTCTTACAAGGCAAACAGAGGGCGGGGAAATTTAACATTTGGGGGATCTGTTGAAATTTTCAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCCGTAACTTGCATGGCCAAAAGATATGCTCCTAACACTACGAAGAGAAAGGTATGGTTATTTTAG

mRNA sequence

ATGGCGGCAACAATTCGAAGGCTTTGTTTCGACTCCGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGGTAATTGCGAACATTTCATCCTAAATCATCATCGCGAATCCATTCTCTTATCGTCACTTCTTGTGAAGAATTTGAAAATCATAATCAAAAGACCAGAAAGAATGGGAAAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCCGTAACTTGCATGGCCAAAAGATATGCTCCTAACACTACGAAGAGAAAGGTATGGTTATTTTAG

Coding sequence (CDS)

ATGGCGGCAACAATTCGAAGGCTTTGTTTCGACTCCGCGCTTTCTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCTGCTGCTCTCTCGTTGAGCGTCGTTCCCAATGTCAAAGGTAATTGCGAACATTTCATCCTAAATCATCATCGCGAATCCATTCTCTTATCGTCACTTCTTGTGAAGAATTTGAAAATCATAATCAAAAGACCAGAAAGAATGGGAAAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCCGTAACTTGCATGGCCAAAAGATATGCTCCTAACACTACGAAGAGAAAGGTATGGTTATTTTAG

Protein sequence

MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKGNCEHFILNHHRESILLSSLLVKNLKIIIKRPERMGKSLSQSARERSIRHGSVTCMAKRYAPNTTKRKVWLF
BLAST of Cp4.1LG14g03720 vs. TrEMBL
Match: A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.9e-17
Identity = 60/125 (48.00%), Postives = 73/125 (58.40%), Query Frame = 1

Query: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVKGNC 60
           M  TI+R C D  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+KG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  EHFILNHHRESILLSSLLVKNLKIIIKRPERMGKSLSQSARERSIRHGSVTCMAKRYAPN 120
           +H      RES +                    + LSQ A ERSIR+ SV CMAKRYAP 
Sbjct: 61  QH---EKDRESRM--------------------RLLSQRALERSIRYESVICMAKRYAPE 102

Query: 121 TTKRK 124
           TTKRK
Sbjct: 121 TTKRK 102

BLAST of Cp4.1LG14g03720 vs. NCBI nr
Match: gi|778680349|ref|XP_011651294.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 7.1e-17
Identity = 60/125 (48.00%), Postives = 73/125 (58.40%), Query Frame = 1

Query: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVKGNC 60
           M  TI+R C D  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+KG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  EHFILNHHRESILLSSLLVKNLKIIIKRPERMGKSLSQSARERSIRHGSVTCMAKRYAPN 120
           +H      RES +                    + LSQ A ERSIR+ SV CMAKRYAP 
Sbjct: 61  QH---EKDRESRM--------------------RLLSQRALERSIRYESVICMAKRYAPE 102

Query: 121 TTKRK 124
           TTKRK
Sbjct: 121 TTKRK 102

BLAST of Cp4.1LG14g03720 vs. NCBI nr
Match: gi|778680352|ref|XP_011651295.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.7e-13
Identity = 55/123 (44.72%), Postives = 65/123 (52.85%), Query Frame = 1

Query: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSVVPNVKGNCEH 60
           M  TI+R C D  LSCG RN FL DS+SS P +F++F   SFSA LSL++          
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTL---------- 60

Query: 61  FILNHHRESILLSSLLVKNLKIIIKRPERMGKSLSQSARERSIRHGSVTCMAKRYAPNTT 120
                           + NLK +          LSQ A ERSIR+ SV CMAKRYAP TT
Sbjct: 61  --------------TFLPNLKGL----------LSQRALERSIRYESVICMAKRYAPETT 89

Query: 121 KRK 124
           KRK
Sbjct: 121 KRK 89

BLAST of Cp4.1LG14g03720 vs. NCBI nr
Match: gi|659112008|ref|XP_008456021.1| (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 3.2e-09
Identity = 55/126 (43.65%), Postives = 66/126 (52.38%), Query Frame = 1

Query: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCL---SFSAALSLSVVPNVKGN 60
           MA TI+R C D  LSCG+RN+FL +S+SS P    +F      SF A LSL++       
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAP---SNFITFNSPSFPATLSLTL------- 60

Query: 61  CEHFILNHHRESILLSSLLVKNLKIIIKRPERMGKSLSQSARERSIRHGSVTCMAKRYAP 120
              F+ N            VK L             L Q A ERSIR+GSV CMAKRYAP
Sbjct: 61  --SFVPN------------VKGL-------------LPQRALERSIRYGSVICMAKRYAP 89

Query: 121 NTTKRK 124
           +TTKRK
Sbjct: 121 DTTKRK 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LAF8_CUCSA4.9e-1748.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778680349|ref|XP_011651294.1|7.1e-1748.00PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus][more]
gi|778680352|ref|XP_011651295.1|4.7e-1344.72PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus][more]
gi|659112008|ref|XP_008456021.1|3.2e-0943.65PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g03720.1Cp4.1LG14g03720.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g03720CmaCh16G004030Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g03720CmoCh16G004370Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g03720Lsi05G001360Bottle gourd (USVL1VR-Ls)cpelsiB177
Cp4.1LG14g03720CsaV3_3G019510Cucumber (Chinese Long) v3cpecucB0247
Cp4.1LG14g03720Bhi01G001155Wax gourdcpewgoB0295
Cp4.1LG14g03720Carg11336Silver-seed gourdcarcpeB0926
The following gene(s) are paralogous to this gene:

None