CsaV3_3G019510 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_3G019510
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description50S ribosomal protein L33-like
Locationchr3 : 15394926 .. 15401370 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGGCGAAATAGTAATAAAATAATAATAAGCAAAGAGGTTATGAAGAGTATGAGAAGGAAGGAAGGGTTCCTTTTCATGGAAGAAGATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGTATTTCCCAACACGAGAAAGATCGGGAATCAAGAATGAGTGAGTATCATAATCGAGAATCTCTGTGGGGGAGAATTCTTTTGGTGGGGTTTGTTTAAAGTGTATTTTTTCTCCTAACAAACCAAACAGAATCCGGACAAATTTAACATTCGGCGGTCTGTTGGAATTTTCAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGGTATGACAATTGTTTCTTTTGGATTGATTGGTTCTTTATCTCGACTATGTGTGGATTATCATCGTAATTTGCTAATCAAGAGAAGAGTGATGGATGGTATATGTTTTCGTATGTGTCTGTACATGTTTACCCCATTTATGCTAACCTATATGATATCCTTCAAAATTCCCGCATTCTGACTGGTATCAGTTCCGTATGGTATACAAAACATATACTTATCTGATTGAGATTGTATCTTTGAAATGAGATGATGGTGAAAATCTGATACATCTTCTGTTGGGATTATTCTACATGGAAGTTTGGTACATTTTCTGTTTTAATTTTAATTTTTACAACAATACAAAAGTCATTGGGAATAATGTTTGTGTAATTTTTTCGTTATGTTAATGTGATTGTTGATTTGATCATGTAACTAATTTCGATTGCATTCAAATGCAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGAGTCAGATTGTTCTTTGTGATGGATATATACAAAAGATAGACAGATAGCTGGATGGATAGATAGGTAAAACTTTGTTATTATTGAATATGAATGCTTAATGGTTTCGTGAAAACACTGCTTGCTTCACATTTTGAATTCAAAGCTGAAAGTTAGGAAAGATGTTATCGAATGCCGAGCACATTTCCATGACCTTATTTGAATAAGATTTGTTCAATAGGTTTTACAGTTGTCTTTGAATTCTAAGAATACTGAATACGTAGCCATATATAGAAACATACAATTGAAGGAAATACAGAAGAAACTTTTGGACACCGTATTAAAAAAGATTCAATCTTTGGCATTGGTCACGTCTCTTGGATTTAGTTGGGGGCTCATAAAAGGTCGCTGACACATTTTGAGTTATGGCTACTTTGATTACTGTAATCTTTTGTGCTAGTTGAAATGTGAACTGTTGACTATTGAACTTAGCCTGAAAGATACAATGCTGTCAAAATGAAATCTCTAAGCAAAGAAACTTACATTTCTAAAATTGACCCAAACGAACTGATTTAGTGGGCACCTTCTAAACATGTCTATTCTAAATAAATGGAAAACAGAAAAACATGTTAAAGAAAAAAAACTTCGTTTTGGACTCAGTTACAACTGTAAGTATTCAACCCCCACCCACAAAAAAGAAAAATACATTCATTGTACATTCGTCATTCGATGGTGTTGCGTTGTGCCTCATAGATTTCAATGGCTTAGCTGTACAAAATTCAGTTTGATACGAGGGATGAAATGCAAACCAAACATTTAATGTTAAAAAGACTTACGATGTTACACCATCTAGCCATGAAGAAACTTCTTCAATCGAAGGTCTCTTCCTTGGATCTTGTTCTATGCATTTACAAGTAATACCAAGAACCTCTAAAATCTGTTTTTTGCTATTTGTATTCCAAAGTGCAGGATCAATAATCTCCTCTTCTCTCTTTTCTGATTTCTTTTGAATCACCCAAGACACCAAATCCCTGCAGGCTTTACCTTTGCATACCTCTACAGGCCTACGACCAGTAAGAAGCTCAAGGAGAACAACGCCAAAACTGTAAACATCACCCCTGCAGGTTGCAGTCAATGTCTGGCTGTATTCAGGAGGAATATAACCCAAAGTCCCAACCAAGTCCGTGGTAACATGAGTGTCATACGGACGGAGTAATCGTGAAAGACCAAAATCAGCTAAATGAGCCTCAAATCTGTCATCTAGAAGTATGTTGCTGGATTTTACATCTCGGTGAATTATGTTGGGCTGACATTCCTTATGCAAGTAAGCCAATCCGTGAGCAGCACCCTGTGCAATTTTGAGTCTTGTTTCCCATTTTAGTATTGAATCATTATCAACAACCTCGTGAAGCCAATAGTCCAAACTTCCATTTTCCATGTAGGAGTAAATTAATAGCCTGTCATTTCCATGTTTGCAATAACCTTGAAGAGAAACAAGGTTCTTATGCTGCGCTCGAGAAAGAGCTTCTACTTCAGCTTGGAATTCCCGTTCCATTTGACCACAATCTCCTGTAAGCCTCTTGACTGCAGCTTTTGAACCATTGGGAAGGCTGGCTTTGTAAACCAAGCCAAATCCACCACAGCCGATTATGTTTGCTTGGTTGAAATTGCAAGTGGCTTTTAACAACTCAGCAACTGTAAGATCCTTGCATTCTGAATTCTGAAAGAGCACCAACTTTGACGATCCAAGAGCTCCAGATAACCTGTCAGCCCTGTCAAATTCCTCATCAAAACGATTATTTCGTCTATCTCCAACATCTTTTCTGGAAATTTTGAGTAGAACCACTGTAAGCAGCAGGAGGATTGCTGCAGCTGCACCGACTGTAAGGCAAAGAATGAAATTGACTCTTCTCTTTGAAAATTTGTTGGTTTCGGGTTTTGTTTCTAACCCATCACCAGAGTGACAAGGGTTATCAATTTCCCCACAAAGTCCTATATTACCGTCAAAGCTGGAGCTGGGAAAGCTTAAGAATTGCCCTCCACTAGGAATTGGTCCCACCAAGTGATTATTTGCCACGCTAAACTTTGACAAGAATGTGAGCTTGTTGAGTGATGGTGGAATTTGTCCATAAAGGTCATTATTTGACAAATCTAGTGTTTCCAAGTTCTCCATTTCTGATATGGTGCCTGGGATGAAGCCAGTAATATTATTCCTACTCAAATCCAAGACGTGCAGCCATTTTAATCTGCCAATTTCCGGAAAAATAGTTCCATTAATTCTGTTGTAGCTCAAGTAAATCGATGGTGGAAAGCTTGATGCTTGGTTGTATTGCAGACCAGTGGCACTTTGATTTCGTTTGACAAAAAGGGGGATTCCAGCAGAAGATGTCGAACCCGACAAGCTGCCATTTTTGGAAATTAGTGCTTTCATCTGTGTCAAGCTTTTTGGGATTTCTCCAGTCAGTGAATTGTTGGATAAGTCCAAGTAAAACAAATTCTCCAGCTGACCTATCCAAGCAGGGATACTTCCATTTAAGTGATTCCAAGACAAGTCGAGGATGCTTAGTTTCTTGCAACCAACTAACCAACCTGGAATTTGTCCTTTTAGACCACAGTTACCAAATGCCAAAAGCATCAAATTGTTGAAAACAGTTTCGCTCTGTGGGATTTCCTCATTACGAAAGTTCTTTGTAAGAATGAGAACAGTGAGGTTTTTGCAATTCTGTAAAGTAGATAGTGCACCACTCAAATCTATGATACTGTTGTTCGACAAAGATAGAAACGACAGAGAGGAGAGCTTTGCATAATCTCGAGGAATTTGACCAGTTAACTTGTTCCTGGCAAGGCTAAGAGTTTTCAGTTCATGGCAATCAGATAGAGAATTTGGTAGAGGGCCGGAAAAGTGATTTGAGGCTAGATCAAGCATTTGAAGATCTGGTAGCGTAGAAAAGTTAAGATCTACAGTACCAGTTAAAGAATTATTTCTAAGATCAAACACTCTAAGCTTTGAGCACAATGACAGAGATGAAGGCAATAATCCAGAGAACTTGTTGGAGTGTGCAACTAACTCCTCTAATTCTGAAAAATTACCAAATACATTTGGAAGTTCACCAGAAAACTTGTTTCCAAATACTATAAAGGATTTAAGCCTAGAAAGCTTACTCAGTTCCATGCTTAACTGGCCAAAGAAGCTGTTCCCAGGAATTGAAAAATACTCCATGGATGATAATGAATACAACGAACCTGGCAGATGGCCGGTAAGTAAATTACTGTCTGCACGGAAATGTTTGAGAGATTTGCTGCAACTGTCAACACCTCGAAGATTGCCGGATATTTGGTTCAGTGAAATATCAACAAACTGAATCATGTTGGAGGAATTGCAAATCTGTGATGAAAGCTGGCCTGTGAAAGAATTGTTACTTATGTTGAAGGCAACAAGATTTTGAAATCCCACAAGCTGAGGAAAATCCCCAACGAATAAATTGCTGGAAATATTCAGAACACGAACAGATATCAATCCTGAAGTTGCATTTGTGACTGGTCCTGACAGTTTGTTGTAACTTAAATCCAAAACCTGGAGTTGCTTCAAGCTTGAGAATTCTGTTGGCAATACACCTTCAAGCTGATTGTATGATAGATTCAGCCAAATTAACTGATCTAAACCACCAAGTGATTGTGAAACCTTGCCTTTCAGATTCAAATTAGGCAGTTCCAACTTGGTAACTCTGTTAGTAATCGAGCTGTTGCCATCATATCCACAATCCACACCGTCCCAATTGCAGCAGTTGGATTCATTTAACCAAACAGAGAGAACAGAATTATTTGCGAGGCTATTCACAAAGCCCCTCAATGCCAATAAATCTTTTGAATCACAGATTTGATTAGACTGTTTCAAACCCAGAGAAAAAGAGAGCAAAGAACTCAATAATATCCATACGAGGAAAGATAAAGATGGTTTGAGAAGATTAAGCACCATCACCTCTGAGACCAGTAGAGATCTCATGTTGAAAAATAAAAAAGCAGAGCCACTGTAGTAAACTCAGTCAAAACTCCATTTGGTCATACTCAGCTTTTCAGGAAAATGAGAAGAATCCAAATAAAGAAACCTTGCAAACTCAACATGAGAAGGAGGAGAATCCCAAGTTGGGCAACTTGCAAAAGAAGCAAAAAGTGAAAAAGGTAAAATTAAAAAAAAAAAAGAAAAGAAAAGAAAACTGGAATCACCGATCCCTATTCGATACCAAACCCTTTTCCCAATAAACAAAAACAGATGAACCCAGAATTGAACTTCAAACTTCAAACTGAAAGTTTTTTGTTTTCTATGTTCCAGGGAGAAAGACAAATAAAGAAAAAAACCCTTCAACAGAGAGGCAAGAAGATCTCAGATCCCAAAGACAAGAGAAGAGAAGAAGGAGAAGAAGGAGAAGAAGAAGAAAAAGGTTGAAAAGGAAGAGAGAAGGAAATAAAGAAATGATTTCCTAGTTTCCCAGTAGCAACTCCAGTGAAAATCATGACTTGCAAATGAAGTAAAGCAAGTAAAGAGGGAGCAGCGTCAGAAACGCCTTCTTTTATGGGTTATCTGTTTAATTTTAGAGAAACAATGTCAAATCTGGGTTTGGGAAAAAAGATATGGAGACATTGTCCATATCAGGAGAAACCCAAAAGAGAGGGGAAAAGATTAAGAACAGTGGCTGTTGAACAGAGAGGGCAAGAGCAGTGTACTTTACAATATATAATTGGAGAGGCAAGTAAGGGATTGGGTGAAGCTATTTTTTTTTTTTCTTTCTTTCTTTTTCTTTTTCTTGTTCCAGATGAAGACAGAGAGAGCTGACTTGAGGAAAGTTTTGTGTGTTCTTTATGGAGGTAAAATTTCTAAAAGCTTGTCTCTTTTTTATTCTATGGTTTGTTGTGATTGTCAGCACCTACGACGCTAATCAGTTTCTCTCTCTCAATCTCTCTAGAAGAAGAAAAATGCAGAGAAAAAGAGGAAAGGTTGAAAGTGGAGATGGAAAAAAAAATTGGGAAGCGCAGCGCAAGGACCGATGTGAGTTTTCTATTCTTCACGCCTACTCCATCTTTCATGCACGTGTTCACACCAATTATGTCCCTTTTTTTCATTTTCTTTTCTAAAACAAATAGCAATTACGTCTAAAATATTAACAAATATTGTACCAATACAAAATCATTTAATAAATATAATAATGCCA

mRNA sequence

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Coding sequence (CDS)

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Protein sequence

MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Homology
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BLAST of CsaV3_3G019510 vs. NCBI nr
Match: XP_011651295.1 (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 1.0e-64
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRLS 120
           SQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRLS
Sbjct: 61  SQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]
BLAST of CsaV3_3G019510 vs. NCBI nr
Match: XP_011651294.1 (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus] >KGN57632.1 hypothetical protein Csa_3G234020 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 6.1e-62
Identity = 160/173 (92.49%), Postives = 160/173 (92.49%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG-- 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  -----------LLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX 120
                      LLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]
BLAST of CsaV3_3G019510 vs. NCBI nr
Match: XP_008456021.1 (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 3.5e-57
Identity = 142/160 (88.75%), Postives = 148/160 (92.50%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KGLL
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRLS 120
            QRALERSIRY SVICMAKRYAP+TTKR    XXXXXXXXXXXXXXXXXXX DFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSXXXXXXXXXXXXXXXXXXXKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]
BLAST of CsaV3_3G019510 vs. NCBI nr
Match: XP_023552499.1 (uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 119/160 (74.38%), Postives = 134/160 (83.75%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M  TI+R C D  LSCG RN FL DS+SS P +F++F   SFSA LSL++  +PN+K  L
Sbjct: 1   MAATIRRLCFDSALSCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLSV--VPNVKESL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRLS 120
           SQ A ERSIR+ SV CMAKRYAP TTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKI+RLS
Sbjct: 61  SQSARERSIRHGSVTCMAKRYAPNTTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIIRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTEVK
Sbjct: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEVK 158

[Close]
BLAST of CsaV3_3G019510 vs. NCBI nr
Match: XP_022984422.1 (uncharacterized protein LOC111482725 isoform X2 [Cucurbita maxima])

HSP 1 Score: 167.5 bits (423), Expect = 3.6e-38
Identity = 107/160 (66.88%), Postives = 122/160 (76.25%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M  TI+R CL   L CG RN FL DS+SS P +F++F   SFSA LSL +  +PN+K  L
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLV--VPNVKESL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRLS 120
           SQ A ERSIR+ SVICMA+RYAP TTKR         XXXXXXXXXXXXXX DFKI+RLS
Sbjct: 61  SQSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGXXXXXXXXXXXXXXKDFKIIRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTE K
Sbjct: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]
BLAST of CsaV3_3G019510 vs. TAIR10
Match: AT3G06320.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 114 FKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 161
           F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 9   FMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]
BLAST of CsaV3_3G019510 vs. TAIR10
Match: AT5G18790.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0 

Query: 114 FKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 161
           F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 9   FMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]
BLAST of CsaV3_3G019510 vs. Swiss-Prot
Match: sp|B6IN38|RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A +HV+F E K
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]
BLAST of CsaV3_3G019510 vs. Swiss-Prot
Match: sp|Q5FFJ4|RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]
BLAST of CsaV3_3G019510 vs. Swiss-Prot
Match: sp|Q5HBV6|RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]
BLAST of CsaV3_3G019510 vs. Swiss-Prot
Match: sp|Q3YSN4|RL33_EHRCJ (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.5e-07
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 0 

Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A+TGFFY KK++ +K+ +K+  +KYDP+  +HVLF+E K
Sbjct: 9   LVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]
BLAST of CsaV3_3G019510 vs. Swiss-Prot
Match: sp|Q2W1A2|RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 116 IVRLSSTARTGFFY-AKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           +++L STA TGFFY AKK  RK  +K+E +KYDP+  +HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]
BLAST of CsaV3_3G019510 vs. TrEMBL
Match: tr|A0A0A0LAF8|A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 4.0e-62
Identity = 160/173 (92.49%), Postives = 160/173 (92.49%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG-- 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  -----------LLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX 120
                      LLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]
BLAST of CsaV3_3G019510 vs. TrEMBL
Match: tr|A0A1S3C284|A0A1S3C284_CUCME (uncharacterized protein LOC103496073 OS=Cucumis melo OX=3656 GN=LOC103496073 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57
Identity = 142/160 (88.75%), Postives = 148/160 (92.50%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KGLL
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRLS 120
            QRALERSIRY SVICMAKRYAP+TTKR    XXXXXXXXXXXXXXXXXXX DFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSXXXXXXXXXXXXXXXXXXXKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]
BLAST of CsaV3_3G019510 vs. TrEMBL
Match: tr|A0A2K2CB05|A0A2K2CB05_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G396700v3 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 8.0e-10
Identity = 80/163 (49.08%), Postives = 101/163 (61.96%), Query Frame = 0 

Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M+ T    C  LTL C  RN  L+ + S      +  + P     LS  L+     KG L
Sbjct: 1   MMVTTAIHC--LTLPCMPRNPSLTTNLSLSSHLKLATSRP-----LSNLLSHGLFSKGFL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKR---XXXXXXXXXXXXXXXXXXXXXXXXDFKIV 120
           S   +ERSIR +SV+CMA+RY   T KR   XXXXXXXXXXXXXXXXXXXXXX   FKI+
Sbjct: 61  SINTIERSIR-QSVVCMARRYGANTRKRKIQXXXXXXXXXXXXXXXXXXXXXXKDSFKII 120

Query: 121 RLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           RL S A TG+ YAK+K ++ ++K+E++KYDP+   HV F E K
Sbjct: 121 RLVSAAGTGYVYAKRKGKR-SEKLEIKKYDPVVKHHVFFKESK 154

[Close]
BLAST of CsaV3_3G019510 vs. TrEMBL
Match: tr|A0A1U8KE35|A0A1U8KE35_GOSHI (50S ribosomal protein L33-like OS=Gossypium hirsutum OX=3635 GN=LOC107916122 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 114 FKIVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           F  +RL S A TGFFY K+KS RKVA+K+E +KYDP  NRHVLFTE K
Sbjct: 47  FMFIRLVSAAGTGFFYVKRKSARKVAEKLEFRKYDPRVNRHVLFTEQK 94

[Close]
BLAST of CsaV3_3G019510 vs. TrEMBL
Match: tr|A0A251JHW3|A0A251JHW3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189700 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.9e-07
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 0 

Query: 114 FKIVRLSSTARTGFFYAKKK-SRKVADKIEVQKYDPIANRHVLFTEVK 161
           F  +RL S A TGFFY K+K S+K+A+K+E +KYDP  NRHVLFTE K
Sbjct: 9   FMFIRLVSAAGTGFFYVKRKSSKKIAEKLEFRKYDPRVNRHVLFTEAK 56

The following BLAST results are available for this feature:
BLAST of CsaV3_3G019510 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011651295.11.0e-64100.00PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus][more]
XP_011651294.16.1e-6292.49PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus] >KG... [more]
XP_008456021.13.5e-5788.75PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo][more]
XP_023552499.11.1e-3974.38uncharacterized protein LOC111810144 [Cucurbita pepo subsp. pepo][more]
XP_022984422.13.6e-3866.88uncharacterized protein LOC111482725 isoform X2 [Cucurbita maxima][more]
BLAST of CsaV3_3G019510 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06320.13.3e-0960.42Ribosomal protein L33 family protein[more]
AT5G18790.13.3e-0960.42Ribosomal protein L33 family protein[more]
BLAST of CsaV3_3G019510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B6IN38|RL33_RHOCS2.2e-0754.3550S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX... [more]
sp|Q5FFJ4|RL33_EHRRG6.5e-0752.1750S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=... [more]
sp|Q5HBV6|RL33_EHRRW6.5e-0752.1750S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494... [more]
sp|Q3YSN4|RL33_EHRCJ8.5e-0750.0050S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=... [more]
sp|Q2W1A2|RL33_MAGSA1.1e-0654.3550S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70... [more]
BLAST of CsaV3_3G019510 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LAF8|A0A0A0LAF8_CUCSA4.0e-6292.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G234020 PE=4 SV=1[more]
tr|A0A1S3C284|A0A1S3C284_CUCME2.3e-5788.75uncharacterized protein LOC103496073 OS=Cucumis melo OX=3656 GN=LOC103496073 PE=... [more]
tr|A0A2K2CB05|A0A2K2CB05_POPTR8.0e-1049.08Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G396700v3 PE=... [more]
tr|A0A1U8KE35|A0A1U8KE35_GOSHI2.8e-0766.6750S ribosomal protein L33-like OS=Gossypium hirsutum OX=3635 GN=LOC107916122 PE=... [more]
tr|A0A251JHW3|A0A251JHW3_MANES4.9e-0762.50Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189700 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR018264Ribosomal_L33_CS
IPR038584L33_sf
IPR001705Ribosomal_L33
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_3G019510.1CsaV3_3G019510.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001705Ribosomal protein L33PFAMPF00471Ribosomal_L33coord: 116..160
e-value: 2.0E-9
score: 37.6
IPR001705Ribosomal protein L33TIGRFAMTIGR01023TIGR01023coord: 111..160
e-value: 4.6E-12
score: 44.1
IPR038584Ribosomal protein L33 superfamilyGENE3DG3DSA:2.20.28.120coord: 110..160
e-value: 6.9E-18
score: 66.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..113
NoneNo IPR availablePANTHERPTHR15238FAMILY NOT NAMEDcoord: 115..160
IPR018264Ribosomal protein L33, conserved sitePROSITEPS00582RIBOSOMAL_L33coord: 129..147
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 115..160

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_3G019510CSPI03G19460Wild cucumber (PI 183967)cpicucB144
CsaV3_3G019510CmaCh16G004030Cucurbita maxima (Rimu)cmacucB0373
CsaV3_3G019510CmoCh16G004370Cucurbita moschata (Rifu)cmocucB0370
CsaV3_3G019510Cp4.1LG14g03720Cucurbita pepo (Zucchini)cpecucB0247
CsaV3_3G019510Carg11336Silver-seed gourdcarcucB0687
CsaV3_3G019510MELO3C019403Melon (DHL92) v3.5.1cucmeB247
CsaV3_3G019510Bhi01G001155Wax gourdcucwgoB287
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_3G019510Silver-seed gourdcarcucB0048
CsaV3_3G019510Cucumber (Gy14) v2cgybcucB117
CsaV3_3G019510Cucumber (Gy14) v1cgycucB006
CsaV3_3G019510Cucurbita maxima (Rimu)cmacucB0829
CsaV3_3G019510Cucurbita moschata (Rifu)cmocucB0814
CsaV3_3G019510Cucurbita pepo (Zucchini)cpecucB0484
CsaV3_3G019510Bottle gourd (USVL1VR-Ls)cuclsiB230
CsaV3_3G019510Melon (DHL92) v3.6.1cucmedB246
CsaV3_3G019510Watermelon (Charleston Gray)cucwcgB238
CsaV3_3G019510Watermelon (97103) v1cucwmB252
CsaV3_3G019510Watermelon (97103) v2cucwmbB217