CSPI03G19460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G19460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	50S ribosomal protein L33
Location	Chr3 : 15236169 .. 15237326 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGTATTTCCCAACATTTCATCCAAAATCATCACACCTCTCTTTATTGTGGTTTTATCTTAATCCATACAATCAAGACACGAGAAACATCGGGAATCAAGAATGAGTGAGTATCATAATCGAGAATCTCTGTGGGGGAGAATTCTTTTGGTGGGGTTTGTTTAAAGTGTATTTTTTCTCCTAACAAACAAAACAGAATCCGGACAAATTTAACATTCGGCGGTCTGTTGGAATTTTCAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGGTATGACAATTGTTTCTTTTGGATTGATTGGTTCTTTATCTCGACTATGTGTGGATTATCATCGTAATTTGCTAATCAAGAGAAGAGTGATGGATGGTATATGTTTTCGTATGTGTCTGTACATGTTTACCCCATTTATGCTAACCTATATGATATCCTTCAAAATTCCCGCATTCTGACTGGTATCAGTTCCGTATGGTATACAAAACATATACTTATCTGATTGAGATTGTATCTTTGAAATGAGATGATGGTGAAAATCTGATACATCTTCTGTTGGGATTATTCTACATGGAAGTTTGGTACATTTTCTGTTTTAATTTTAATTTTTACAACAATACAAAAGTCATTGGGAATAATGTTTGTGTAATTTTTTCGTTATGTTAATGTGATTGTTGATTTGATCATGTAACTAATTTCGATTGCATTCAAATGCAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

mRNA sequence

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Coding sequence (CDS)

ATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCCTTCTCTGCTACCCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATATGCTCCTGAGACTACAAAGAGAAAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Homology

[Close]

BLAST of CSPI03G19460 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.2e-07
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A +HV+F E K
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of CSPI03G19460 vs. Swiss-Prot
Match: RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CSPI03G19460 vs. Swiss-Prot
Match: RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 6.4e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CSPI03G19460 vs. Swiss-Prot
Match: RL33_EHRCJ (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-07
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 116 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 161
           +V+L+S+A+TGFFY KK++ +K+ +K+  +KYDP+  +HVLF+E K
Sbjct: 9   LVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]

BLAST of CSPI03G19460 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1


Query: 116 IVRLSSTARTGFFY-AKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           +++L STA TGFFY AKK  RK  +K+E +KYDP+  +HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of CSPI03G19460 vs. TrEMBL
Match: A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.1e-77
Identity = 160/173 (92.49%), Postives = 160/173 (92.49%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG-- 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  -----------LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
                      LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CSPI03G19460 vs. TrEMBL
Match: A0A061F8Q7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 74/172 (43.02%), Postives = 97/172 (56.40%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M T+      DL  +C  RN  L++  S          SPSF+A LS +       KG L
Sbjct: 1   MATSAISSLFDLAYACQPRNLQLNNFPSCH-LKLAPSRSPSFTANLSHSFFS----KGCL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGK-------- 120
           S    +RS  Y +V+ MA+RYA  ++ RK+LSRK+GGD  KK K RRK   K        
Sbjct: 61  SMTTFQRSYHY-TVVGMARRYASNSSLRKKLSRKKGGDRGKKNKRRRKRTNKRKGREGKK 120

Query: 121 ----DFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
               +FK+VRL S A TG FYAKKKSR++ +K++ +KYDP   +HVLF EVK
Sbjct: 121 KKRKEFKVVRLVSAAGTGVFYAKKKSRQIKEKLKFRKYDPQVKQHVLFEEVK 166

[Close]

BLAST of CSPI03G19460 vs. TrEMBL
Match: A0A059BNX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 1


Query: 42  FSATLSLTLTFLPNLKGLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAK 101
           FS  L L  TF P    L ++ A +      S++CM+ RYAP++T RK+ +RKRGGDP K
Sbjct: 34  FSRNL-LPSTFSPGCISLSARDAKKPPCH--SLVCMSYRYAPDSTLRKKKARKRGGDPGK 93

Query: 102 KKKTRRKG--GGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTE 159
           K+K RRK     K  K++ L STA TGF YAK +S +  DK++ +KYDP+  +HVLF E
Sbjct: 94  KRKARRKSKRSKKSVKVINLLSTAGTGFSYAKTRSVQSKDKLKCRKYDPVLRQHVLFQE 149

[Close]

BLAST of CSPI03G19460 vs. TrEMBL
Match: U5GTB0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-09
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1


Query: 92  SRKRGGDPAKKKKTRRKGGGKD---FKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDP 151
           SR++GGD  KKKK RRK   K+   FKI+RL S A TG+ YAK+K ++ ++K+E++KYDP
Sbjct: 3   SRRKGGDREKKKKRRRKAARKNKDSFKIIRLVSAAGTGYVYAKRKGKR-SEKLEIKKYDP 62

Query: 152 IANRHVLFTEVK 161
           +   HV F E K
Sbjct: 63  VVKHHVFFKESK 73

[Close]

BLAST of CSPI03G19460 vs. TrEMBL
Match: A0A0D2UUS5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256900 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.6e-07
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 1


Query: 101 KKKKTRRKGGGKDFKIVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEV 160
           KKKKT        F  +RL S A TGFFY K+KS +KVA+K+E +KYDP  NRHVLFTE 
Sbjct: 4   KKKKT--------FMFIRLVSAAGTGFFYVKRKSAKKVAEKLEFRKYDPRVNRHVLFTEQ 56

[Close]

BLAST of CSPI03G19460 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 112 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 161
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of CSPI03G19460 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-09
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 1


Query: 112 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 161
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: gi|778680352|ref|XP_011651295.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 9.7e-80
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
           SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS
Sbjct: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: gi|778680349|ref|XP_011651294.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 5.9e-77
Identity = 160/173 (92.49%), Postives = 160/173 (92.49%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG-- 60
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  -----------LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120
                      LLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: gi|659112008|ref|XP_008456021.1| (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 276.6 bits (706), Expect = 2.8e-71
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 1


Query: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPSF ATLSLTL+F+PN+KGLL
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120
            QRALERSIRY SVICMAKRYAP+TTKRKRLSRKRGGDPAKKKKTRRKGG KDFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
           STARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: gi|1012224651|ref|XP_015936678.1| (PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis])

HSP 1 Score: 115.5 bits (288), Expect = 8.4e-23
Identity = 81/159 (50.94%), Postives = 95/159 (59.75%), Query Frame = 1


Query: 5   IQRFC--LDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLLSQ 64
           I  FC    LTLSC  RN F          + + F+S S S  +          +G LS 
Sbjct: 7   IAHFCPGRGLTLSCYKRNRF--------HLHHLRFSSTSLSHAVFS--------RGYLST 66

Query: 65  RALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKD-FKIVRLSS 124
               R  +   +ICMAKRYAP TTKRKRLSRKRGGDP KK+  RRKG  K  FKI+RL S
Sbjct: 67  EMFTRP-KVHPIICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVS 126

Query: 125 TARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
            A TGFFYAKKKSR++  KI+++KYDP    HVLFTE K
Sbjct: 127 AAGTGFFYAKKKSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

[Close]

BLAST of CSPI03G19460 vs. NCBI nr
Match: gi|1021556407|ref|XP_016169566.1| (PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis])

HSP 1 Score: 115.2 bits (287), Expect = 1.1e-22
Identity = 81/159 (50.94%), Postives = 95/159 (59.75%), Query Frame = 1


Query: 5   IQRFC--LDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLLSQ 64
           I  FC    LTLSC  RN F          + + F+S S S  +          +G LS 
Sbjct: 7   IAHFCPGRGLTLSCYKRNRF--------HLHHLHFSSTSLSHAVFS--------RGYLST 66

Query: 65  RALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKD-FKIVRLSS 124
               R  +   +ICMAKRYAP TTKRKRLSRKRGGDP KK+  RRKG  K  FKI+RL S
Sbjct: 67  EMFTRP-KVHPIICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVS 126

Query: 125 TARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 161
            A TGFFYAKKKSR++  KI+++KYDP    HVLFTE K
Sbjct: 127 AAGTGFFYAKKKSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

The following BLAST results are available for this feature:

BLAST of CSPI03G19460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_RHOCS	2.2e-07	54.35	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_EHRRW	6.4e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG ...	[more]
RL33_EHRRG	6.4e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 ...	[more]
RL33_EHRCJ	8.4e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2	[more]
RL33_MAGSA	1.1e-06	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]

BLAST of CSPI03G19460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF8_CUCSA	4.1e-77	92.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1	[more]
A0A061F8Q7_THECC	1.1e-18	43.02	Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1	[more]
A0A059BNX9_EUCGR	3.4e-15	47.06	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1	[more]
U5GTB0_POPTR	6.3e-09	51.39	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g P...	[more]
A0A0D2UUS5_GOSRA	2.6e-07	59.02	Uncharacterized protein OS=Gossypium raimondii GN=B456_006G256900 PE=3 SV=1	[more]

BLAST of CSPI03G19460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.1e-09	60.00	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.1e-09	60.00	Ribosomal protein L33 family protein	[more]

BLAST of CSPI03G19460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778680352\|ref\|XP_011651295.1\|	9.7e-80	100.00	PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus]	[more]
gi\|778680349\|ref\|XP_011651294.1\|	5.9e-77	92.49	PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus]	[more]
gi\|659112008\|ref\|XP_008456021.1\|	2.8e-71	91.25	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
gi\|1012224651\|ref\|XP_015936678.1\|	8.4e-23	50.94	PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis]	[more]
gi\|1021556407\|ref\|XP_016169566.1\|	1.1e-22	50.94	PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001705	Ribosomal_L33
IPR011332	Ribosomal_zn-bd
IPR018264	Ribosomal_L33_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G19460.1	CSPI03G19460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 116..160 score: 1.
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 111..160 score: 4.6
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 115..160 score: 7.32
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 129..147 scor
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 116..160 score: 1.6
None	No IPR available	PANTHER	PTHR15238:SF1	39S RIBOSOMAL PROTEIN L33, MITOCHONDRIAL	coord: 116..160 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G19460	Cla004291	Watermelon (97103) v1	cpiwmB242
CSPI03G19460	Csa3G234020	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G19460	MELO3C019403	Melon (DHL92) v3.5.1	cpimeB241
CSPI03G19460	ClCG05G009260	Watermelon (Charleston Gray)	cpiwcgB237
CSPI03G19460	Lsi05G001360	Bottle gourd (USVL1VR-Ls)	cpilsiB209
CSPI03G19460	MELO3C019403.2	Melon (DHL92) v3.6.1	cpimedB239
CSPI03G19460	CsaV3_3G019510	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G19460	Cla97C05G091590	Watermelon (97103) v2	cpiwmbB221
CSPI03G19460	Bhi01G001155	Wax gourd	cpiwgoB283
CSPI03G19460	CmaCh16G004030	Cucurbita maxima (Rimu)	cmacpiB326
CSPI03G19460	CmoCh16G004370	Cucurbita moschata (Rifu)	cmocpiB315
CSPI03G19460	CsGy3G019400	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G19460	Carg11336	Silver-seed gourd	carcpiB0685

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G19460	Cucumber (Gy14) v1	cgycpiB003
CSPI03G19460	Cucurbita maxima (Rimu)	cmacpiB705
CSPI03G19460	Cucurbita moschata (Rifu)	cmocpiB698
CSPI03G19460	Cucurbita pepo (Zucchini)	cpecpiB208
CSPI03G19460	Cucurbita pepo (Zucchini)	cpecpiB388
CSPI03G19460	Silver-seed gourd	carcpiB0047