CsGy3G019400 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G019400
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	50S ribosomal protein L33
Location	Chr3 : 15614720 .. 15615907 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGAAGGAAGGGTTCCTTTTCATGGAAGAAGATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCTTCTCTGCTACCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGTATTTCCCAACATTTCATCCAAAATCATCACACCTCTCTTTATTGTGGTTTTATCTTAATCCATACAATCAAGACACGAGAAAGATCGGGAATCAAGAATGAGTGAGTATCATAATCGAGAATCTCTGTGGGGGAGAATTCTTTTGGTGGGTTTGTTTAAAGTGTATTTTTTCTCCTAACAAACCAAACAGAATCCGGACAAATTTAACATTCGGCGGTCTGTTGGAATTTTCAGGATTGTTGTCACAGAGGCTCTGGAAAGATCAATTCGCTATGAATCCGTAATTTGCATGGCCAAAAGATTGCTCCTGAGACTACAAAGAGAAAGGTATGACAATTGTTTCTTTTGGATTGATTGGTTCTTTATCTCGACTATGTGTGGATTATCATCGTAATTTGCTAATCAAGAGAAGAGTGATGGATGGTATATGTTTTCGTATGTGTCTGTACATGTTTACCCCATTTATGCTAACCTGTATGATATCCTTCAAATTCCCGCATTCTGACTGGTATCAGTTCCGTATGGTATACAAAACATATACTTATCTGATTGAGATTGTATCTTTGAAATGAGATGATGGTGAAAATCTGATACTTCTTCTGTTGGGATTATTCTACATGGAAGTTTGGTACATTTTCTGTTTTAATTTTAATTTTTACAACAATACAAAAGTCATTGGGAATAATGTTTGTGTAATTTTTTCGTTATGTTAATGTGATTGTTGATTTGATCATGTAACTAATTTCGATTGCATTCAAATGCAGAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

mRNA sequence

ATGAAAGGAAGGAAGGGTTCCTTTTCATGGAAGAAGATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCTTCTCTGCTACCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGCTCTGGAAAGATCAATTCGCTATGAATCCAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Coding sequence (CDS)

ATGAAAGGAAGGAAGGGTTCCTTTTCATGGAAGAAGATGGTGACAACAATTCAAAGGTTTTGTTTGGATTTGACGCTTTCTTGTGGAATAAGGAATCATTTTCTCAGTGATTCTTCGTCTTCACCTCCTTCAAACTTCATCACCTTCAACTCTCCCTCTTCTCTGCTACCTCTCGCTCACGCTCACCTTCCTTCCCAATCTCAAAGGATTGTTGTCACAGAGGCTCTGGAAAGATCAATTCGCTATGAATCCAGGTTGAGTAGGAAGCGGGGTGGTGATCCAGCCAAGAAAAAGAAGACAAGGAGGAAAGGGGGAGGGAAAGATTTCAAAATAGTCCGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGTAGGAAGGTGGCTGATAAGATTGAGGTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTTACTGAAGTCAAGTGA

Protein sequence

MKGRKGSFSWKKMVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSSLLPLAHAHLPSQSQRIVVTEALERSIRYESRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK

Homology

[Close]

BLAST of CsGy3G019400 vs. NCBI nr
Match: XP_011651295.1 (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 1.4e-39
Identity = 120/161 (74.53%), Postives = 127/161 (78.88%), Query Frame = 0


Query: 13  MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSP--SSLLPLAHAHLPSQSQRI 72
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSP  S+ L L    LP+  + +
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPN-LKGL 60

Query: 73  VVTEALERSIRYESRL---------SRKR-------GXXXXXXXXXXXXXXXKDFKIVRL 132
           +   ALERSIRYES +         + KR        XXXXXXXXXXXXXXX DFKIVRL
Sbjct: 61  LSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXXXXXXXDFKIVRL 120

Query: 133 SSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           SSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 SSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CsGy3G019400 vs. NCBI nr
Match: XP_011651294.1 (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus] >KGN57632.1 hypothetical protein Csa_3G234020 [Cucumis sativus])

HSP 1 Score: 170.6 bits (431), Expect = 4.1e-39
Identity = 121/173 (69.94%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 13  MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSP--SSLLPLAHAHLPS----- 72
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSP  S+ L L    LP+     
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 73  -------QSQRIVVTEALERSIRYESRL---------SRKR-------GXXXXXXXXXXX 132
                     R++   ALERSIRYES +         + KR        XXXXXXXXXXX
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX 120

Query: 133 XXXXKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           XXXX DFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CsGy3G019400 vs. NCBI nr
Match: XP_008456021.1 (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 114/161 (70.81%), Postives = 123/161 (76.40%), Query Frame = 0


Query: 13  MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPS--SLLPLAHAHLPSQSQRI 72
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPS  + L L  + +P+  + +
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPN-VKGL 60

Query: 73  VVTEALERSIRYES----------------RLSRKRGXXXXXXXXXXXXXXXKDFKIVRL 132
           +   ALERSIRY S                RLS    XXXXXXXXXXXXXXXKDFKIVRL
Sbjct: 61  LPQRALERSIRYGSVICMAKRYAPDTTKRKRLSXXXXXXXXXXXXXXXXXXXKDFKIVRL 120

Query: 133 SSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           SSTARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 SSTARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CsGy3G019400 vs. NCBI nr
Match: XP_022984422.1 (uncharacterized protein LOC111482725 isoform X2 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 3.0e-26
Identity = 92/159 (57.86%), Postives = 108/159 (67.92%), Query Frame = 0


Query: 13  MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSSLLPLAHAHLPSQSQRIVV 72
           M  TI+R CL   L CG RN FL DS+SS P +F++F   S    L+   +P+  + +  
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESL-S 60

Query: 73  TEALERSIRYES----------------RLSRKRGXXXXXXXXXXXXXXXKDFKIVRLSS 132
             A ERSIR+ S                RLSRKRG XXXXXXXXXXXXXXKDFKI+RLSS
Sbjct: 61  QSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGXXXXXXXXXXXXXXKDFKIIRLSS 120

Query: 133 TARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           TA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTE K
Sbjct: 121 TAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of CsGy3G019400 vs. NCBI nr
Match: XP_022984421.1 (uncharacterized protein LOC111482725 isoform X1 [Cucurbita maxima])

HSP 1 Score: 127.9 bits (320), Expect = 3.0e-26
Identity = 92/159 (57.86%), Postives = 108/159 (67.92%), Query Frame = 0


Query: 13  MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSSLLPLAHAHLPSQSQRIVV 72
           M  TI+R CL   L CG RN FL DS+SS P +F++F   S    L+   +P+  + +  
Sbjct: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESL-S 60

Query: 73  TEALERSIRYES----------------RLSRKRGXXXXXXXXXXXXXXXKDFKIVRLSS 132
             A ERSIR+ S                RLSRKRG XXXXXXXXXXXXXXKDFKI+RLSS
Sbjct: 61  QSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGXXXXXXXXXXXXXXKDFKIIRLSS 120

Query: 133 TARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           TA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTE K
Sbjct: 121 TAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEAK 158

[Close]

BLAST of CsGy3G019400 vs. TAIR10
Match: AT3G06320.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-09
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 107 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 156
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of CsGy3G019400 vs. TAIR10
Match: AT5G18790.1 (Ribosomal protein L33 family protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-09
Identity = 30/50 (60.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 107 KDFKIVRLSSTARTGFFYAKKKSRK-VADKIEVQKYDPIANRHVLFTEVK 156
           K F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of CsGy3G019400 vs. Swiss-Prot
Match: sp|B6IN38|RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX=414684 GN=rpmG PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.8e-07
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 111 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 156
           +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A +HV+F E K
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of CsGy3G019400 vs. Swiss-Prot
Match: sp|Q5FFJ4|RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 8.2e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 111 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 156
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CsGy3G019400 vs. Swiss-Prot
Match: sp|Q5HBV6|RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=254945 GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.2e-07
Identity = 24/46 (52.17%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 111 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 156
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of CsGy3G019400 vs. Swiss-Prot
Match: sp|Q3YSN4|RL33_EHRCJ (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 23/46 (50.00%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 111 IVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 156
           +V+L+S+A+TGFFY KK++ +K+ +K+  +KYDP+  +HVLF+E K
Sbjct: 9   LVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]

BLAST of CsGy3G019400 vs. Swiss-Prot
Match: sp|Q2W1A2|RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) OX=342108 GN=rpmG PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 111 IVRLSSTARTGFFY-AKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           +++L STA TGFFY AKK  RK  +K+E +KYDP+  +HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of CsGy3G019400 vs. TrEMBL
Match: tr|A0A0A0LAF8|A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.7e-39
Identity = 121/173 (69.94%), Postives = 127/173 (73.41%), Query Frame = 0


Query: 13  MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSP--SSLLPLAHAHLPS----- 72
           MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSP  S+ L L    LP+     
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 73  -------QSQRIVVTEALERSIRYESRL---------SRKR-------GXXXXXXXXXXX 132
                     R++   ALERSIRYES +         + KR        XXXXXXXXXXX
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRXXXXXXXXXXXXXXXXXXX 120

Query: 133 XXXXKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           XXXX DFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 XXXXXDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of CsGy3G019400 vs. TrEMBL
Match: tr|A0A1S3C284|A0A1S3C284_CUCME (uncharacterized protein LOC103496073 OS=Cucumis melo OX=3656 GN=LOC103496073 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 9.6e-37
Identity = 114/161 (70.81%), Postives = 123/161 (76.40%), Query Frame = 0


Query: 13  MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPS--SLLPLAHAHLPSQSQRI 72
           M TTIQRFCLDLTLSCG RN FLS+SSSS PSNFITFNSPS  + L L  + +P+  + +
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPN-VKGL 60

Query: 73  VVTEALERSIRYES----------------RLSRKRGXXXXXXXXXXXXXXXKDFKIVRL 132
           +   ALERSIRY S                RLS    XXXXXXXXXXXXXXXKDFKIVRL
Sbjct: 61  LPQRALERSIRYGSVICMAKRYAPDTTKRKRLSXXXXXXXXXXXXXXXXXXXKDFKIVRL 120

Query: 133 SSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 156
           SSTARTGFFYAKKKSRK+ADKIEVQKYDPIANRHVLFTEVK
Sbjct: 121 SSTARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of CsGy3G019400 vs. TrEMBL
Match: tr|A0A1U8KE35|A0A1U8KE35_GOSHI (50S ribosomal protein L33-like OS=Gossypium hirsutum OX=3635 GN=LOC107916122 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-07
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 107 KDFKIVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 156
           K F  +RL S A TGFFY K+KS RKVA+K+E +KYDP  NRHVLFTE K
Sbjct: 45  KTFMFIRLVSAAGTGFFYVKRKSARKVAEKLEFRKYDPRVNRHVLFTEQK 94

[Close]

BLAST of CsGy3G019400 vs. TrEMBL
Match: tr|A0A251JHW3|A0A251JHW3_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189700 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.7e-07
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 107 KDFKIVRLSSTARTGFFYAKKK-SRKVADKIEVQKYDPIANRHVLFTEVK 156
           K F  +RL S A TGFFY K+K S+K+A+K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSSKKIAEKLEFRKYDPRVNRHVLFTEAK 56

[Close]

BLAST of CsGy3G019400 vs. TrEMBL
Match: tr|A0A1U8LRK4|A0A1U8LRK4_GOSHI (50S ribosomal protein L33-like OS=Gossypium hirsutum OX=3635 GN=LOC107929022 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 107 KDFKIVRLSSTARTGFFYAKKKS-RKVADKIEVQKYDPIANRHVLFTEVK 156
           K F  +RL S A TGFFY K+KS +KVA+K+E +KYDP  NRHVLFTE K
Sbjct: 7   KTFMFIRLVSAAGTGFFYVKRKSAKKVAEKLEFRKYDPRVNRHVLFTEQK 56

The following BLAST results are available for this feature:

BLAST of CsGy3G019400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651295.1	1.4e-39	74.53	PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus]	[more]
XP_011651294.1	4.1e-39	69.94	PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus] >KG...	[more]
XP_008456021.1	1.5e-36	70.81	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
XP_022984422.1	3.0e-26	57.86	uncharacterized protein LOC111482725 isoform X2 [Cucurbita maxima]	[more]
XP_022984421.1	3.0e-26	57.86	uncharacterized protein LOC111482725 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy3G019400 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.8e-09	60.00	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.8e-09	60.00	Ribosomal protein L33 family protein	[more]

BLAST of CsGy3G019400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B6IN38\|RL33_RHOCS	2.8e-07	54.35	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) OX...	[more]
sp\|Q5FFJ4\|RL33_EHRRG	8.2e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) OX=302409 GN=...	[more]
sp\|Q5HBV6\|RL33_EHRRW	8.2e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) OX=25494...	[more]
sp\|Q3YSN4\|RL33_EHRCJ	1.1e-06	50.00	50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) OX=269484 GN=rpmG PE=...	[more]
sp\|Q2W1A2\|RL33_MAGSA	1.4e-06	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]

BLAST of CsGy3G019400 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAF8\|A0A0A0LAF8_CUCSA	2.7e-39	69.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G234020 PE=4 SV=1	[more]
tr\|A0A1S3C284\|A0A1S3C284_CUCME	9.6e-37	70.81	uncharacterized protein LOC103496073 OS=Cucumis melo OX=3656 GN=LOC103496073 PE=...	[more]
tr\|A0A1U8KE35\|A0A1U8KE35_GOSHI	1.6e-07	66.00	50S ribosomal protein L33-like OS=Gossypium hirsutum OX=3635 GN=LOC107916122 PE=...	[more]
tr\|A0A251JHW3\|A0A251JHW3_MANES	2.7e-07	62.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G189700 PE=3 SV=...	[more]
tr\|A0A1U8LRK4\|A0A1U8LRK4_GOSHI	3.6e-07	64.00	50S ribosomal protein L33-like OS=Gossypium hirsutum OX=3635 GN=LOC107929022 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **INTERPRO**
Term	Definition
IPR011332	Ribosomal_zn-bd
IPR018264	Ribosomal_L33_CS
IPR038584	L33_sf
IPR001705	Ribosomal_L33

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G019400.1	CsGy3G019400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 111..155 e-value: 1.9E-9 score: 37.7
IPR001705	Ribosomal protein L33	TIGRFAM	TIGR01023	TIGR01023	coord: 106..155 e-value: 4.4E-12 score: 44.2
IPR038584	Ribosomal protein L33 superfamily	GENE3D	G3DSA:2.20.28.120		coord: 105..155 e-value: 6.5E-18 score: 66.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..107
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 110..155
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 124..142
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	SSF57829	Zn-binding ribosomal proteins	coord: 110..155

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G019400	Cla004291	Watermelon (97103) v1	cgybwmB229
CsGy3G019400	Csa3G234020	Cucumber (Chinese Long) v2	cgybcuB109
CsGy3G019400	MELO3C019403	Melon (DHL92) v3.5.1	cgybmeB210
CsGy3G019400	ClCG05G009260	Watermelon (Charleston Gray)	cgybwcgB214
CsGy3G019400	CSPI03G19460	Wild cucumber (PI 183967)	cgybcpiB110
CsGy3G019400	CmoCh16G004370	Cucurbita moschata (Rifu)	cgybcmoB301
CsGy3G019400	Lsi05G001360	Bottle gourd (USVL1VR-Ls)	cgyblsiB198
CsGy3G019400	Cla97C05G091590	Watermelon (97103) v2	cgybwmbB206
CsGy3G019400	Carg11336	Silver-seed gourd	carcgybB0650

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G019400	Wax gourd	cgybwgoB271
CsGy3G019400	Cucurbita maxima (Rimu)	cgybcmaB332
CsGy3G019400	Cucurbita maxima (Rimu)	cgybcmaB410
CsGy3G019400	Cucurbita moschata (Rifu)	cgybcmoB386
CsGy3G019400	Cucurbita pepo (Zucchini)	cgybcpeB317
CsGy3G019400	Cucurbita pepo (Zucchini)	cgybcpeB362
CsGy3G019400	Melon (DHL92) v3.6.1	cgybmedB215
CsGy3G019400	Silver-seed gourd	carcgybB0043
CsGy3G019400	Cucumber (Chinese Long) v3	cgybcucB117