ClCG05G009260 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G009260
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	50S ribosomal protein L33
Location	CG_Chr05 : 10078499 .. 10079897 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCGACAACAATTCAAAGGTTTTGTTTGGATTTGGCGCTTTCTTGTGGAAAAAGGAACCGATTTCTCAGTGTTTCTGCGTCTTCAGCTCCTTCAAACTTCGTCACTTTCAACTCTCTCTCCTTCTTTGCTGCCCTCTCGCTGAGCGTCCGGAACAATGTCAAAGGTAATTGCGAACATTTCATCCAAAATCATCATCATAAATCCGTTCATCATAGCTCTCTTTAATCCTTTTTTTTTAATATATATGAAAATCACAATCAAGAGACATGAAATAACGGGAATCAAGAGTGAGTATCATAATCGAGAATCTCTGCTGGGGAGAATTTTGTTTGGTGGGGTTTGTTTGAAGTTTTTTTCTAACGAACTAAACAAAAGCAGGAGAAATTTAACATTTGGGGGCCTGTCGAAATTTTCAGGATCGTTGTCACAGAGGGCTCGGGAGAGATCAATTCGTTATGGATCCGTAATTTGTATGGCCAAAAGATATGCTCCTGAAACTACAAAGAGGAAGGTACAAAACTATTATTAGTTAGTCGTTTCTGTTGATGATTGATTGGATCTGTATCTCGTTTTAGCTTCTATAGTGTGTGAATTATGATAGAAATTTGCAAATTGAGAGGACGGTGGTGGGTATTATATGTTTGTGCATGTATCTGTGTTTACCCCTTTTATGTTAACCTGTTTGATGTCCTTCAAAATTCCCACATTTTGCCTGGTATCAGTTCCATATGGTATAGAAAACATATATTTATCTGATTGAGTTTGTATCTTCGAAATGAGATGATGGTGAAAATCTGATAAATCTTCTGTAGGGATTATTCTGTATCGAAGTTTGGTACGTTTTCTGTTCTAACTTTAGTTTTTACAAGAATAGAAAAGTCACTGAGATTTGGGAACAATATTGTGTAATTTGTTCGATATGTTAATGTGTCTGTTGATTTGATCATGTAACCTACTGGTCGATTACATTCAAATGCAGAGGTTAAGTAGGAAGAGGGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGAAAAGGGGGAAAGAAAGATTTCAAAATAGTCAGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTCACTGAAGTCAAGTGAGTCAGGTTGTTCCCCTGTGATGGGTATAAATAAAAGATAGGCAGATAGCTGGATGGATTGATGGATGGATGGATAGATAAATAGGTAAAACTTTGTTATTATTCAGTATGGATGCTTACTGATTGCATGAACCTCACATTTTGAATCGAAAGCTGAAAGTTAGGGAAGATATTATTGGATGCTGAGTACATTGCCATA

mRNA sequence

ATGATGGCGACAACAATTCAAAGGTTTTGTTTGGATTTGGCGCTTTCTTGTGGAAAAAGGAACCGATTTCTCAGTGTTTCTGCGTCTTCAGCTCCTTCAAACTTCGTCACTTTCAACTCTCTCTCCTTCTTTGCTGCCCTCTCGCTGAGCGTCCGGAACAATGTCAAAGGATCGTTGTCACAGAGGGCTCGGGAGAGATCAATTCGTTATGGATCCGTAATTTGTATGGCCAAAAGATATGCTCCTGAAACTACAAAGAGGAAGAGGTTAAGTAGGAAGAGGGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGAAAAGGGGGAAAGAAAGATTTCAAAATAGTCAGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTCACTGAAGTCAAGTGAGTCAGGTTGTTCCCCTGTGATGGGTATAAATAAAAGATAGGCAGATAGCTGGATGGATTGATGGATGGATGGATAGATAAATAGGTAAAACTTTGTTATTATTCAGTATGGATGCTTACTGATTGCATGAACCTCACATTTTGAATCGAAAGCTGAAAGTTAGGGAAGATATTATTGGATGCTGAGTACATTGCCATA

Coding sequence (CDS)

ATGATGGCGACAACAATTCAAAGGTTTTGTTTGGATTTGGCGCTTTCTTGTGGAAAAAGGAACCGATTTCTCAGTGTTTCTGCGTCTTCAGCTCCTTCAAACTTCGTCACTTTCAACTCTCTCTCCTTCTTTGCTGCCCTCTCGCTGAGCGTCCGGAACAATGTCAAAGGATCGTTGTCACAGAGGGCTCGGGAGAGATCAATTCGTTATGGATCCGTAATTTGTATGGCCAAAAGATATGCTCCTGAAACTACAAAGAGGAAGAGGTTAAGTAGGAAGAGGGGTGGTGATCCAGACAAGAAAAAGAAGACAAGGAGAAAAGGGGGAAAGAAAGATTTCAAAATAGTCAGGCTCTCCTCAACTGCTAGGACTGGTTTTTTCTATGCCAAGAAGAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATATGACCCTATTGCAAATCGCCATGTTCTGTTCACTGAAGTCAAGTGA

Protein sequence

MMATTIQRFCLDLALSCGKRNRFLSVSASSAPSNFVTFNSLSFFAALSLSVRNNVKGSLSQRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRRKGGKKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK

Homology

[Close]

BLAST of ClCG05G009260 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.8e-08
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1


Query: 110 KKDFKIVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           K++  +++L S+A TGFFY KKK+ RK  +K+E +KYDP+A +HV+F E K
Sbjct: 3   KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAK 53

[Close]

BLAST of ClCG05G009260 vs. Swiss-Prot
Match: RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 115 IVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of ClCG05G009260 vs. Swiss-Prot
Match: RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 24/46 (52.17%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 115 IVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           +V+L+S+A TG+FY KK++ +K+ +K+  +KYDP+A +HVLFTE K
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEK 54

[Close]

BLAST of ClCG05G009260 vs. Swiss-Prot
Match: RL33_EHRCJ (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-07
Identity = 23/46 (50.00%), Postives = 36/46 (78.26%), Query Frame = 1


Query: 115 IVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTEVK 160
           +V+L+S+A+TGFFY KK++ +K+ +K+  +KYDP+  +HVLF+E K
Sbjct: 9   LVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEK 54

[Close]

BLAST of ClCG05G009260 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1


Query: 115 IVRLSSTARTGFFY-AKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           +++L STA TGFFY AKK  RK  +K+E +KYDP+  +HV F E K
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAK 53

[Close]

BLAST of ClCG05G009260 vs. TrEMBL
Match: A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 3.3e-63
Identity = 135/173 (78.03%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSVSASSAPSNFVTFNSLSFFAALSLSVR--NNVKGS- 61
           M TTIQRFCLDL LSCG RN FLS S+SS PSNF+TFNS SF A LSL++    N+KG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 62  ------------LSQRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRR 121
                       LSQRA ERSIRY SVICMAKRYAPETTKRKRLSRKRGGDP KKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 122 KGGKKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           KGG KDFKIVRLSSTARTGFFYAKKKSRK+ADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of ClCG05G009260 vs. TrEMBL
Match: A0A061F8Q7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.8e-23
Identity = 79/174 (45.40%), Postives = 100/174 (57.47%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRN----RFLSVSASSAPSNFVTFNSLSFFAALSLSVRNNVKG 61
           MAT+      DLA +C  RN     F S     APS      S SF A LS S  +  KG
Sbjct: 1   MATSAISSLFDLAYACQPRNLQLNNFPSCHLKLAPSR-----SPSFTANLSHSFFS--KG 60

Query: 62  SLSQRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRRKGG-------- 121
            LS    +RS  Y +V+ MA+RYA  ++ RK+LSRK+GGD  KK K RRK          
Sbjct: 61  CLSMTTFQRSYHY-TVVGMARRYASNSSLRKKLSRKKGGDRGKKNKRRRKRTNKRKGREG 120

Query: 122 ----KKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
               +K+FK+VRL S A TG FYAKKKSR++ +K++ +KYDP   +HVLF EVK
Sbjct: 121 KKKKRKEFKVVRLVSAAGTGVFYAKKKSRQIKEKLKFRKYDPQVKQHVLFEEVK 166

[Close]

BLAST of ClCG05G009260 vs. TrEMBL
Match: A0A059BNX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-19
Identity = 48/88 (54.55%), Postives = 65/88 (73.86%), Query Frame = 1


Query: 72  SVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRRKG--GKKDFKIVRLSSTARTGFFYA 131
           S++CM+ RYAP++T RK+ +RKRGGDP KK+K RRK    KK  K++ L STA TGF YA
Sbjct: 62  SLVCMSYRYAPDSTLRKKKARKRGGDPGKKRKARRKSKRSKKSVKVINLLSTAGTGFSYA 121

Query: 132 KKKSRKMADKIELQKYDPIANRHVLFTE 158
           K +S +  DK++ +KYDP+  +HVLF E
Sbjct: 122 KTRSVQSKDKLKCRKYDPVLRQHVLFQE 149

[Close]

BLAST of ClCG05G009260 vs. TrEMBL
Match: U5GTB0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.7e-11
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 91  SRKRGGDPDKKKKTRRKGGKKD---FKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDP 150
           SR++GGD +KKKK RRK  +K+   FKI+RL S A TG+ YAK+K  K ++K+E++KYDP
Sbjct: 3   SRRKGGDREKKKKRRRKAARKNKDSFKIIRLVSAAGTGYVYAKRKG-KRSEKLEIKKYDP 62

Query: 151 IANRHVLFTEVK 160
           +   HV F E K
Sbjct: 63  VVKHHVFFKESK 73

[Close]

BLAST of ClCG05G009260 vs. TrEMBL
Match: A0A067L6B4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02043 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-08
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1


Query: 99  DKKKKTRRKGGKKDFKIVRLSSTARTGFFYAKKKS-RKMADKIELQKYDPIANRHVLFTE 158
           DKKKKT        F  +RL S A TGFFY K+KS +K+A+K+E +KYDP  NRHVLFTE
Sbjct: 3   DKKKKT--------FMFIRLVSAAGTGFFYVKRKSSKKLAEKLEFRKYDPRVNRHVLFTE 56

Query: 159 VK 160
            K
Sbjct: 63  AK 56

[Close]

BLAST of ClCG05G009260 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1


Query: 110 KKDFKIVRLSSTARTGFFYAKKKSRK-MADKIELQKYDPIANRHVLFTEVK 160
           KK F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of ClCG05G009260 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-10
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1


Query: 110 KKDFKIVRLSSTARTGFFYAKKKSRK-MADKIELQKYDPIANRHVLFTEVK 160
           KK F  +RL S A TGFFY K+KS K + +K+E +KYDP  NRHVLFTE K
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTEQK 56

[Close]

BLAST of ClCG05G009260 vs. NCBI nr
Match: gi|659112008|ref|XP_008456021.1| (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 5.8e-69
Identity = 139/160 (86.88%), Postives = 147/160 (91.88%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSVSASSAPSNFVTFNSLSFFAALSLSVR--NNVKGSL 61
           MATTIQRFCLDL LSCGKRN+FLS S+SSAPSNF+TFNS SF A LSL++    NVKG L
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 62  SQRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRRKGGKKDFKIVRLS 121
            QRA ERSIRYGSVICMAKRYAP+TTKRKRLSRKRGGDP KKKKTRRKGG+KDFKIVRLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 122 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           STARTGFFYAKKKSRKMADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of ClCG05G009260 vs. NCBI nr
Match: gi|778680352|ref|XP_011651295.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 7.9e-66
Identity = 135/160 (84.38%), Postives = 142/160 (88.75%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSVSASSAPSNFVTFNSLSFFAALSLSVR--NNVKGSL 61
           M TTIQRFCLDL LSCG RN FLS S+SS PSNF+TFNS SF A LSL++    N+KG L
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60

Query: 62  SQRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRRKGGKKDFKIVRLS 121
           SQRA ERSIRY SVICMAKRYAPETTKRKRLSRKRGGDP KKKKTRRKGG KDFKIVRLS
Sbjct: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120

Query: 122 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           STARTGFFYAKKKSRK+ADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 160

[Close]

BLAST of ClCG05G009260 vs. NCBI nr
Match: gi|778680349|ref|XP_011651294.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus])

HSP 1 Score: 249.2 bits (635), Expect = 4.8e-63
Identity = 135/173 (78.03%), Postives = 142/173 (82.08%), Query Frame = 1


Query: 2   MATTIQRFCLDLALSCGKRNRFLSVSASSAPSNFVTFNSLSFFAALSLSVR--NNVKGS- 61
           M TTIQRFCLDL LSCG RN FLS S+SS PSNF+TFNS SF A LSL++    N+KG  
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 62  ------------LSQRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRR 121
                       LSQRA ERSIRY SVICMAKRYAPETTKRKRLSRKRGGDP KKKKTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 122 KGGKKDFKIVRLSSTARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           KGG KDFKIVRLSSTARTGFFYAKKKSRK+ADKIE+QKYDPIANRHVLFTEVK
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTEVK 173

[Close]

BLAST of ClCG05G009260 vs. NCBI nr
Match: gi|1012224651|ref|XP_015936678.1| (PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis])

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 87/160 (54.37%), Postives = 99/160 (61.88%), Query Frame = 1


Query: 3   ATTIQRFC--LDLALSCGKRNRFLSVSASSAPSNFVTFNSLSFFAALSLSVRNNVKGSLS 62
           A  I  FC    L LSC KRNRF               + L F ++ SLS     +G LS
Sbjct: 4   AIAIAHFCPGRGLTLSCYKRNRF-------------HLHHLRF-SSTSLSHAVFSRGYLS 63

Query: 63  QRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRRKGGKKD-FKIVRLS 122
                R  +   +ICMAKRYAP TTKRKRLSRKRGGDPDKK+  RRKG KK  FKI+RL 
Sbjct: 64  TEMFTRP-KVHPIICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLV 123

Query: 123 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           S A TGFFYAKKKSR++  KI+L+KYDP    HVLFTE K
Sbjct: 124 SAAGTGFFYAKKKSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

[Close]

BLAST of ClCG05G009260 vs. NCBI nr
Match: gi|1021556407|ref|XP_016169566.1| (PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis])

HSP 1 Score: 134.4 bits (337), Expect = 1.7e-28
Identity = 87/160 (54.37%), Postives = 99/160 (61.88%), Query Frame = 1


Query: 3   ATTIQRFC--LDLALSCGKRNRFLSVSASSAPSNFVTFNSLSFFAALSLSVRNNVKGSLS 62
           A  I  FC    L LSC KRNRF               + L F ++ SLS     +G LS
Sbjct: 4   AIAIAHFCPGRGLTLSCYKRNRF-------------HLHHLHF-SSTSLSHAVFSRGYLS 63

Query: 63  QRARERSIRYGSVICMAKRYAPETTKRKRLSRKRGGDPDKKKKTRRKGGKKD-FKIVRLS 122
                R  +   +ICMAKRYAP TTKRKRLSRKRGGDPDKK+  RRKG KK  FKI+RL 
Sbjct: 64  TEMFTRP-KVHPIICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLV 123

Query: 123 STARTGFFYAKKKSRKMADKIELQKYDPIANRHVLFTEVK 160
           S A TGFFYAKKKSR++  KI+L+KYDP    HVLFTE K
Sbjct: 124 SAAGTGFFYAKKKSRRI-HKIDLKKYDPKVKLHVLFTEAK 147

The following BLAST results are available for this feature:

BLAST of ClCG05G009260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_RHOCS	9.8e-08	50.98	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_EHRRW	3.7e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG ...	[more]
RL33_EHRRG	3.7e-07	52.17	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 ...	[more]
RL33_EHRCJ	4.9e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2	[more]
RL33_MAGSA	1.1e-06	54.35	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]

BLAST of ClCG05G009260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF8_CUCSA	3.3e-63	78.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1	[more]
A0A061F8Q7_THECC	5.8e-23	45.40	Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1	[more]
A0A059BNX9_EUCGR	8.6e-19	54.55	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1	[more]
U5GTB0_POPTR	1.7e-11	52.78	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g P...	[more]
A0A067L6B4_JATCU	1.1e-08	58.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02043 PE=3 SV=1	[more]

BLAST of ClCG05G009260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	1.7e-10	60.78	Ribosomal protein L33 family protein	[more]
AT5G18790.1	1.7e-10	60.78	Ribosomal protein L33 family protein	[more]

BLAST of ClCG05G009260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112008\|ref\|XP_008456021.1\|	5.8e-69	86.88	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
gi\|778680352\|ref\|XP_011651295.1\|	7.9e-66	84.38	PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus]	[more]
gi\|778680349\|ref\|XP_011651294.1\|	4.8e-63	78.03	PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus]	[more]
gi\|1012224651\|ref\|XP_015936678.1\|	1.7e-28	54.38	PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis]	[more]
gi\|1021556407\|ref\|XP_016169566.1\|	1.7e-28	54.38	PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001705	Ribosomal_L33
IPR011332	Ribosomal_zn-bd
IPR018264	Ribosomal_L33_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG05G009260.1	ClCG05G009260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 115..159 score: 3.2
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 110..159 score: 1.7
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 111..159 score: 1.4
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 128..146 scor
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 110..159 score: 7.8
None	No IPR available	PANTHER	PTHR15238:SF1	39S RIBOSOMAL PROTEIN L33, MITOCHONDRIAL	coord: 110..159 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG05G009260	Csa3G234020	Cucumber (Chinese Long) v2	cuwcgB230
ClCG05G009260	MELO3C019403	Melon (DHL92) v3.5.1	mewcgB427
ClCG05G009260	Cla004291	Watermelon (97103) v1	wcgwmB286
ClCG05G009260	Cla97C05G091590	Watermelon (97103) v2	wcgwmbB229
ClCG05G009260	CSPI03G19460	Wild cucumber (PI 183967)	cpiwcgB237
ClCG05G009260	CmoCh16G004370	Cucurbita moschata (Rifu)	cmowcgB291
ClCG05G009260	Lsi05G001360	Bottle gourd (USVL1VR-Ls)	lsiwcgB332
ClCG05G009260	CsGy3G019400	Cucumber (Gy14) v2	cgybwcgB214
ClCG05G009260	MELO3C019403.2	Melon (DHL92) v3.6.1	medwcgB417
ClCG05G009260	Carg11336	Silver-seed gourd	carwcgB0636

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG05G009260	Cucumber (Gy14) v1	cgywcgB003
ClCG05G009260	Cucurbita maxima (Rimu)	cmawcgB297
ClCG05G009260	Cucurbita maxima (Rimu)	cmawcgB659
ClCG05G009260	Cucurbita moschata (Rifu)	cmowcgB660
ClCG05G009260	Cucurbita pepo (Zucchini)	cpewcgB208
ClCG05G009260	Cucurbita pepo (Zucchini)	cpewcgB394
ClCG05G009260	Silver-seed gourd	carwcgB0045
ClCG05G009260	Cucumber (Chinese Long) v3	cucwcgB238
ClCG05G009260	Wax gourd	wcgwgoB427