CmaCh16G004030 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G004030
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L33
Location	Cma_Chr16 : 2006109 .. 2010998 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCAACAATTCGAAGGCTTTGTTTGGGCTCAGCGCTTTTTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCGGCTGCTCTCTCGTTGCTCGTCGTTCCCAATGTCAAAGGTAATTGCGAACATTTCATCCTAAATAATCATCGCGAATCCATTCTCTTATCGTCACTTCGTATGAAGAATTTGAAAATCACGATCAAAAGACCAGAAAGAATGGGAACAAAGTATCATAATCGAGAATTTCTGATCGGAGAATTTTGTTCGGTGGGGTTTATTTATAGTTTTTTCTTACAAGACAAGCAGAGGGCGGGGAAATTTAACATTTGGGGGATCTGTTGAAATTTTCAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCCGTAATTTGCATGGCCAGAAGATATGCTCCTAACACTACGAAGAGAAAGGTATGGTCCTTTTAGCTTCGACAGCGTGTGGATCATGGTAGAAATTTGCAAATCGAGAGGACGGGGACTCATATCATGTGTTTATGTATTTGTTTATGTTAGGGCTCTAACTATATTTCTTCTCGTGATCAATCGATAGAAAATAAATACACTTATAAGTACATGTTCTCCTTATCAATTTCGATTAATTTCAATATGAACAAAAGTGGAATATATGAAATCATCTTCAAATAGAATTGACCCCTTTCATGTTAATTTGTATGACACCCTTCAAAATTCCAGCCTTCTGATTGCTATCACTTCCAATAGCACAAGCCTATCGCGATATTGTCTTCTTTGGGCTTTCCCTTCAAAATTTTCAAAATGCATCTGCTAGGGAATTTTCAAAATGCATCTGCTAGGGAGAAGTCGTGAGATCTCACATTATTGAACATATATTTATCTAATTTGAGTTTGTATCTACAGAAAATTTGATTAACATTCCAAGTATGGATTATTCTACTTCAATGATGCAAAAGTCATTGGGAATAATATTGTGTAATTTGTTCATTATGTTAATGTCACTGTTGATTTGATCATGAAATAACTTGTCGATTGCATTCAAATGCAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAGGAAGACGAGGAGGAAAGGGGGAAGGAAAGATTTCAAAATAATCCGACTCTCCTCAACCGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCTTGCAAAACGACATGTTCTGTTCACTGAAGCCAAGTAAGTCAGATTGTCCCCCGTGATTGTATATATATATATATATATATATATATATGGATAGATACATACATAGATAGGGTAGATCGGTCAAGCATTGCTTGTAGGAATCTTTTGTGCTAGTTGTGTGTGAACAGTTGACTATTGAACTTAGTCTGAAAGATCCATTGCTGTCTGAAGGAAATCTTTGATTTCAAGAACTAGAGGAAATCCAATTCTAAAATTGACCTGCATAGTAAAAGCTTTAATAATCATGGGCATAAGCACCAAGTTATGTACACTTTCCATCCTTCCTACCTTTACTCACAGCCTGGTAAGATTGATTTAAATAGTTTTGCTTTACAATATCCAGTTTGATATACGAGGGATGAAATACAAACCAAACGTTGAGAATGGAAAAACCTACAATGTAACACCATCTAGCCATGAAGAAACTTCTTCAATCGAAGGTCTCTTCCTTGGATCTTGGTCTATGCATTTACAAGTAATACTAAGGACCTCTAAAATCTGCTTTTTGCTATTTGTATCCCAAATTGCAGGATCAATAATCTCCTCTTCTTTCTTTTCTGATTTCTTCTGAATCACCCATGATACCAGATCCCTGCAAGCTTTACCTTTGCATACCTCTACAGGCCTCCGCCCAGTTAGAAGCTCGAGAAGAACAACGCCAAAACTGTATACATCGCCCCTGCAAGTTGCAATTAATGTCTGGCTGTATTCGGGAGGGATATAACCCAATGTCCCAACCAAGTCCGTGGTAACATGAGTGTCATACGGCCGGAGTAATCTTGAAAGGCCAAAATCAGCTAAATGTGCCTCGAATTTGTCATCCAGAAGTATGTTGCTCGACTTGACATCGCGGTGAATTATGTTTGGCTGACATTCCTTATGCAAGTAAGCCAATCCATGAGCTGCACCCTGTGCGATTTTGAGTCTTGCTTCCCATTTTAGTATTGAATCTTCATCATCAACAATCTCATGAAGCCAATAGTCCAAACTTCCATTCTCCATGTAGGAGTAAATTAATAGCCTGTCGTTTCCATGTTTGCAGTAACCTTGAAGAGAAACAAGGTTCTTATGCTGCGCTCGAGAAAGAGCTTCTACTTCAGCTTGGAATTCGCGTTCCATCTGACCACAATCTCCTGTAAGCCTCTTGACTGCAGCTTTTGAACCATTGGGAAGGCTGGCTTTGTAAACCAGGCCAAATCCACCACAGCCGATTATGTTTGCTTGGTTGAAATTGCAAGTAGCTTTTAACAACTCTGCAACTGTAAGATCCTTGCATTCTGAATTCTGAAAGAGCACCAACTTTGATGATCCAAGAGCTCCAGATAACCTGTTAGGCCGGTCAAATTCCTCGTCAAAACTGTTATTCCGATCTCCAACATCTTTCCTGGACATTTTGAGTAGAACCACTGTAAGGACCAGGAGGATTGCTGCAGCCGCTCCGACTGTAAGGCAGAGAATGACACTTCTCCCAACTTTTCTCTTTGAGTAAGTGTCGGTTTCAGGTCTTTTTTCTAACCCATCAACAGAACGACAAGGGTTGTCGATTTCCCCACAAAGTCCTGCATTACCATCAAAGCTTGAGCTGGGAAAACTTAAGAATTGCCCTCCATTTGGAATTGGTCCCTCCAAGTGATTATTTGCCACGCTGAACTTTGACAAGAATGTAAGCTTGTTAAGTGATGGAGGAATTCGTCCATAAAGATCATTATTCGACAAATCTAAGGCTTCCAAGTTCTCCATCTCTGATATGGTGTTTGGGATGGACCCAGTTATATTGTTCCTACTCAAATCCAAGGCATGCAGCCCTTTTAATCCACCAATTTCTGGCCAAATAGTTCCATTAATTCTGTTGTAGCTCAAGTAAATCGATGGTGGAAAGCTCGACGCTTGGTTGTATTGCAAACCAGTGGAACTTTGATTTCGTTTGACAAAAAGGGGGATTCCAGCAGATGATGTCGAACCCGACAAGCTGCAGTTTCTGGAAATTAGTGCTTTCATCTGTGTCAAGCTTTTTGGGATTTCTCCTGTCAGAGAATTGTTGGATAAGTCCAAATAAAATAAATTCTCCAGCTGACCAATCCAAGCAGGGATACTTCCATCTAAGTGATTCCAAGACAAATCAAGGATGCTCAATTTCTTGCAACCTACTAACCAACCTGGAATTTGTCCTCTCAGGCCACAGTTACCAAATGCCAAAAGCATCAAGTTGTCGAAAACAGTTTCACTCTGTGGAATTTTCTCATTACGAAAGTTCTTTGTAAGAATAAGAACAGTCAGGTTCTTGCAATTATGTAGAATAGATAATGCACCACTCAAGTCTATAATACTGTTGTTCGACAAAGATAGAAAGGACAGAGAGGAAAGCTTAGCATAATCTCGAGGAATTTGACCAGTTAACTTGTTCTTGGCAAGGCTAAGAGTTTTCAATTCATGGCAATCAGATAGAGAATTCGGTAGAGGCCCCGAAAAGTGATTAGAGGCTAGATCAAGCATTTGAAGATCTGGTAGCCTAGAAAAATTGAGATCTATAGCAGCAGTAAAGGAATTATTTCTAAGATCAAGAACTCTAAGCTTTGAGCACAATGACAGAGATGAAGGCAAAATTCCAGAGAACAAGTTGGAATGTGCAACTAACTCCCGTAATTCTGAAAAATTACCGAACACATTTGGAAGTTCCCCAGAAAACTTGTTTCCGAATACGATAAAGGATTCAAGCCTAGAAAGCTTACTCAGATCCATGCTTAACTGGCCAAAGAAGCTGTTTCCAGGGATTGAAAAGTACTCCAAAAATGATAACGAATACAATGATTCTGGAAGATGTCCAGTAAGCAAGTTATTATCTGCACGGAAATGTTTGAGAGATTTGCTGCAATCGTTCACTCCTTGAAGATTGCCGGATATTTGGTTCAGTGAAATATCAACAACCTGAATCATGTTGGAGGAATTGCAAATCTGTGAAGAAAACTGTCCTGTGAAAGAATTGTTACTTATATTGAAGGCAACAAGATTCTGAAATCCCACTAGCTGGGGGAAATCCCCAATGAATGAATTACTGGAAATATTAAGAACACGAACAGATATCAATCCTGAAGTTGCATTGGTGACTGATCCTGACAGCTTATTGTAACTCAAATCCAATACCTGGAGTTGCTTCAAGCTTGAGAATTCTGTTGGCAAAACACCTTCAAGCTGATTGTATGATAGATTCAGCCAAATTAACTGATCTAAACCACCAAGAGACTGTGAAATCTTGCCTTTCAGATTCATATTAGGCAGTTCTAACCTGGTAACTCTGTTAGTGATAGAGCTGTTGCTATCATATCCACAAACGACACCATCCCAAATGCAGCAGTTGGGTTCCTTCAACCATACAGAGATAACAGAACTATTTGAAAGGCTATTCAGAAAGCCCCTCAATGCCAGTAAATCTTTTGGATCACAGAGTTTATTCGACTGTTTCAGACCCAAAGAGAAGGAAAACAAGCAACTCAATAATAACATCCATTTGAGGAAAGCCGGTTTGACAAGAGAAAGCACCATATCTGGTCATACACTTAGCTGTTAA

mRNA sequence

ATGGCGGCAACAATTCGAAGGCTTTGTTTGGGCTCAGCGCTTTTTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCGGCTGCTCTCTCGTTGCTCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCCGTAATTTGCATGGCCAGAAGATATGCTCCTAACACTACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAGGAAGACGAGGAGGAAAGGGGGAAGGAAAGATTTCAAAATAATCCGACTCTCCTCAACCGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCTTGCAAAACGACATGTTCTGTTCACTGAAGCCAATAACCTTGAAGAGAAACAAGGTTCTTATGCTGCGCTCGAGAAAGAGCTTCTACTTCAGCTTGGAATTCGCGTTCCATCTGACCACAATCTCCTACCCAAAGAGAAGGAAAACAAGCAACTCAATAATAACATCCATTTGAGGAAAGCCGGTTTGACAAGAGAAAGCACCATATCTGGTCATACACTTAGCTGTTAA

Coding sequence (CDS)

ATGGCGGCAACAATTCGAAGGCTTTGTTTGGGCTCAGCGCTTTTTTGTGGAGAAAGGAACCGATTTCTCTGTGATTCTGCGTCTTCAACTCCTCCAAGCTTCGTCTCTTTCAAGTGTCTCTCCTTCTCGGCTGCTCTCTCGTTGCTCGTCGTTCCCAATGTCAAAGAATCGTTGTCACAGAGCGCTCGGGAGAGATCAATTCGTCATGGATCCGTAATTTGCATGGCCAGAAGATATGCTCCTAACACTACGAAGAGAAAGAGGTTGAGTAGGAAGAGGGGTGGTGATCCAGAAAAGAAAAGGAAGACGAGGAGGAAAGGGGGAAGGAAAGATTTCAAAATAATCCGACTCTCCTCAACCGCTGGGACTGGTTTTTTCTATGCCAAGAAAAAAAGCAGGAAGATGGCTGATAAGATTGAGCTCCAGAAATTTGACCCTCTTGCAAAACGACATGTTCTGTTCACTGAAGCCAATAACCTTGAAGAGAAACAAGGTTCTTATGCTGCGCTCGAGAAAGAGCTTCTACTTCAGCTTGGAATTCGCGTTCCATCTGACCACAATCTCCTACCCAAAGAGAAGGAAAACAAGCAACTCAATAATAACATCCATTTGAGGAAAGCCGGTTTGACAAGAGAAAGCACCATATCTGGTCATACACTTAGCTGTTAA

Protein sequence

MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEANNLEEKQGSYAALEKELLLQLGIRVPSDHNLLPKEKENKQLNNNIHLRKAGLTRESTISGHTLSC

Homology

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BLAST of CmaCh16G004030 vs. Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.2e-07
Identity = 26/45 (57.78%), Postives = 35/45 (77.78%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFY-AKKKSRKMADKIELQKFDPLAKRHVLFTEA 158
           +I+L STAGTGFFY AKK  RK  +K+E +K+DP+ ++HV F EA
Sbjct: 8   LIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEA 52

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BLAST of CmaCh16G004030 vs. Swiss-Prot
Match: RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 6.8e-07
Identity = 22/44 (50.00%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTE 157
           +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTE 52

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BLAST of CmaCh16G004030 vs. Swiss-Prot
Match: RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.8e-07
Identity = 22/44 (50.00%), Postives = 39/44 (88.64%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTE 157
           +++L+S+AGTG+FY KK++ +K+ +K+  +K+DP+A++HVLFTE
Sbjct: 9   LVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTE 52

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BLAST of CmaCh16G004030 vs. Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.8e-07
Identity = 25/45 (55.56%), Postives = 37/45 (82.22%), Query Frame = 1


Query: 114 IIRLSSTAGTGFFYAKKKS-RKMADKIELQKFDPLAKRHVLFTEA 158
           +I+L S+A TGFFY KKK+ RK  +K+E +K+DP+A++HV+F EA
Sbjct: 8   LIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEA 52

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BLAST of CmaCh16G004030 vs. Swiss-Prot
Match: RL33_MARMM (50S ribosomal protein L33 OS=Maricaulis maris (strain MCS10) GN=rpmG PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-06
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1


Query: 115 IRLSSTAGTGFFYA-KKKSRKMADKIELQKFDPLAKRHVLFTEA 158
           IRL+STAGTG+FY  KK +R M +K+ L+K+DP+A++HV F EA
Sbjct: 9   IRLNSTAGTGYFYVTKKNARTMTEKLVLKKYDPVARKHVDFKEA 52

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BLAST of CmaCh16G004030 vs. TrEMBL
Match: A0A0A0LAF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.9e-48
Identity = 115/171 (67.25%), Postives = 131/171 (76.61%), Query Frame = 1


Query: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLV--VPNVK--- 60
           M  TI+R CL   L CG RN FL DS+SS P +F++F   SFSA LSL +  +PN+K   
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  ------ES----LSQSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRR 120
                 ES    LSQ A ERSIR+ SVICMA+RYAP TTKRKRLSRKRGGDP KK+KTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE 157
           KGG KDFKI+RLSSTA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTE
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTE 171

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BLAST of CmaCh16G004030 vs. TrEMBL
Match: A0A061F8Q7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 5.0e-17
Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 1


Query: 27  ASSTPPSFVSFKCLSFSAALSLLVVPNVKESLSQSARERSIRHGSVICMARRYAPNTTKR 86
           A S  PSF +    SF +          K  LS +  +RS  H +V+ MARRYA N++ R
Sbjct: 34  APSRSPSFTANLSHSFFS----------KGCLSMTTFQRSY-HYTVVGMARRYASNSSLR 93

Query: 87  KRLSRKRGGDPEKKRKTRRKGG------------RKDFKIIRLSSTAGTGFFYAKKKSRK 146
           K+LSRK+GGD  KK K RRK              RK+FK++RL S AGTG FYAKKKSR+
Sbjct: 94  KKLSRKKGGDRGKKNKRRRKRTNKRKGREGKKKKRKEFKVVRLVSAAGTGVFYAKKKSRQ 153

Query: 147 MADKIELQKFDPLAKRHVLFTE 157
           + +K++ +K+DP  K+HVLF E
Sbjct: 154 IKEKLKFRKYDPQVKQHVLFEE 164

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BLAST of CmaCh16G004030 vs. TrEMBL
Match: A0A059BNX9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-16
Identity = 50/88 (56.82%), Postives = 67/88 (76.14%), Query Frame = 1


Query: 71  SVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGR--KDFKIIRLSSTAGTGFFYA 130
           S++CM+ RYAP++T RK+ +RKRGGDP KKRK RRK  R  K  K+I L STAGTGF YA
Sbjct: 62  SLVCMSYRYAPDSTLRKKKARKRGGDPGKKRKARRKSKRSKKSVKVINLLSTAGTGFSYA 121

Query: 131 KKKSRKMADKIELQKFDPLAKRHVLFTE 157
           K +S +  DK++ +K+DP+ ++HVLF E
Sbjct: 122 KTRSVQSKDKLKCRKYDPVLRQHVLFQE 149

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BLAST of CmaCh16G004030 vs. TrEMBL
Match: U5GTB0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.7e-10
Identity = 40/71 (56.34%), Postives = 54/71 (76.06%), Query Frame = 1


Query: 90  SRKRGGDPEKKRKTRRKGGRKD---FKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDP 149
           SR++GGD EKK+K RRK  RK+   FKIIRL S AGTG+ YAK+K  K ++K+E++K+DP
Sbjct: 3   SRRKGGDREKKKKRRRKAARKNKDSFKIIRLVSAAGTGYVYAKRKG-KRSEKLEIKKYDP 62

Query: 150 LAKRHVLFTEA 158
           + K HV F E+
Sbjct: 63  VVKHHVFFKES 72

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BLAST of CmaCh16G004030 vs. TrEMBL
Match: A0A0B2RXC0_GLYSO (50S ribosomal protein L33 OS=Glycine soja GN=glysoja_001580 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-08
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 1


Query: 100 KRKTRRKGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTEA 158
           +RK  R   ++  KIIR+ STAGTGFFYA +KSRKM DK+EL+K+DP  KRHV+F E+
Sbjct: 25  QRKASRSSSKEKNKIIRVVSTAGTGFFYAMRKSRKM-DKLELKKYDPKVKRHVVFRES 81

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BLAST of CmaCh16G004030 vs. TAIR10
Match: AT3G06320.1 (AT3G06320.1 Ribosomal protein L33 family protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 109 RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTE 157
           +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTE 54

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BLAST of CmaCh16G004030 vs. TAIR10
Match: AT5G18790.1 (AT5G18790.1 Ribosomal protein L33 family protein)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-09
Identity = 29/49 (59.18%), Postives = 36/49 (73.47%), Query Frame = 1


Query: 109 RKDFKIIRLSSTAGTGFFYAKKKSRK-MADKIELQKFDPLAKRHVLFTE 157
           +K F  IRL S AGTGFFY K+KS K + +K+E +K+DP   RHVLFTE
Sbjct: 6   KKTFMFIRLVSAAGTGFFYVKRKSTKGLLEKLEFRKYDPRVNRHVLFTE 54

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BLAST of CmaCh16G004030 vs. NCBI nr
Match: gi|659112008|ref|XP_008456021.1| (PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo])

HSP 1 Score: 217.2 bits (552), Expect = 2.8e-53
Identity = 116/158 (73.42%), Postives = 133/158 (84.18%), Query Frame = 1


Query: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLV--VPNVKESL 60
           MA TI+R CL   L CG+RN+FL +S+SS P +F++F   SF A LSL +  VPNVK  L
Sbjct: 1   MATTIQRFCLDLTLSCGKRNQFLSNSSSSAPSNFITFNSPSFPATLSLTLSFVPNVKGLL 60

Query: 61  SQSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLS 120
            Q A ERSIR+GSVICMA+RYAP+TTKRKRLSRKRGGDP KK+KTRRKGGRKDFKI+RLS
Sbjct: 61  PQRALERSIRYGSVICMAKRYAPDTTKRKRLSRKRGGDPAKKKKTRRKGGRKDFKIVRLS 120

Query: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE 157
           STA TGFFYAKKKSRKMADKIE+QK+DP+A RHVLFTE
Sbjct: 121 STARTGFFYAKKKSRKMADKIEVQKYDPIANRHVLFTE 158

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BLAST of CmaCh16G004030 vs. NCBI nr
Match: gi|778680352|ref|XP_011651295.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 7.7e-51
Identity = 113/158 (71.52%), Postives = 129/158 (81.65%), Query Frame = 1


Query: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLV--VPNVKESL 60
           M  TI+R CL   L CG RN FL DS+SS P +F++F   SFSA LSL +  +PN+K  L
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGLL 60

Query: 61  SQSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKDFKIIRLS 120
           SQ A ERSIR+ SVICMA+RYAP TTKRKRLSRKRGGDP KK+KTRRKGG KDFKI+RLS
Sbjct: 61  SQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRRKGGGKDFKIVRLS 120

Query: 121 STAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE 157
           STA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTE
Sbjct: 121 STARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTE 158

[Close]

BLAST of CmaCh16G004030 vs. NCBI nr
Match: gi|778680349|ref|XP_011651294.1| (PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 2.7e-48
Identity = 115/171 (67.25%), Postives = 131/171 (76.61%), Query Frame = 1


Query: 1   MAATIRRLCLGSALFCGERNRFLCDSASSTPPSFVSFKCLSFSAALSLLV--VPNVK--- 60
           M  TI+R CL   L CG RN FL DS+SS P +F++F   SFSA LSL +  +PN+K   
Sbjct: 1   MVTTIQRFCLDLTLSCGIRNHFLSDSSSSPPSNFITFNSPSFSATLSLTLTFLPNLKGIS 60

Query: 61  ------ES----LSQSARERSIRHGSVICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRR 120
                 ES    LSQ A ERSIR+ SVICMA+RYAP TTKRKRLSRKRGGDP KK+KTRR
Sbjct: 61  QHEKDRESRMRLLSQRALERSIRYESVICMAKRYAPETTKRKRLSRKRGGDPAKKKKTRR 120

Query: 121 KGGRKDFKIIRLSSTAGTGFFYAKKKSRKMADKIELQKFDPLAKRHVLFTE 157
           KGG KDFKI+RLSSTA TGFFYAKKKSRK+ADKIE+QK+DP+A RHVLFTE
Sbjct: 121 KGGGKDFKIVRLSSTARTGFFYAKKKSRKVADKIEVQKYDPIANRHVLFTE 171

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BLAST of CmaCh16G004030 vs. NCBI nr
Match: gi|1012224651|ref|XP_015936678.1| (PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis])

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 72  VICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKD-FKIIRLSSTAGTGFFYAKK 131
           +ICMA+RYAPNTTKRKRLSRKRGGDP+KKR  RRKG +K  FKIIRL S AGTGFFYAKK
Sbjct: 61  IICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVSAAGTGFFYAKK 120

Query: 132 KSRKMADKIELQKFDPLAKRHVLFTEA 158
           KSR++  KI+L+K+DP  K HVLFTEA
Sbjct: 121 KSRRI-HKIDLKKYDPKVKLHVLFTEA 146

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BLAST of CmaCh16G004030 vs. NCBI nr
Match: gi|1021556407|ref|XP_016169566.1| (PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis])

HSP 1 Score: 121.3 bits (303), Expect = 2.1e-24
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = 1


Query: 72  VICMARRYAPNTTKRKRLSRKRGGDPEKKRKTRRKGGRKD-FKIIRLSSTAGTGFFYAKK 131
           +ICMA+RYAPNTTKRKRLSRKRGGDP+KKR  RRKG +K  FKIIRL S AGTGFFYAKK
Sbjct: 61  IICMAKRYAPNTTKRKRLSRKRGGDPDKKRHRRRKGSKKKLFKIIRLVSAAGTGFFYAKK 120

Query: 132 KSRKMADKIELQKFDPLAKRHVLFTEA 158
           KSR++  KI+L+K+DP  K HVLFTEA
Sbjct: 121 KSRRI-HKIDLKKYDPKVKLHVLFTEA 146

The following BLAST results are available for this feature:

BLAST of CmaCh16G004030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL33_MAGSA	5.2e-07	57.78	50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 70...	[more]
RL33_EHRRG	6.8e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 ...	[more]
RL33_EHRRW	6.8e-07	50.00	50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG ...	[more]
RL33_RHOCS	6.8e-07	55.56	50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RL33_MARMM	1.2e-06	59.09	50S ribosomal protein L33 OS=Maricaulis maris (strain MCS10) GN=rpmG PE=3 SV=1	[more]

BLAST of CmaCh16G004030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF8_CUCSA	1.9e-48	67.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G234020 PE=4 SV=1	[more]
A0A061F8Q7_THECC	5.0e-17	45.77	Uncharacterized protein OS=Theobroma cacao GN=TCM_031611 PE=4 SV=1	[more]
A0A059BNX9_EUCGR	1.9e-16	56.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F01166 PE=4 SV=1	[more]
U5GTB0_POPTR	2.7e-10	56.34	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s40710g P...	[more]
A0A0B2RXC0_GLYSO	4.3e-08	60.34	50S ribosomal protein L33 OS=Glycine soja GN=glysoja_001580 PE=4 SV=1	[more]

BLAST of CmaCh16G004030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G06320.1	2.6e-09	59.18	Ribosomal protein L33 family protein	[more]
AT5G18790.1	2.6e-09	59.18	Ribosomal protein L33 family protein	[more]

BLAST of CmaCh16G004030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112008\|ref\|XP_008456021.1\|	2.8e-53	73.42	PREDICTED: uncharacterized protein LOC103496073 [Cucumis melo]	[more]
gi\|778680352\|ref\|XP_011651295.1\|	7.7e-51	71.52	PREDICTED: uncharacterized protein LOC105434866 isoform X2 [Cucumis sativus]	[more]
gi\|778680349\|ref\|XP_011651294.1\|	2.7e-48	67.25	PREDICTED: uncharacterized protein LOC105434866 isoform X1 [Cucumis sativus]	[more]
gi\|1012224651\|ref\|XP_015936678.1\|	2.1e-24	75.86	PREDICTED: uncharacterized protein LOC107462582 [Arachis duranensis]	[more]
gi\|1021556407\|ref\|XP_016169566.1\|	2.1e-24	75.86	PREDICTED: uncharacterized protein LOC107612311 [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001705	Ribosomal_L33
IPR011332	Ribosomal_zn-bd
IPR018264	Ribosomal_L33_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G004030.1	CmaCh16G004030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001705	Ribosomal protein L33	PFAM	PF00471	Ribosomal_L33	coord: 114..157 score: 2.
IPR001705	Ribosomal protein L33	TIGRFAMs	TIGR01023	TIGR01023	coord: 109..157 score: 8.9
IPR011332	Zinc-binding ribosomal protein	unknown	SSF57829	Zn-binding ribosomal proteins	coord: 113..157 score: 4.94
IPR018264	Ribosomal protein L33, conserved site	PROSITE	PS00582	RIBOSOMAL_L33	coord: 127..145 scor
None	No IPR available	PANTHER	PTHR15238	FAMILY NOT NAMED	coord: 114..161 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G004030	Cla004291	Watermelon (97103) v1	cmawmB317
CmaCh16G004030	MELO3C019403	Melon (DHL92) v3.5.1	cmameB298
CmaCh16G004030	CSPI03G19460	Wild cucumber (PI 183967)	cmacpiB326
CmaCh16G004030	CmoCh16G004370	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G004030	Cp4.1LG14g03720	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G004030	MELO3C019403.2	Melon (DHL92) v3.6.1	cmamedB346
CmaCh16G004030	CsaV3_3G019510	Cucumber (Chinese Long) v3	cmacucB0373
CmaCh16G004030	Cla97C05G091590	Watermelon (97103) v2	cmawmbB347
CmaCh16G004030	Bhi01G001155	Wax gourd	cmawgoB0438
CmaCh16G004030	Carg11336	Silver-seed gourd	carcmaB0924

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G004030	Cucumber (Gy14) v2	cgybcmaB332
CmaCh16G004030	Cucumber (Gy14) v2	cgybcmaB500
CmaCh16G004030	Silver-seed gourd	carcmaB0053
CmaCh16G004030	Cucumber (Chinese Long) v3	cmacucB0396
CmaCh16G004030	Watermelon (97103) v2	cmawmbB340
CmaCh16G004030	Wax gourd	cmawgoB0451
CmaCh16G004030	Cucurbita maxima (Rimu)	cmacmaB351
CmaCh16G004030	Cucumber (Gy14) v1	cgycmaB0007
CmaCh16G004030	Cucumber (Gy14) v1	cgycmaB0321
CmaCh16G004030	Cucurbita moschata (Rifu)	cmacmoB338
CmaCh16G004030	Wild cucumber (PI 183967)	cmacpiB345
CmaCh16G004030	Cucumber (Chinese Long) v2	cmacuB320
CmaCh16G004030	Cucumber (Chinese Long) v2	cmacuB340
CmaCh16G004030	Watermelon (Charleston Gray)	cmawcgB288
CmaCh16G004030	Watermelon (Charleston Gray)	cmawcgB297
CmaCh16G004030	Watermelon (97103) v1	cmawmB325
CmaCh16G004030	Cucurbita pepo (Zucchini)	cmacpeB351
CmaCh16G004030	Bottle gourd (USVL1VR-Ls)	cmalsiB311
CmaCh16G004030	Bottle gourd (USVL1VR-Ls)	cmalsiB316