CmaCh17G011010 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh17G011010
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	TSPO(Outer membrane tryptophan-rich sensory protein)-related
Location	Cma_Chr17 : 7752846 .. 7753412 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGTGACTCCCCCGCCGTCCCCGCCGCCGCCGACGAGGTTAGCACGAAGAGAGCAAAGAACAAGGCCATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACCCTCCTCTCCATCCTCCTCCTTTCCAAACCCAAAAACTACTACCCCTCCGCCACCAAACCCTTCTGGGTTCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAAGCCCAACGCGCTGTATCTCTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTCGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCTTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGGGGAGTGAACGGGATTGCGGCGGACTTGGTTAGACCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTCACAATGGTTTCTGTTTGA

mRNA sequence

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGTGACTCCCCCGCCGTCCCCGCCGCCGCCGACGAGGTTAGCACGAAGAGAGCAAAGAACAAGGCCATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACCCTCCTCTCCATCCTCCTCCTTTCCAAACCCAAAAACTACTACCCCTCCGCCACCAAACCCTTCTGGGTTCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAAGCCCAACGCGCTGTATCTCTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTCGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCTTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGGGGAGTGAACGGGATTGCGGCGGACTTGGTTAGACCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTCACAATGGTTTCTGTTTGA

Coding sequence (CDS)

ATGGCTTCCACCGAGCTTAAGCACCGAACAACAGGTGACTCCCCCGCCGTCCCCGCCGCCGCCGACGAGGTTAGCACGAAGAGAGCAAAGAACAAGGCCATCGCCAAACGAGGCCTGAAGTCTCTAGCTGTGGCAGTCTCCATCCCCATCGCCGTCACCCTCCTCTCCATCCTCCTCCTTTCCAAACCCAAAAACTACTACCCCTCCGCCACCAAACCCTTCTGGGTTCCATCGGCAAGGGTCGTGAATTGGGGGTCGTTGGCTTCTAGCTTGTTGATGGGCATCTCGAGCTGGCTGTTCTGGGCTGAAGGCGGGTTCCAAGCTAAGCCCAACGCGCTGTATCTCTACACTTTGTACTTGGTGCTGTGCATGGCGTGGTACGGCCTCGTGCTCGGAGCCGGGTCGCGATGGCTAGGCTCGGTGGCTTGTTTGGGGAAGACGGCGACGCTGGTTGGGTGTGACCGGTTGTTCCGGGGAGTGAACGGGATTGCGGCGGACTTGGTTAGACCTTGTTTGGTTTGGTCTGTTTTTCTTACTATCGTGAGTCTCACAATGGTTTCTGTTTGA

Protein sequence

MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTIVSLTMVSV

Homology

[Close]

BLAST of CmaCh17G011010 vs. Swiss-Prot
Match: TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 74/193 (38.34%), Postives = 109/193 (56.48%), Query Frame = 1


Query: 1   MASTELKHRTTGDSPAVPAA--------ADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D  A   A        AD+   KR + +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  KPNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCL 180
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 VWSVFLTIVSLTM 186
            W+ F+  V++ +
Sbjct: 181 AWAAFVAAVNVKL 193

[Close]

BLAST of CmaCh17G011010 vs. TrEMBL
Match: A0A0A0KAU9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396370 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.5e-66
Identity = 132/191 (69.11%), Postives = 159/191 (83.25%), Query Frame = 1


Query: 1   MASTELKHRTTGDSP--AVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           MAST+LKHR T DS   +  +A D   TK++KNK IAKRGL+SLA+A+SIP+++TL  IL
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LLSKPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
           L S  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF A+PNALYLY 
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180
           LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV 
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTIVSLTMVSV 189
           LT+V+LT+VS+
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of CmaCh17G011010 vs. TrEMBL
Match: A0A067JW57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13908 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-34
Identity = 83/187 (44.39%), Postives = 117/187 (62.57%), Query Frame = 1


Query: 1   MASTELKHRTT-GDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILL 60
           M S  + HRT   D PA   A  ++ T++ K  A+AKRG++SLA+AV++P+++TL +   
Sbjct: 1   MDSQNITHRTRDADEPATATANRDMKTRQDKRMAMAKRGIRSLAIAVALPLSLTLFNFYF 60

Query: 61  LSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLY 120
                N Y  A+KP W P    +++ S  S+ LMG+S+WL WAEGGF  KP A+ LY   
Sbjct: 61  FGS-SNGYGIASKPSWFPPIWALHFFSFVSTFLMGLSAWLVWAEGGFHKKPRAISLYLAQ 120

Query: 121 LVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLT 180
           L L +AW  +V   G+ W+G +ACL     +VGC R F+ VN IA DLV+PCL W+ FL 
Sbjct: 121 LGLGLAWDPIVFRMGATWVGLLACLAMFGAIVGCSRQFKEVNPIAGDLVKPCLAWAAFLA 180

Query: 181 IVSLTMV 187
           IV+L +V
Sbjct: 181 IVNLKLV 186

[Close]

BLAST of CmaCh17G011010 vs. TrEMBL
Match: A0A0D2SYA6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011200 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.0e-34
Identity = 87/188 (46.28%), Postives = 113/188 (60.11%), Query Frame = 1


Query: 1   MASTELKHRTTGDSPAVPAAADEVS--TKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           M S  LKHR+  D       ++E +   +R K  A+AKRGL+SL +AVS P+++TLL+I 
Sbjct: 1   MESQNLKHRSRDDPRFTTTTSNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSLTLLNIY 60

Query: 61  LLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTL 120
           L    + Y  S  KPFW P   +++ G LASS +MG+S+W  W EGGF  KP AL LY  
Sbjct: 61  LFGSGRGY-ASLAKPFWFPPLWLLHTGCLASSFVMGLSAWFVWVEGGFHVKPTALSLYLG 120

Query: 121 YLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFL 180
           YL L MAW+  VL  G+ W G +  L    TLVGC R F  VN IA + V PCL W+ FL
Sbjct: 121 YLGLSMAWHPTVLWMGASWAGLLVSLAMVGTLVGCSRDFGKVNPIAGNSVMPCLAWAAFL 180

Query: 181 TIVSLTMV 187
             V+L +V
Sbjct: 181 ATVNLKLV 187

[Close]

BLAST of CmaCh17G011010 vs. TrEMBL
Match: F6HZ32_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00140 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 6.6e-34
Identity = 89/186 (47.85%), Postives = 119/186 (63.98%), Query Frame = 1


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           MAST LK R   D P+ P   +  +TKR K  A+AKRGL+SL  AVSIP+++TL++I   
Sbjct: 1   MASTNLKQRIK-DGPSTPFPTNN-TTKREKKMAMAKRGLRSLTTAVSIPLSLTLVTI-YF 60

Query: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120
           S   + Y +  KPFW P    V+  S+ASSLLMG+S+WL WAEGGF  KP AL L+   L
Sbjct: 61  SGATDRYRTLPKPFWFPPLWAVHATSMASSLLMGLSAWLVWAEGGFHKKPTALPLFVAQL 120

Query: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180
            L +    +V G G   +G V C+G    LVGC R+FR VN IA DLV+PCL W+ ++ +
Sbjct: 121 ALSLIRDPIVFGYGGTRVGLVVCMGLFGALVGCARMFREVNPIAGDLVKPCLAWTAYVGV 180

Query: 181 VSLTMV 187
           V+L ++
Sbjct: 181 VTLKLL 183

[Close]

BLAST of CmaCh17G011010 vs. TrEMBL
Match: B9T0W2_RICCO (Peripheral-type benzodiazepine receptor, putative OS=Ricinus communis GN=RCOM_1439860 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 8.6e-34
Identity = 86/188 (45.74%), Postives = 114/188 (60.64%), Query Frame = 1


Query: 1   MASTELKHRTTG-DSPAVPAAADEVS-TKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           M S  +KHRT   D    P   D  S ++R K  A+AKRG++SLA+AV+ P+++TL +I 
Sbjct: 1   MDSQSIKHRTKDPDQSDTPKETDMRSYSRRDKRMAMAKRGIRSLAIAVAFPLSLTLFNIY 60

Query: 61  LLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTL 120
                  Y P +TKPFW P    +++  LASS LMG+S+WL WAEGGF  KP AL  Y  
Sbjct: 61  FFGSRNGYGPLSTKPFWFPPMWALHFTCLASSFLMGLSAWLVWAEGGFHKKPAALSFYLA 120

Query: 121 YLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFL 180
            L L + W  +V    + W+G V CL    +LVGC R F+ VN IA DLV+P L W+ FL
Sbjct: 121 QLGLGLIWDPIVFRMDATWVGLVVCLAMFGSLVGCSRQFKEVNPIAGDLVKPSLTWAAFL 180

Query: 181 TIVSLTMV 187
            IV+L +V
Sbjct: 181 AIVNLKLV 188

[Close]

BLAST of CmaCh17G011010 vs. TAIR10
Match: AT2G47770.1 (AT2G47770.1 TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 131.3 bits (329), Expect = 6.1e-31
Identity = 74/193 (38.34%), Postives = 109/193 (56.48%), Query Frame = 1


Query: 1   MASTELKHRTTGDSPAVPAA--------ADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAV 60
           M S ++++R   D  A   A        AD+   KR + +A+AKRGLKSL VAV+ P+ V
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKGKRDQKRAMAKRGLKSLTVAVAAPVLV 60

Query: 61  TLLSILLLSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNA 120
           TL +   L     Y   A    W+P   +++   LASS LMG+++WL W +GGF  KPNA
Sbjct: 61  TLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKPNA 120

Query: 121 LYLYTLYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCL 180
           LYLY    +LC+ W  +    GS   G    LG++A L GC + F  ++ +A +LV+PCL
Sbjct: 121 LYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKPCL 180

Query: 181 VWSVFLTIVSLTM 186
            W+ F+  V++ +
Sbjct: 181 AWAAFVAAVNVKL 193

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: gi|659101426|ref|XP_008451600.1| (PREDICTED: translocator protein homolog [Cucumis melo])

HSP 1 Score: 260.4 bits (664), Expect = 2.5e-66
Identity = 133/191 (69.63%), Postives = 158/191 (82.72%), Query Frame = 1


Query: 1   MASTELKHRTTGDSPAVPAAADEVS--TKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           MAST+LKHR T DS        +V+  TK+A+NK IAKRGL+SLA+A+SIP+++TLL I 
Sbjct: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIF 60

Query: 61  LLSKPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
           L S  KNYYP SA +PFWVPS +VVNWGSL SSLLMG+++WL WAEGGF ++PNALYLY 
Sbjct: 61  LFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180
           LYLVLC+AWY LV GAG+R L S+ACLGKTA LVGCDRLFRGVN IAADLV+PCLVWSV 
Sbjct: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180

Query: 181 LTIVSLTMVSV 189
           LT+V+LTM S+
Sbjct: 181 LTVVNLTMASL 191

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: gi|449436787|ref|XP_004136174.1| (PREDICTED: translocator protein homolog [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 9.3e-66
Identity = 132/191 (69.11%), Postives = 159/191 (83.25%), Query Frame = 1


Query: 1   MASTELKHRTTGDSP--AVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60
           MAST+LKHR T DS   +  +A D   TK++KNK IAKRGL+SLA+A+SIP+++TL  IL
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  LLSKPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120
           L S  KNYYP SA KPFWVPSA+VVNWGSL SSLLMG+++WL WAEGGF A+PNALYLY 
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180
           LY VLC+ WY L+ GAG+R L ++ACLGKTA LVGCDRLFRGVN +AADLV+PCLVWSV 
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTIVSLTMVSV 189
           LT+V+LT+VS+
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: gi|802688691|ref|XP_012082728.1| (PREDICTED: translocator protein homolog [Jatropha curcas])

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-34
Identity = 83/187 (44.39%), Postives = 117/187 (62.57%), Query Frame = 1


Query: 1   MASTELKHRTT-GDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILL 60
           M S  + HRT   D PA   A  ++ T++ K  A+AKRG++SLA+AV++P+++TL +   
Sbjct: 1   MDSQNITHRTRDADEPATATANRDMKTRQDKRMAMAKRGIRSLAIAVALPLSLTLFNFYF 60

Query: 61  LSKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLY 120
                N Y  A+KP W P    +++ S  S+ LMG+S+WL WAEGGF  KP A+ LY   
Sbjct: 61  FGS-SNGYGIASKPSWFPPIWALHFFSFVSTFLMGLSAWLVWAEGGFHKKPRAISLYLAQ 120

Query: 121 LVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLT 180
           L L +AW  +V   G+ W+G +ACL     +VGC R F+ VN IA DLV+PCL W+ FL 
Sbjct: 121 LGLGLAWDPIVFRMGATWVGLLACLAMFGAIVGCSRQFKEVNPIAGDLVKPCLAWAAFLA 180

Query: 181 IVSLTMV 187
           IV+L +V
Sbjct: 181 IVNLKLV 186

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: gi|1009148500|ref|XP_015891970.1| (PREDICTED: translocator protein homolog [Ziziphus jujuba])

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-34
Identity = 81/187 (43.32%), Postives = 119/187 (63.64%), Query Frame = 1


Query: 2   ASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLLS 61
           + + LK RT G+    P A+ +  ++R K  A+AKRG +SLAVAVS+P++++LLSI L  
Sbjct: 3   SQSSLKQRTRGEP--TPTASKDNRSRRDKRMAMAKRGFRSLAVAVSLPVSLSLLSIYL-G 62

Query: 62  KPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYLV 121
              N Y  ++KPFW P    +++ ++ASS LMG+S+WL WA+GGF  KP A YLY   L 
Sbjct: 63  GSSNSYAISSKPFWFPPLWALHFTTIASSFLMGLSAWLVWAQGGFHKKPMAAYLYLTQLA 122

Query: 122 LCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTIV 181
             +AW  +V G GS   G + CLG    L+GC   F+ VN IA D+++PC+ W+ FL IV
Sbjct: 123 FSLAWDPIVFGFGSTRAGLIVCLGMLVALLGCSSAFKQVNPIAGDVMKPCIAWNAFLAIV 182

Query: 182 SLTMVSV 189
           +  ++ +
Sbjct: 183 NFKLIFI 186

[Close]

BLAST of CmaCh17G011010 vs. NCBI nr
Match: gi|470108978|ref|XP_004290779.1| (PREDICTED: translocator protein homolog [Fragaria vesca subsp. vesca])

HSP 1 Score: 152.9 bits (385), Expect = 5.5e-34
Identity = 85/186 (45.70%), Postives = 113/186 (60.75%), Query Frame = 1


Query: 1   MASTELKHRTTGDSPAVPAAADEVSTKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSILLL 60
           M S  LK R   D P      +  + K      +AKRGL+SLA+AVS+P+A+ L++I L 
Sbjct: 1   MDSQNLKQRRVADDPNTTMNKNNYAGKPEMRMKMAKRGLRSLAIAVSLPVALHLITIYLA 60

Query: 61  SKPKNYYPSATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYTLYL 120
           S     Y +A+KPFW P    +    LASS LMG+S+WL WAEGGF   P AL LY   L
Sbjct: 61  STDS--YRTASKPFWFPPMWGLRLTCLASSFLMGLSAWLVWAEGGFHKNPMALPLYLSQL 120

Query: 121 VLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVFLTI 180
           VL +AW  +V GAG+ W+G V C+G    LVGC ++F+ VN  A  L++PCL W  FL +
Sbjct: 121 VLSLAWDPIVFGAGAPWVGLVVCMGMFGALVGCSKVFQDVNATAGYLMKPCLAWVAFLAV 180

Query: 181 VSLTMV 187
           V+L +V
Sbjct: 181 VNLKLV 184

The following BLAST results are available for this feature:

BLAST of CmaCh17G011010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TSPO_ARATH	1.1e-29	38.34	Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1 SV=1	[more]

BLAST of CmaCh17G011010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAU9_CUCSA	6.5e-66	69.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396370 PE=4 SV=1	[more]
A0A067JW57_JATCU	1.7e-34	44.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13908 PE=4 SV=1	[more]
A0A0D2SYA6_GOSRA	5.0e-34	46.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G011200 PE=4 SV=1	[more]
F6HZ32_VITVI	6.6e-34	47.85	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g00140 PE=4 SV=...	[more]
B9T0W2_RICCO	8.6e-34	45.74	Peripheral-type benzodiazepine receptor, putative OS=Ricinus communis GN=RCOM_14...	[more]

BLAST of CmaCh17G011010 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47770.1	6.1e-31	38.34	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

BLAST of CmaCh17G011010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101426\|ref\|XP_008451600.1\|	2.5e-66	69.63	PREDICTED: translocator protein homolog [Cucumis melo]	[more]
gi\|449436787\|ref\|XP_004136174.1\|	9.3e-66	69.11	PREDICTED: translocator protein homolog [Cucumis sativus]	[more]
gi\|802688691\|ref\|XP_012082728.1\|	2.5e-34	44.39	PREDICTED: translocator protein homolog [Jatropha curcas]	[more]
gi\|1009148500\|ref\|XP_015891970.1\|	2.5e-34	43.32	PREDICTED: translocator protein homolog [Ziziphus jujuba]	[more]
gi\|470108978\|ref\|XP_004290779.1\|	5.5e-34	45.70	PREDICTED: translocator protein homolog [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004307	TspO_MBR

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh17G011010.1	CmaCh17G011010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004307	TspO/MBR-related protein	PIR	PIRSF005859	PBR	coord: 31..188 score: 9.6
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 21..185 score: 8.4
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 45..186 score: 7.7
None	No IPR available	PANTHER	PTHR10057:SF0	PROTEIN C41G7.9, ISOFORM B	coord: 21..185 score: 8.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh17G011010	Cucsa.205710	Cucumber (Gy14) v1	cgycmaB0606
CmaCh17G011010	Cucsa.253100	Cucumber (Gy14) v1	cgycmaB0713
CmaCh17G011010	Cla015051	Watermelon (97103) v1	cmawmB328
CmaCh17G011010	Csa3G154290	Cucumber (Chinese Long) v2	cmacuB363
CmaCh17G011010	Csa7G396370	Cucumber (Chinese Long) v2	cmacuB388
CmaCh17G011010	MELO3C016017	Melon (DHL92) v3.5.1	cmameB320
CmaCh17G011010	ClCG09G006030	Watermelon (Charleston Gray)	cmawcgB306
CmaCh17G011010	CSPI03G14400	Wild cucumber (PI 183967)	cmacpiB367
CmaCh17G011010	CSPI07G17310	Wild cucumber (PI 183967)	cmacpiB392
CmaCh17G011010	CmoCh17G010760	Cucurbita moschata (Rifu)	cmacmoB353
CmaCh17G011010	Lsi02G023870	Bottle gourd (USVL1VR-Ls)	cmalsiB348
CmaCh17G011010	Cp4.1LG12g05440	Cucurbita pepo (Zucchini)	cmacpeB371
CmaCh17G011010	Cp4.1LG08g04900	Cucurbita pepo (Zucchini)	cmacpeB410
CmaCh17G011010	MELO3C016017.2	Melon (DHL92) v3.6.1	cmamedB373
CmaCh17G011010	MELO3C006663.2	Melon (DHL92) v3.6.1	cmamedB400
CmaCh17G011010	CsaV3_7G029110	Cucumber (Chinese Long) v3	cmacucB0462
CmaCh17G011010	CsaV3_3G014620	Cucumber (Chinese Long) v3	cmacucB0433
CmaCh17G011010	Cla97C09G168590	Watermelon (97103) v2	cmawmbB386
CmaCh17G011010	Cla97C05G087600	Watermelon (97103) v2	cmawmbB368
CmaCh17G011010	Bhi09G000700	Wax gourd	cmawgoB0494
CmaCh17G011010	Bhi01G000717	Wax gourd	cmawgoB0478
CmaCh17G011010	CsGy3G014540	Cucumber (Gy14) v2	cgybcmaB351
CmaCh17G011010	CsGy7G015750	Cucumber (Gy14) v2	cgybcmaB925
CmaCh17G011010	Carg07183	Silver-seed gourd	carcmaB0142

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh17G011010	CmaCh06G014990	Cucurbita maxima (Rimu)	cmacmaB371

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh17G011010	Silver-seed gourd	carcmaB1133
CmaCh17G011010	Cucumber (Chinese Long) v3	cmacucB0437
CmaCh17G011010	Watermelon (97103) v2	cmawmbB360
CmaCh17G011010	Wax gourd	cmawgoB0454
CmaCh17G011010	Cucurbita maxima (Rimu)	cmacmaB250
CmaCh17G011010	Cucurbita maxima (Rimu)	cmacmaB382
CmaCh17G011010	Cucumber (Gy14) v1	cgycmaB0198
CmaCh17G011010	Cucurbita moschata (Rifu)	cmacmoB351
CmaCh17G011010	Cucurbita moschata (Rifu)	cmacmoB374
CmaCh17G011010	Wild cucumber (PI 183967)	cmacpiB369
CmaCh17G011010	Cucumber (Chinese Long) v2	cmacuB365
CmaCh17G011010	Melon (DHL92) v3.5.1	cmameB347
CmaCh17G011010	Watermelon (Charleston Gray)	cmawcgB314
CmaCh17G011010	Watermelon (97103) v1	cmawmB345
CmaCh17G011010	Watermelon (97103) v1	cmawmB336
CmaCh17G011010	Cucurbita pepo (Zucchini)	cmacpeB376
CmaCh17G011010	Bottle gourd (USVL1VR-Ls)	cmalsiB351
CmaCh17G011010	Melon (DHL92) v3.6.1	cmamedB401