MELO3C016017.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C016017.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	translocator protein homolog
Location	chr01 : 32510659 .. 32511626 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATTTCTCCATCTCTTTAAATCCCCTCTCCCCTACAAATCTCCACCCAAAATATGGCTTCCACCGATCTTAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCACCGCCGACGTCAACGACGGTACCAAAAAAGCAAGGAACAAAGTCATAGCCAAACGAGGCCTAAGATCTCTAGCTCTTGCTATCTCCATCCCTGTTTCCCTCACTCTCCTTTTCATCTTCCTATTCTCCAACTCCAAAAACTACTACCCGGCCTCCGCCGGGAGACCCTTCTGGGTTCCGTCGACAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCGGCGTGGCTGGTCTGGGCCGAGGGCGGATTCCACTCCAGGCCCAACGCCCTATACCTTTATGGTTTGTATTTAGTGTTGTGTCTGGCGTGGTATGCCCTCGTGTTTGGTGCTGGAGCGCGACGGCTTAGTTCTTTGGCATGTTTGGGAAAGACAGCAGCGTTGGTCGGGTGCGACAGGTTGTTTCGAGGAGTGAACCCGATTGCGGCGGATTTGGTTAAACCTTGTTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTATGGCTTCTCTTTGAGGTTTAAAAATAATATAACATGGTCATGTTGTCTCTTCGTGTAGCTTTGTTTGAAACTTTTGTTGGCCTTTTTTTCTTCTTCTTTACGATTCACTTGTGAATTAGATTATGTGGGCTTAGACTCTAACTCTATTAGAATGTGCTGCTTAGCGATAAATGTTATGTTTAAAGATTGGATTGTGTTGTGTTAATTAGTTTAAATTAGTTCAGAAGTTTGGATCACTAAATTAAACTTCCAGTTTGAGTTTTCAACTTTGGAAGTTTAGAAGTGTGAAAAAAATCTGAAAAATAAGAAAGATTTTCTACTTTTTACTAAAACTTCAATAAAATGGAATATGT

mRNA sequence

CCATTTCTCCATCTCTTTAAATCCCCTCTCCCCTACAAATCTCCACCCAAAATATGGCTTCCACCGATCTTAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCACCGCCGACGTCAACGACGGTACCAAAAAAGCAAGGAACAAAGTCATAGCCAAACGAGGCCTAAGATCTCTAGCTCTTGCTATCTCCATCCCTGTTTCCCTCACTCTCCTTTTCATCTTCCTATTCTCCAACTCCAAAAACTACTACCCGGCCTCCGCCGGGAGACCCTTCTGGGTTCCGTCGACAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCGGCGTGGCTGGTCTGGGCCGAGGGCGGATTCCACTCCAGGCCCAACGCCCTATACCTTTATGGTTTGTATTTAGTGTTGTGTCTGGCGTGGTATGCCCTCGTGTTTGGTGCTGGAGCGCGACGGCTTAGTTCTTTGGCATGTTTGGGAAAGACAGCAGCGTTGGTCGGGTGCGACAGGTTGTTTCGAGGAGTGAACCCGATTGCGGCGGATTTGGTTAAACCTTGTTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTATGGCTTCTCTTTGAGGTTTAAAAATAATATAACATGGTCATGTTGTCTCTTCGTGTAGCTTTGTTTGAAACTTTTGTTGGCCTTTTTTTCTTCTTCTTTACGATTCACTTGTGAATTAGATTATGTGGGCTTAGACTCTAACTCTATTAGAATGTGCTGCTTAGCGATAAATGTTATGTTTAAAGATTGGATTGTGTTGTGTTAATTAGTTTAAATTAGTTCAGAAGTTTGGATCACTAAATTAAACTTCCAGTTTGAGTTTTCAACTTTGGAAGTTTAGAAGTGTGAAAAAAATCTGAAAAATAAGAAAGATTTTCTACTTTTTACTAAAACTTCAATAAAATGGAATATGT

Coding sequence (CDS)

ATGGCTTCCACCGATCTTAAACACCGAAAAACCGATGACTCCACCCCCACTTCCACCGTCACCGCCGACGTCAACGACGGTACCAAAAAAGCAAGGAACAAAGTCATAGCCAAACGAGGCCTAAGATCTCTAGCTCTTGCTATCTCCATCCCTGTTTCCCTCACTCTCCTTTTCATCTTCCTATTCTCCAACTCCAAAAACTACTACCCGGCCTCCGCCGGGAGACCCTTCTGGGTTCCGTCGACAAAGGTCGTAAACTGGGGGTCTTTGACTTCTAGCTTGTTAATGGGCGTCGCGGCGTGGCTGGTCTGGGCCGAGGGCGGATTCCACTCCAGGCCCAACGCCCTATACCTTTATGGTTTGTATTTAGTGTTGTGTCTGGCGTGGTATGCCCTCGTGTTTGGTGCTGGAGCGCGACGGCTTAGTTCTTTGGCATGTTTGGGAAAGACAGCAGCGTTGGTCGGGTGCGACAGGTTGTTTCGAGGAGTGAACCCGATTGCGGCGGATTTGGTTAAACCTTGTTTGGTTTGGTCTGTTTTGCTTACGGTTGTGAATCTCACTATGGCTTCTCTTTGA

Protein sequence

MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLALAISIPVSLTLLFIFLFSNSKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYGLYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVLLTVVNLTMASL

Homology

[Close]

BLAST of MELO3C016017.2 vs. NCBI nr
Match: XP_004136174.1 (PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetical protein Csa_7G396370 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 1.7e-79
Identity = 155/191 (81.15%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MASTDLKHRKTDDSTPTSTV+AD NDGTKK++NKVIAKRGLRSL                
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                KNYYPASA +PFWVPS KVVNWGSLTSSLLMGVAAWLVWAEGGFH+RPNALYLYG
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
           LY VLCL WYAL+FGAGARRLS+LACLGKTAALVGCDRLFRGVNP+AADLVKPCLVWSVL
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTVVNLTMASL 192
           LTVVNLT+ SL
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of MELO3C016017.2 vs. NCBI nr
Match: XP_022992488.1 (translocator protein homolog [Cucurbita maxima])

HSP 1 Score: 234.6 bits (597), Expect = 2.8e-58
Identity = 122/191 (63.87%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MAST+LKHR T DS        +V+  TK+A+NK IAKRGL+SL                
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVS--TKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                KNYYP SA +PFWVPS +VVNWGSL SSLLMG+++WL WAEGGF ++PNALYLY 
Sbjct: 61  LLSKPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNALYLYT 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
           LYLVLC+AWY LV GAG+R L S+ACLGKTA LVGCDRLFRGVN IAADLV+PCLVWSV 
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTMASL 192
           LT+V+LTM S+
Sbjct: 181 LTIVSLTMVSV 188

[Close]

BLAST of MELO3C016017.2 vs. NCBI nr
Match: XP_022953735.1 (translocator protein homolog [Cucurbita moschata])

HSP 1 Score: 230.3 bits (586), Expect = 5.4e-57
Identity = 120/191 (62.83%), Postives = 140/191 (73.30%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MAST+LKHR T DS        +V+   K+ +NK IAKRGL+SL                
Sbjct: 1   MASTELKHRTTGDSPAVPAAADEVS--AKREKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                KNYYP SA +PFWVPS +VVNWGSL SSLLMG+++WL WAEGGF +RPNALYLY 
Sbjct: 61  LLARPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQARPNALYLYT 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
           LYLVLC+AW+ LV GAG+R L S+ACLGKTA LVGCDRLFRGVN IAADLV+PCLVWSV 
Sbjct: 121 LYLVLCMAWHGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNAIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTMASL 192
           LT+V+LTM S+
Sbjct: 181 LTIVSLTMVSV 188

[Close]

BLAST of MELO3C016017.2 vs. NCBI nr
Match: XP_023548365.1 (translocator protein homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 9.2e-57
Identity = 120/191 (62.83%), Postives = 142/191 (74.35%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MAST+LKHR T DS P +    + +   K+A+NK IAKRGL+SL                
Sbjct: 1   MASTELKHRTTGDS-PAAPAADEAS--AKRAKNKAIAKRGLKSLAVAVSIPIAVTLLSIL 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                KNYYP SA +PFWVPS +VVNWGSL SSLLMG+++WL WAEGGF ++PNA+YLY 
Sbjct: 61  LLSRPKNYYP-SATKPFWVPSARVVNWGSLASSLLMGISSWLFWAEGGFQAKPNAVYLYT 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
           LYLVLC+AWY LV GAG+R L S+ACLGKTA LVGCDRLFRGVN IAADLV+PCLVWSV 
Sbjct: 121 LYLVLCMAWYGLVLGAGSRWLGSVACLGKTATLVGCDRLFRGVNGIAADLVRPCLVWSVF 180

Query: 181 LTVVNLTMASL 192
           LT+V+LTM S+
Sbjct: 181 LTIVSLTMVSV 187

[Close]

BLAST of MELO3C016017.2 vs. NCBI nr
Match: XP_022151009.1 (translocator protein homolog [Momordica charantia])

HSP 1 Score: 184.9 bits (468), Expect = 2.6e-43
Identity = 113/190 (59.47%), Postives = 128/190 (67.37%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MAS DLKHRK  +S  ++T                    GL+S XXXXXXXXXXX     
Sbjct: 1   MASPDLKHRKPTESDDSATA------XXXXXXXXXXXXXGLKSXXXXXXXXXXXXLLAVY 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                   +P S+ +PFW PS   VN GS  SSLLMG A WLVWA+GGFHS PNALYLY 
Sbjct: 61  LLSDPTK-FPPSSPKPFWFPSAAAVNLGSFASSLLMGAAVWLVWADGGFHSTPNALYLYT 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
           LY++LC  WY L+ GAGA RL+++ACL KTAALVGCDRLFR VNPIAADLVKPCL WSV 
Sbjct: 121 LYVLLCFTWYGLLLGAGAPRLAAVACLAKTAALVGCDRLFRRVNPIAADLVKPCLAWSVF 180

Query: 181 LTVVNLTMAS 191
           LTVVNLTM +
Sbjct: 181 LTVVNLTMVA 183

[Close]

BLAST of MELO3C016017.2 vs. TAIR10
Match: AT2G47770.1 (TSPO(outer membrane tryptophan-rich sensory protein)-related)

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-27
Identity = 72/196 (36.73%), Postives = 104/196 (53.06%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTV-------TADVNDGTKKARNKVIAKRGLRSLXXXXXXXXX 60
           M S D+++R  DD    +T        +AD N G K+ + + +AKRGL+SL         
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKG-KRDQKRAMAKRGLKSL-TVAVAAPV 60

Query: 61  XXXXXXXXXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRP 120
                        + Y   A    W+P   +++   L SS LMG+AAWLVW +GGFH +P
Sbjct: 61  LVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKP 120

Query: 121 NALYLYGLYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKP 180
           NALYLY    +LCL W  + F  G+        LG++AAL GC + F  ++P+A +LVKP
Sbjct: 121 NALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKP 180

Query: 181 CLVWSVLLTVVNLTMA 190
           CL W+  +  VN+ +A
Sbjct: 181 CLAWAAFVAAVNVKLA 194

[Close]

BLAST of MELO3C016017.2 vs. Swiss-Prot
Match: sp|O82245|TSPO_ARATH (Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.7e-26
Identity = 72/196 (36.73%), Postives = 104/196 (53.06%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTV-------TADVNDGTKKARNKVIAKRGLRSLXXXXXXXXX 60
           M S D+++R  DD    +T        +AD N G K+ + + +AKRGL+SL         
Sbjct: 1   MDSQDIRYRGGDDRDAATTAMAETERKSADDNKG-KRDQKRAMAKRGLKSL-TVAVAAPV 60

Query: 61  XXXXXXXXXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRP 120
                        + Y   A    W+P   +++   L SS LMG+AAWLVW +GGFH +P
Sbjct: 61  LVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKP 120

Query: 121 NALYLYGLYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKP 180
           NALYLY    +LCL W  + F  G+        LG++AAL GC + F  ++P+A +LVKP
Sbjct: 121 NALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKP 180

Query: 181 CLVWSVLLTVVNLTMA 190
           CL W+  +  VN+ +A
Sbjct: 181 CLAWAAFVAAVNVKLA 194

[Close]

BLAST of MELO3C016017.2 vs. TrEMBL
Match: tr|A0A0A0KAU9|A0A0A0KAU9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.1e-79
Identity = 155/191 (81.15%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MASTDLKHRKTDDSTPTSTV+AD NDGTKK++NKVIAKRGLRSL                
Sbjct: 1   MASTDLKHRKTDDSTPTSTVSADDNDGTKKSKNKVIAKRGLRSLALAISIPVSLTLFFIL 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                KNYYPASA +PFWVPS KVVNWGSLTSSLLMGVAAWLVWAEGGFH+RPNALYLYG
Sbjct: 61  LFSNSKNYYPASAPKPFWVPSAKVVNWGSLTSSLLMGVAAWLVWAEGGFHARPNALYLYG 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
           LY VLCL WYAL+FGAGARRLS+LACLGKTAALVGCDRLFRGVNP+AADLVKPCLVWSVL
Sbjct: 121 LYSVLCLTWYALMFGAGARRLSALACLGKTAALVGCDRLFRGVNPLAADLVKPCLVWSVL 180

Query: 181 LTVVNLTMASL 192
           LTVVNLT+ SL
Sbjct: 181 LTVVNLTVVSL 191

[Close]

BLAST of MELO3C016017.2 vs. TrEMBL
Match: tr|A0A2I4E738|A0A2I4E738_9ROSI (translocator protein homolog OS=Juglans regia OX=51240 GN=LOC108986877 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.4e-31
Identity = 83/191 (43.46%), Postives = 103/191 (53.93%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MAS DLKHR  +D   T+    D  +  K  RN  IAKRGLRSL                
Sbjct: 1   MASHDLKHRTREDPDITTRTYNDRENKAKPLRNAAIAKRGLRSLAIGISGPLSLTLLSLH 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                  Y   +  + FW+P    ++   L SS LM ++AWLVWA GGFH +P ALYLY 
Sbjct: 61  LGADRSCY--GTLSKRFWLPPPWALHMTCLASSFLMNLSAWLVWAVGGFHRKPTALYLYL 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
             L L LAW  +V G GA R+  L CL    A+VGC R+F+ VNPI+ DL KPCL W+  
Sbjct: 121 AQLGLSLAWNQIVLGTGANRVGLLVCLAMFGAVVGCYRMFKEVNPISGDLAKPCLAWTAF 180

Query: 181 LTVVNLTMASL 192
           L +VNL +  L
Sbjct: 181 LAIVNLKLLFL 189

[Close]

BLAST of MELO3C016017.2 vs. TrEMBL
Match: tr|A0A1S3TPG8|A0A1S3TPG8_VIGRR (translocator protein homolog OS=Vigna radiata var. radiata OX=3916 GN=LOC106757493 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.8e-29
Identity = 80/188 (42.55%), Postives = 103/188 (54.79%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           MAS +LKHR T    P +        G K+ + KV+AKRGL+SL                
Sbjct: 1   MASNNLKHRLTPH--PDTAANDKGMIGDKRQKRKVMAKRGLKSLAIAVTLPFSLTVLSAC 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                   +  S  RPFW P +  +++   + S LMG+AAW+VWAEGGFH  P AL  Y 
Sbjct: 61  IGSSIAGDHSLSTRRPFWFPPSWALHFTCPSISFLMGLAAWMVWAEGGFHRNPMALLFYF 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
             L+  + W  LVF AGA RLS + CL    +  GC R+FR VNPIAADL+KPCL W   
Sbjct: 121 TQLLFAVLWDPLVFAAGATRLSLMLCLVLFVSQYGCMRVFRSVNPIAADLIKPCLAWVAF 180

Query: 181 LTVVNLTM 189
           L++VNL +
Sbjct: 181 LSIVNLKL 186

[Close]

BLAST of MELO3C016017.2 vs. TrEMBL
Match: tr|I0B680|I0B680_GOSHI (Putative peripheral-type benzodiazepine receptor OS=Gossypium hirsutum OX=3635 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.4e-29
Identity = 80/191 (41.88%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           M S +LKHR  DD   T+T + + N   ++ +   +AKRGLRSL                
Sbjct: 1   MESQNLKHRSRDDPRFTTTTSNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSLTLLNIY 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                + Y  AS  +PFW P   +++ G L SS LMG++AW VW EGGFH +P AL LY 
Sbjct: 61  LFGSGRGY--ASLAKPFWFPPLWLLHTGCLASSFLMGLSAWFVWVEGGFHVKPTALSLYL 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
            YL L +AW+  V   GA R   L  L     LVGC R FR VNPIA + V PCL W+  
Sbjct: 121 GYLGLSMAWHPTVLWMGASRAGLLVNLAMVGTLVGCSRDFRKVNPIAGNSVMPCLAWAAF 180

Query: 181 LTVVNLTMASL 192
           L  VNL +  L
Sbjct: 181 LATVNLKLVFL 189

[Close]

BLAST of MELO3C016017.2 vs. TrEMBL
Match: tr|A0A1U8LTZ3|A0A1U8LTZ3_GOSHI (translocator protein homolog OS=Gossypium hirsutum OX=3635 GN=LOC107929867 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.4e-29
Identity = 80/191 (41.88%), Postives = 101/191 (52.88%), Query Frame = 0


Query: 1   MASTDLKHRKTDDSTPTSTVTADVNDGTKKARNKVIAKRGLRSLXXXXXXXXXXXXXXXX 60
           M S +LKHR  DD   T+T + + N   ++ +   +AKRGLRSL                
Sbjct: 1   MESQNLKHRSRDDPRFTTTTSNEKNRANRREKRMAMAKRGLRSLVIAVSFPLSPTLSNIY 60

Query: 61  XXXXXKNYYPASAGRPFWVPSTKVVNWGSLTSSLLMGVAAWLVWAEGGFHSRPNALYLYG 120
                + Y  AS  +PFW P   +++ G L SS LMG++AW VW EGGFH +P AL LY 
Sbjct: 61  LFGSGRGY--ASLAKPFWFPPLWLLHTGCLASSFLMGLSAWFVWVEGGFHVKPTALSLYL 120

Query: 121 LYLVLCLAWYALVFGAGARRLSSLACLGKTAALVGCDRLFRGVNPIAADLVKPCLVWSVL 180
            YL L +AW+  V   GA R   L  L     LVGC R FR VNPIA + V PCL W+  
Sbjct: 121 GYLGLSMAWHPTVLWMGASRAGLLVNLAMVGTLVGCSRDFRKVNPIAGNSVMPCLAWAAF 180

Query: 181 LTVVNLTMASL 192
           L  VNL +  L
Sbjct: 181 LATVNLKLVFL 189

The following BLAST results are available for this feature:

BLAST of MELO3C016017.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136174.1	1.7e-79	81.15	PREDICTED: translocator protein homolog [Cucumis sativus] >KGN44921.1 hypothetic...	[more]
XP_022992488.1	2.8e-58	63.87	translocator protein homolog [Cucurbita maxima]	[more]
XP_022953735.1	5.4e-57	62.83	translocator protein homolog [Cucurbita moschata]	[more]
XP_023548365.1	9.2e-57	62.83	translocator protein homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022151009.1	2.6e-43	59.47	translocator protein homolog [Momordica charantia]	[more]

BLAST of MELO3C016017.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47770.1	5.4e-27	36.73	TSPO(outer membrane tryptophan-rich sensory protein)-related	[more]

BLAST of MELO3C016017.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O82245\|TSPO_ARATH	9.7e-26	36.73	Translocator protein homolog OS=Arabidopsis thaliana OX=3702 GN=TSPO PE=1 SV=1	[more]

BLAST of MELO3C016017.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KAU9\|A0A0A0KAU9_CUCSA	1.1e-79	81.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396370 PE=4 SV=1	[more]
tr\|A0A2I4E738\|A0A2I4E738_9ROSI	4.4e-31	43.46	translocator protein homolog OS=Juglans regia OX=51240 GN=LOC108986877 PE=4 SV=1	[more]
tr\|A0A1S3TPG8\|A0A1S3TPG8_VIGRR	1.8e-29	42.55	translocator protein homolog OS=Vigna radiata var. radiata OX=3916 GN=LOC1067574...	[more]
tr\|I0B680\|I0B680_GOSHI	2.4e-29	41.88	Putative peripheral-type benzodiazepine receptor OS=Gossypium hirsutum OX=3635 P...	[more]
tr\|A0A1U8LTZ3\|A0A1U8LTZ3_GOSHI	2.4e-29	41.88	translocator protein homolog OS=Gossypium hirsutum OX=3635 GN=LOC107929867 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR004307	TspO_MBR
IPR038330	TspO/MBR-related_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C016017.2.1	MELO3C016017.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038330	TspO/MBR-related superfamily	GENE3D	G3DSA:1.20.1260.100		coord: 40..191 e-value: 2.0E-18 score: 68.4
IPR004307	TspO/MBR-related protein	PFAM	PF03073	TspO_MBR	coord: 47..189 e-value: 4.8E-17 score: 62.2
IPR004307	TspO/MBR-related protein	PIRSF	PIRSF005859	PBR	coord: 33..191 e-value: 1.8E-28 score: 95.9
IPR004307	TspO/MBR-related protein	PANTHER	PTHR10057	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR	coord: 28..187
IPR004307	TspO/MBR-related protein	CDD	cd15904	TSPO_MBR	coord: 44..189 e-value: 3.57297E-16 score: 70.6036
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR10057:SF6	SUBFAMILY NOT NAMED	coord: 28..187

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C016017.2	Csa7G396370	Cucumber (Chinese Long) v2	cumedB511
MELO3C016017.2	CSPI07G17310	Wild cucumber (PI 183967)	cpimedB525
MELO3C016017.2	Cucsa.205710	Cucumber (Gy14) v1	cgymedB368
MELO3C016017.2	CmaCh17G011010	Cucurbita maxima (Rimu)	cmamedB373
MELO3C016017.2	CmoCh17G010760	Cucurbita moschata (Rifu)	cmomedB359
MELO3C016017.2	Lsi02G023870	Bottle gourd (USVL1VR-Ls)	lsimedB201
MELO3C016017.2	Cp4.1LG12g05440	Cucurbita pepo (Zucchini)	cpemedB145
MELO3C016017.2	CsGy7G015750	Cucumber (Gy14) v2	cgybmedB467
MELO3C016017.2	Cla015051	Watermelon (97103) v1	medwmB181
MELO3C016017.2	ClCG09G006030	Watermelon (Charleston Gray)	medwcgB155
MELO3C016017.2	Cla97C09G168590	Watermelon (97103) v2	medwmbB194
MELO3C016017.2	Bhi09G000700	Wax gourd	medwgoB255
MELO3C016017.2	Carg07183	Silver-seed gourd	carmedB0112
MELO3C016017.2	CsaV3_7G029110	Cucumber (Chinese Long) v3	cucmedB538

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C016017.2	Cucurbita maxima (Rimu)	cmamedB930
MELO3C016017.2	Cucurbita moschata (Rifu)	cmomedB920
MELO3C016017.2	Cucurbita pepo (Zucchini)	cpemedB341